EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXCOG00000016040 (Gene tree)
Gene ID: -
Gene Symbol: cpsf4
Alias: nar|no arches
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Minus strand
Length: 3033 bases
Position: chrKQ557208.1:6405264-6408296
Accession: ZDB-GENE-990415-180
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000021434	zf-CCCH	PF00642.24	3.2e-22	1	2
ENSXCOP00000021434	zf-CCCH	PF00642.24	3.2e-22	2	2
ENSXCOP00000021435	zf-CCCH	PF00642.24	2.4e-17	1	2
ENSXCOP00000021435	zf-CCCH	PF00642.24	2.4e-17	2	2
ENSXCOP00000021435	zf-CCHC	PF00098.23	9.1e-05	1	1
ENSXCOP00000021434	zf-CCHC	PF00098.23	0.00011	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000021696	-	795	-	ENSXCOP00000021434	264 (aa)	-	-
ENSXCOT00000021697	-	636	-	ENSXCOP00000021435	211 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000016040's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000016040's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000016040	cpsf4	100	83.886	ENSG00000160917	CPSF4	100	97.321	Homo_sapiens
ENSXCOG00000016040	cpsf4	67	81.356	ENSAPOG00000004921	cpsf4	100	81.356	Acanthochromis_polyacanthus
ENSXCOG00000016040	cpsf4	100	82.593	ENSAMEG00000006252	CPSF4	100	82.593	Ailuropoda_melanoleuca
ENSXCOG00000016040	cpsf4	100	82.576	ENSACIG00000009248	cpsf4	100	83.712	Amphilophus_citrinellus
ENSXCOG00000016040	cpsf4	100	90.189	ENSAOCG00000019616	cpsf4	100	90.189	Amphiprion_ocellaris
ENSXCOG00000016040	cpsf4	100	90.189	ENSAPEG00000011679	cpsf4	100	90.189	Amphiprion_percula
ENSXCOG00000016040	cpsf4	100	89.888	ENSATEG00000007010	cpsf4	100	89.888	Anabas_testudineus
ENSXCOG00000016040	cpsf4	100	80.741	ENSACAG00000012941	CPSF4	89	80.741	Anolis_carolinensis
ENSXCOG00000016040	cpsf4	100	83.886	ENSANAG00000021360	CPSF4	100	83.886	Aotus_nancymaae
ENSXCOG00000016040	cpsf4	100	88.679	ENSACLG00000010374	cpsf4	100	88.679	Astatotilapia_calliptera
ENSXCOG00000016040	cpsf4	100	86.730	ENSAMXG00000031647	cpsf4	100	86.730	Astyanax_mexicanus
ENSXCOG00000016040	cpsf4	100	79.167	ENSBTAG00000002090	CPSF4	100	78.788	Bos_taurus
ENSXCOG00000016040	cpsf4	100	83.886	ENSCJAG00000015826	CPSF4	100	83.886	Callithrix_jacchus
ENSXCOG00000016040	cpsf4	100	83.962	ENSCAFG00000015036	CPSF4	99	86.667	Canis_familiaris
ENSXCOG00000016040	cpsf4	100	79.147	ENSCAFG00020014462	CPSF4	100	79.147	Canis_lupus_dingo
ENSXCOG00000016040	cpsf4	100	83.886	ENSCHIG00000014313	CPSF4	100	83.886	Capra_hircus
ENSXCOG00000016040	cpsf4	89	74.153	ENSTSYG00000008195	-	100	76.796	Carlito_syrichta
