EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000016471 (Gene tree)
Gene ID: -
Gene Symbol: si:dkey-208k4.2
Alias: fi35c12|wu:fi35c12
Full Name: si:dkey-208k4.2
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Plus strand
Length: 1999 bases
Position: chrKQ557208.1:16579443-16581441
Accession: ZDB-GENE-030131-6124
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000022054	zf-C2H2	PF00096.26	6.9e-18	1	3
ENSXCOP00000022054	zf-C2H2	PF00096.26	6.9e-18	2	3
ENSXCOP00000022054	zf-C2H2	PF00096.26	6.9e-18	3	3
ENSXCOP00000022055	zf-C2H2	PF00096.26	5e-15	1	3
ENSXCOP00000022055	zf-C2H2	PF00096.26	5e-15	2	3
ENSXCOP00000022055	zf-C2H2	PF00096.26	5e-15	3	3
ENSXCOP00000022055	zf-met	PF12874.7	7.3e-05	1	1
ENSXCOP00000022054	zf-met	PF12874.7	0.00014	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000022323	-	891	-	ENSXCOP00000022055	296 (aa)	-	-
ENSXCOT00000022322	-	1041	-	ENSXCOP00000022054	346 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000016471's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000016471's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000016471	si:dkey-208k4.2	81	30.288	ENSXCOG00000003472	-	83	30.189

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000016471	si:dkey-208k4.2	96	72.391	ENSKMAG00000020467	si:dkey-208k4.2	96	70.787	Kryptolebias_marmoratus
ENSXCOG00000016471	si:dkey-208k4.2	98	82.123	ENSPREG00000010813	si:dkey-208k4.2	98	82.123	Poecilia_reticulata