ENSXCOG00000016040	cpsf4	100	75.587	ENSTSYG00000014604	-	100	75.587	Carlito_syrichta
ENSXCOG00000016040	cpsf4	100	84.834	ENSTSYG00000005712	-	100	84.834	Carlito_syrichta
ENSXCOG00000016040	cpsf4	82	81.614	ENSCAPG00000013881	CPSF4	88	81.614	Cavia_aperea
ENSXCOG00000016040	cpsf4	100	84.360	ENSCPOG00000001783	CPSF4	100	84.360	Cavia_porcellus
ENSXCOG00000016040	cpsf4	100	83.886	ENSCCAG00000028291	CPSF4	100	83.886	Cebus_capucinus
ENSXCOG00000016040	cpsf4	100	83.886	ENSCATG00000038440	CPSF4	100	83.886	Cercocebus_atys
ENSXCOG00000016040	cpsf4	100	83.886	ENSCLAG00000007050	CPSF4	100	83.886	Chinchilla_lanigera
ENSXCOG00000016040	cpsf4	100	81.852	ENSCSAG00000017795	CPSF4	100	81.852	Chlorocebus_sabaeus
ENSXCOG00000016040	cpsf4	80	82.028	ENSCPBG00000020869	CPSF4	100	82.028	Chrysemys_picta_bellii
ENSXCOG00000016040	cpsf4	63	79.518	ENSCPBG00000010269	-	100	79.518	Chrysemys_picta_bellii
ENSXCOG00000016040	cpsf4	96	57.087	ENSCING00000021080	-	96	56.917	Ciona_intestinalis
ENSXCOG00000016040	cpsf4	96	54.255	ENSCSAVG00000011469	-	97	54.255	Ciona_savignyi
ENSXCOG00000016040	cpsf4	100	83.886	ENSCANG00000019384	CPSF4	100	83.886	Colobus_angolensis_palliatus
ENSXCOG00000016040	cpsf4	100	84.360	ENSCGRG00001024184	Cpsf4	100	84.360	Cricetulus_griseus_chok1gshd
ENSXCOG00000016040	cpsf4	100	84.360	ENSCGRG00000013892	Cpsf4	100	84.360	Cricetulus_griseus_crigri
ENSXCOG00000016040	cpsf4	100	88.626	ENSCSEG00000019055	cpsf4	100	88.626	Cynoglossus_semilaevis
ENSXCOG00000016040	cpsf4	100	95.094	ENSCVAG00000016528	cpsf4	100	95.094	Cyprinodon_variegatus
ENSXCOG00000016040	cpsf4	100	83.764	ENSDARG00000020217	cpsf4	100	83.764	Danio_rerio
ENSXCOG00000016040	cpsf4	100	82.222	ENSDNOG00000006344	CPSF4	100	82.222	Dasypus_novemcinctus
ENSXCOG00000016040	cpsf4	80	83.028	ENSDORG00000000742	Cpsf4	100	83.028	Dipodomys_ordii
ENSXCOG00000016040	cpsf4	100	55.479	FBgn0015621	Clp	99	56.164	Drosophila_melanogaster
ENSXCOG00000016040	cpsf4	73	90.909	ENSETEG00000002608	CPSF4	70	91.515	Echinops_telfairi
ENSXCOG00000016040	cpsf4	99	66.794	ENSEBUG00000012552	cpsf4	98	66.794	Eptatretus_burgeri
ENSXCOG00000016040	cpsf4	100	79.924	ENSEASG00005002487	CPSF4	100	79.924	Equus_asinus_asinus
ENSXCOG00000016040	cpsf4	100	84.360	ENSECAG00000007525	CPSF4	100	84.360	Equus_caballus
ENSXCOG00000016040	cpsf4	68	91.045	ENSEEUG00000002158	CPSF4	73	91.045	Erinaceus_europaeus
ENSXCOG00000016040	cpsf4	100	82.353	ENSELUG00000011481	cpsf4	100	82.353	Esox_lucius
ENSXCOG00000016040	cpsf4	100	84.360	ENSFCAG00000015070	CPSF4	100	84.360	Felis_catus
ENSXCOG00000016040	cpsf4	63	56.977	ENSFALG00000012906	-	100	56.977	Ficedula_albicollis
ENSXCOG00000016040	cpsf4	100	79.924	ENSFALG00000013799	CPSF4	100	79.924	Ficedula_albicollis
ENSXCOG00000016040	cpsf4	90	81.557	ENSFDAG00000014092	CPSF4	100	83.243	Fukomys_damarensis
ENSXCOG00000016040	cpsf4	100	95.849	ENSFHEG00000010880	cpsf4	100	95.849	Fundulus_heteroclitus
ENSXCOG00000016040	cpsf4	100	82.331	ENSGMOG00000002330	cpsf4	100	82.331	Gadus_morhua
ENSXCOG00000016040	cpsf4	99	35.912	ENSGALG00000004441	-	98	35.912	Gallus_gallus
ENSXCOG00000016040	cpsf4	100	79.924	ENSGALG00000004714	CPSF4	100	79.924	Gallus_gallus
ENSXCOG00000016040	cpsf4	100	99.621	ENSGAFG00000010580	cpsf4	100	99.621	Gambusia_affinis
ENSXCOG00000016040	cpsf4	100	83.146	ENSGACG00000007792	cpsf4	100	83.146	Gasterosteus_aculeatus
ENSXCOG00000016040	cpsf4	100	82.593	ENSGAGG00000021835	CPSF4	100	82.593	Gopherus_agassizii
ENSXCOG00000016040	cpsf4	69	76.374	ENSGAGG00000020579	-	100	76.374	Gopherus_agassizii
ENSXCOG00000016040	cpsf4	100	83.886	ENSGGOG00000015131	CPSF4	100	83.886	Gorilla_gorilla
ENSXCOG00000016040	cpsf4	100	88.679	ENSHBUG00000013699	cpsf4	100	88.679	Haplochromis_burtoni
ENSXCOG00000016040	cpsf4	100	83.886	ENSHGLG00000017150	CPSF4	100	83.886	Heterocephalus_glaber_female
ENSXCOG00000016040	cpsf4	100	63.507	ENSHGLG00100017302	-	100	63.507	Heterocephalus_glaber_male
ENSXCOG00000016040	cpsf4	87	79.661	ENSHGLG00100009215	-	100	80.682	Heterocephalus_glaber_male
ENSXCOG00000016040	cpsf4	100	87.925	ENSHCOG00000004397	cpsf4	100	87.925	Hippocampus_comes
ENSXCOG00000016040	cpsf4	100	82.657	ENSIPUG00000017147	cpsf4	100	84.133	Ictalurus_punctatus
ENSXCOG00000016040	cpsf4	100	84.360	ENSSTOG00000001688	CPSF4	100	84.360	Ictidomys_tridecemlineatus
ENSXCOG00000016040	cpsf4	100	83.886	ENSJJAG00000019426	Cpsf4	100	83.886	Jaculus_jaculus
ENSXCOG00000016040	cpsf4	100	90.943	ENSKMAG00000015642	cpsf4	100	90.943	Kryptolebias_marmoratus
ENSXCOG00000016040	cpsf4	100	59.623	ENSLACG00000018470	-	100	59.623	Latimeria_chalumnae
ENSXCOG00000016040	cpsf4	100	83.026	ENSLACG00000010938	CPSF4	100	83.026	Latimeria_chalumnae
ENSXCOG00000016040	cpsf4	100	82.528	ENSLOCG00000004814	cpsf4	100	82.528	Lepisosteus_oculatus
ENSXCOG00000016040	cpsf4	100	82.222	ENSLAFG00000000159	CPSF4	100	84.472	Loxodonta_africana
ENSXCOG00000016040	cpsf4	100	83.886	ENSMFAG00000001462	CPSF4	100	83.886	Macaca_fascicularis
ENSXCOG00000016040	cpsf4	100	83.886	ENSMMUG00000019191	CPSF4	100	83.886	Macaca_mulatta
ENSXCOG00000016040	cpsf4	100	83.886	ENSMNEG00000032306	CPSF4	100	83.886	Macaca_nemestrina
ENSXCOG00000016040	cpsf4	100	83.886	ENSMLEG00000034721	CPSF4	100	83.886	Mandrillus_leucophaeus
ENSXCOG00000016040	cpsf4	100	88.722	ENSMAMG00000006244	cpsf4	100	88.722	Mastacembelus_armatus
ENSXCOG00000016040	cpsf4	100	88.679	ENSMZEG00005007515	cpsf4	100	88.679	Maylandia_zebra
ENSXCOG00000016040	cpsf4	87	77.826	ENSMGAG00000004235	CPSF4	100	77.826	Meleagris_gallopavo
ENSXCOG00000016040	cpsf4	100	84.360	ENSMAUG00000021253	Cpsf4	100	84.360	Mesocricetus_auratus
ENSXCOG00000016040	cpsf4	100	83.886	ENSMICG00000017429	CPSF4	100	83.886	Microcebus_murinus
ENSXCOG00000016040	cpsf4	100	84.360	ENSMOCG00000014901	Cpsf4	100	84.360	Microtus_ochrogaster
ENSXCOG00000016040	cpsf4	100	89.474	ENSMMOG00000001813	cpsf4	100	89.474	Mola_mola
ENSXCOG00000016040	cpsf4	100	82.593	ENSMODG00000001367	CPSF4	100	82.593	Monodelphis_domestica
ENSXCOG00000016040	cpsf4	100	88.722	ENSMALG00000012611	cpsf4	100	88.722	Monopterus_albus
ENSXCOG00000016040	cpsf4	100	84.360	MGP_CAROLIEiJ_G0028012	Cpsf4	100	84.360	Mus_caroli
ENSXCOG00000016040	cpsf4	100	84.360	ENSMUSG00000029625	Cpsf4	100	84.360	Mus_musculus
ENSXCOG00000016040	cpsf4	100	84.360	MGP_PahariEiJ_G0024581	Cpsf4	100	84.360	Mus_pahari
ENSXCOG00000016040	cpsf4	100	83.886	MGP_SPRETEiJ_G0029013	Cpsf4	100	83.886	Mus_spretus
ENSXCOG00000016040	cpsf4	100	82.593	ENSMPUG00000016508	CPSF4	100	82.593	Mustela_putorius_furo
ENSXCOG00000016040	cpsf4	87	78.261	ENSMLUG00000010980	CPSF4	100	77.391	Myotis_lucifugus
ENSXCOG00000016040	cpsf4	100	84.360	ENSNGAG00000001567	Cpsf4	100	84.360	Nannospalax_galili
ENSXCOG00000016040	cpsf4	91	87.967	ENSNBRG00000003943	cpsf4	98	87.967	Neolamprologus_brichardi
ENSXCOG00000016040	cpsf4	100	83.886	ENSNLEG00000011074	CPSF4	100	83.886	Nomascus_leucogenys
ENSXCOG00000016040	cpsf4	100	82.593	ENSMEUG00000006955	CPSF4	100	82.593	Notamacropus_eugenii
ENSXCOG00000016040	cpsf4	100	81.852	ENSOPRG00000013663	CPSF4	100	81.852	Ochotona_princeps
ENSXCOG00000016040	cpsf4	100	63.235	ENSODEG00000009779	-	100	63.235	Octodon_degus
ENSXCOG00000016040	cpsf4	100	84.360	ENSODEG00000011181	-	100	84.360	Octodon_degus
ENSXCOG00000016040	cpsf4	98	68.462	ENSODEG00000018283	-	91	68.462	Octodon_degus
ENSXCOG00000016040	cpsf4	100	88.679	ENSONIG00000008495	cpsf4	100	88.679	Oreochromis_niloticus
ENSXCOG00000016040	cpsf4	100	53.047	ENSOANG00000009568	-	100	53.047	Ornithorhynchus_anatinus
ENSXCOG00000016040	cpsf4	87	80.851	ENSOANG00000007729	CPSF4	100	80.851	Ornithorhynchus_anatinus
ENSXCOG00000016040	cpsf4	100	81.852	ENSOCUG00000002437	CPSF4	70	81.852	Oryctolagus_cuniculus
ENSXCOG00000016040	cpsf4	100	92.075	ENSORLG00000022798	cpsf4	100	92.075	Oryzias_latipes
ENSXCOG00000016040	cpsf4	100	92.075	ENSORLG00020008548	cpsf4	100	92.075	Oryzias_latipes_hni
ENSXCOG00000016040	cpsf4	100	91.698	ENSORLG00015019575	cpsf4	100	91.698	Oryzias_latipes_hsok
ENSXCOG00000016040	cpsf4	100	90.189	ENSOMEG00000005176	cpsf4	100	90.189	Oryzias_melastigma
ENSXCOG00000016040	cpsf4	100	82.222	ENSOGAG00000010884	CPSF4	100	82.222	Otolemur_garnettii
ENSXCOG00000016040	cpsf4	100	71.533	ENSOARG00000018668	CPSF4	100	71.533	Ovis_aries
ENSXCOG00000016040	cpsf4	100	83.886	ENSPPAG00000043355	CPSF4	100	83.886	Pan_paniscus
ENSXCOG00000016040	cpsf4	100	84.360	ENSPPRG00000003134	CPSF4	100	84.360	Panthera_pardus
ENSXCOG00000016040	cpsf4	90	81.893	ENSPTIG00000005604	CPSF4	90	81.893	Panthera_tigris_altaica
ENSXCOG00000016040	cpsf4	100	83.886	ENSPTRG00000019453	CPSF4	100	83.886	Pan_troglodytes
ENSXCOG00000016040	cpsf4	100	83.886	ENSPANG00000023123	CPSF4	100	83.886	Papio_anubis
ENSXCOG00000016040	cpsf4	100	80.657	ENSPKIG00000014278	cpsf4	100	80.657	Paramormyrops_kingsleyae
ENSXCOG00000016040	cpsf4	81	59.813	ENSPSIG00000018198	-	100	59.813	Pelodiscus_sinensis
ENSXCOG00000016040	cpsf4	80	81.567	ENSPSIG00000011229	CPSF4	100	81.567	Pelodiscus_sinensis
ENSXCOG00000016040	cpsf4	100	78.030	ENSPMGG00000017735	cpsf4	100	78.030	Periophthalmus_magnuspinnatus
ENSXCOG00000016040	cpsf4	100	84.360	ENSPEMG00000004508	Cpsf4	100	84.360	Peromyscus_maniculatus_bairdii
ENSXCOG00000016040	cpsf4	100	82.593	ENSPCIG00000024776	CPSF4	100	82.593	Phascolarctos_cinereus
ENSXCOG00000016040	cpsf4	100	99.621	ENSPFOG00000014912	cpsf4	100	99.621	Poecilia_formosa
ENSXCOG00000016040	cpsf4	100	90.909	ENSPLAG00000009599	cpsf4	100	90.909	Poecilia_latipinna
ENSXCOG00000016040	cpsf4	100	99.621	ENSPMEG00000009790	cpsf4	100	99.621	Poecilia_mexicana
ENSXCOG00000016040	cpsf4	100	98.864	ENSPREG00000018166	cpsf4	100	98.864	Poecilia_reticulata
ENSXCOG00000016040	cpsf4	87	80.426	ENSPPYG00000017378	CPSF4	100	80.426	Pongo_abelii
ENSXCOG00000016040	cpsf4	100	82.222	ENSPCAG00000001892	CPSF4	100	82.222	Procavia_capensis
ENSXCOG00000016040	cpsf4	100	84.360	ENSPCOG00000012771	CPSF4	100	84.360	Propithecus_coquereli
ENSXCOG00000016040	cpsf4	100	77.778	ENSPVAG00000007531	CPSF4	100	78.148	Pteropus_vampyrus
ENSXCOG00000016040	cpsf4	100	88.679	ENSPNYG00000018559	cpsf4	100	88.679	Pundamilia_nyererei
ENSXCOG00000016040	cpsf4	100	82.246	ENSPNAG00000003736	cpsf4	100	83.696	Pygocentrus_nattereri
ENSXCOG00000016040	cpsf4	100	84.360	ENSRNOG00000000985	Cpsf4	100	84.360	Rattus_norvegicus
ENSXCOG00000016040	cpsf4	87	80.851	ENSRBIG00000033886	CPSF4	100	82.955	Rhinopithecus_bieti
ENSXCOG00000016040	cpsf4	100	83.886	ENSRROG00000040431	CPSF4	100	83.886	Rhinopithecus_roxellana
ENSXCOG00000016040	cpsf4	100	83.886	ENSSBOG00000020493	CPSF4	100	83.886	Saimiri_boliviensis_boliviensis
ENSXCOG00000016040	cpsf4	100	82.593	ENSSHAG00000011533	CPSF4	100	82.593	Sarcophilus_harrisii
ENSXCOG00000016040	cpsf4	100	82.246	ENSSFOG00015007883	cpsf4	100	82.246	Scleropages_formosus
ENSXCOG00000016040	cpsf4	100	83.774	ENSSMAG00000006374	cpsf4	100	83.774	Scophthalmus_maximus
ENSXCOG00000016040	cpsf4	100	90.602	ENSSDUG00000018887	cpsf4	100	90.602	Seriola_dumerili
ENSXCOG00000016040	cpsf4	100	90.226	ENSSLDG00000019078	cpsf4	100	90.226	Seriola_lalandi_dorsalis
ENSXCOG00000016040	cpsf4	87	81.277	ENSSARG00000012416	CPSF4	100	81.277	Sorex_araneus
ENSXCOG00000016040	cpsf4	100	81.852	ENSSPUG00000003549	CPSF4	100	81.852	Sphenodon_punctatus
ENSXCOG00000016040	cpsf4	97	60.156	ENSSPUG00000014803	-	98	60.156	Sphenodon_punctatus
ENSXCOG00000016040	cpsf4	100	84.091	ENSSPAG00000006174	cpsf4	100	84.091	Stegastes_partitus
ENSXCOG00000016040	cpsf4	100	79.545	ENSSSCG00000026896	CPSF4	100	79.545	Sus_scrofa
ENSXCOG00000016040	cpsf4	100	78.947	ENSTGUG00000007552	CPSF4	100	78.947	Taeniopygia_guttata
ENSXCOG00000016040	cpsf4	100	86.038	ENSTRUG00000024220	cpsf4	100	86.038	Takifugu_rubripes
ENSXCOG00000016040	cpsf4	100	87.170	ENSTNIG00000006265	cpsf4	100	87.170	Tetraodon_nigroviridis
ENSXCOG00000016040	cpsf4	87	71.915	ENSTBEG00000011406	CPSF4	100	71.915	Tupaia_belangeri
ENSXCOG00000016040	cpsf4	100	71.375	ENSTTRG00000003007	CPSF4	100	71.375	Tursiops_truncatus
ENSXCOG00000016040	cpsf4	92	79.339	ENSUAMG00000008051	CPSF4	85	78.099	Ursus_americanus
ENSXCOG00000016040	cpsf4	100	79.545	ENSUMAG00000009474	CPSF4	100	79.167	Ursus_maritimus
ENSXCOG00000016040	cpsf4	100	79.924	ENSVVUG00000008824	CPSF4	100	79.924	Vulpes_vulpes
ENSXCOG00000016040	cpsf4	100	78.136	ENSXETG00000009892	cpsf4	100	78.495	Xenopus_tropicalis
ENSXCOG00000016040	cpsf4	99	60.370	ENSXETG00000004641	cpsf4l	99	60.370	Xenopus_tropicalis
ENSXCOG00000016040	cpsf4	100	99.621	ENSXMAG00000024670	cpsf4	100	99.621	Xiphophorus_maculatus