EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXCOG00000016586 (Gene tree)
Gene ID: -
Gene Symbol: upf3b
Alias: zgc:174674|zgc:66390
Full Name: UPF3B%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Plus strand
Length: 6109 bases
Position: chrKQ557216.1:8858408-8864516
Accession: ZDB-GENE-040426-1630
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000022328	Smg4_UPF3	PF03467.15	1.3e-53	1	1
ENSXCOP00000022346	Smg4_UPF3	PF03467.15	4.1e-53	1	1
ENSXCOP00000022354	Smg4_UPF3	PF03467.15	4.8e-41	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000022619	-	606	-	ENSXCOP00000022346	201 (aa)	-	-
ENSXCOT00000022627	-	450	-	ENSXCOP00000022354	149 (aa)	-	-
ENSXCOT00000022601	-	1308	-	ENSXCOP00000022328	435 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000016586's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000016586's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000016586	upf3b	98	65.566	ENSG00000125351	UPF3B	96	65.566	Homo_sapiens
ENSXCOG00000016586	upf3b	98	89.796	ENSAPOG00000012775	upf3b	100	73.362	Acanthochromis_polyacanthus
ENSXCOG00000016586	upf3b	97	65.877	ENSAMEG00000000163	UPF3B	93	53.846	Ailuropoda_melanoleuca
ENSXCOG00000016586	upf3b	83	71.687	ENSACIG00000020468	upf3a	74	72.321	Amphilophus_citrinellus
ENSXCOG00000016586	upf3b	98	85.714	ENSACIG00000013582	upf3b	100	66.161	Amphilophus_citrinellus
ENSXCOG00000016586	upf3b	98	87.245	ENSAOCG00000000706	upf3b	100	72.867	Amphiprion_ocellaris
ENSXCOG00000016586	upf3b	98	89.286	ENSAPEG00000005545	upf3b	100	74.017	Amphiprion_percula
ENSXCOG00000016586	upf3b	98	88.776	ENSATEG00000018742	upf3b	100	72.747	Anabas_testudineus
ENSXCOG00000016586	upf3b	97	68.812	ENSACAG00000003625	UPF3B	94	55.227	Anolis_carolinensis
ENSXCOG00000016586	upf3b	95	60.140	ENSANAG00000033169	-	71	60.335	Aotus_nancymaae
ENSXCOG00000016586	upf3b	99	64.977	ENSANAG00000021894	-	97	65.550	Aotus_nancymaae
ENSXCOG00000016586	upf3b	97	61.972	ENSANAG00000025598	-	81	58.852	Aotus_nancymaae
ENSXCOG00000016586	upf3b	97	89.744	ENSACLG00000001649	upf3b	100	71.522	Astatotilapia_calliptera
ENSXCOG00000016586	upf3b	95	84.615	ENSAMXG00000000199	upf3b	92	81.622	Astyanax_mexicanus
ENSXCOG00000016586	upf3b	97	66.197	ENSBTAG00000035615	UPF3B	91	65.550	Bos_taurus
ENSXCOG00000016586	upf3b	74	68.468	ENSBTAG00000047365	-	65	65.278	Bos_taurus
ENSXCOG00000016586	upf3b	99	63.721	ENSCJAG00000004975	UPF3B	99	63.721	Callithrix_jacchus
ENSXCOG00000016586	upf3b	97	65.403	ENSCAFG00000018426	UPF3B	95	52.036	Canis_familiaris
ENSXCOG00000016586	upf3b	93	63.871	ENSCAFG00020004074	UPF3B	75	59.322	Canis_lupus_dingo
ENSXCOG00000016586	upf3b	97	66.197	ENSCHIG00000000247	-	93	52.402	Capra_hircus
ENSXCOG00000016586	upf3b	97	65.728	ENSCHIG00000018011	-	91	65.072	Capra_hircus
ENSXCOG00000016586	upf3b	97	65.728	ENSTSYG00000014690	UPF3B	96	60.930	Carlito_syrichta
ENSXCOG00000016586	upf3b	97	42.157	ENSCCAG00000021964	-	86	45.078	Cebus_capucinus
ENSXCOG00000016586	upf3b	94	53.922	ENSCCAG00000029813	-	51	59.091	Cebus_capucinus
ENSXCOG00000016586	upf3b	99	64.186	ENSCATG00000017506	UPF3B	97	65.550	Cercocebus_atys
ENSXCOG00000016586	upf3b	97	66.825	ENSCLAG00000003260	UPF3B	96	53.744	Chinchilla_lanigera
ENSXCOG00000016586	upf3b	56	61.446	ENSCLAG00000000093	-	53	63.158	Chinchilla_lanigera
ENSXCOG00000016586	upf3b	97	65.403	ENSCSAG00000018348	UPF3B	98	51.760	Chlorocebus_sabaeus
ENSXCOG00000016586	upf3b	76	66.372	ENSCPBG00000022854	-	86	66.372	Chrysemys_picta_bellii
ENSXCOG00000016586	upf3b	93	71.034	ENSCPBG00000020685	UPF3B	93	54.338	Chrysemys_picta_bellii
ENSXCOG00000016586	upf3b	78	46.795	ENSCING00000008396	-	88	47.857	Ciona_intestinalis
ENSXCOG00000016586	upf3b	97	65.403	ENSCANG00000029220	UPF3B	91	65.550	Colobus_angolensis_palliatus
ENSXCOG00000016586	upf3b	97	63.507	ENSCGRG00001013643	-	57	63.679	Cricetulus_griseus_chok1gshd
ENSXCOG00000016586	upf3b	97	63.507	ENSCGRG00001006858	-	94	51.794	Cricetulus_griseus_chok1gshd
ENSXCOG00000016586	upf3b	78	76.282	ENSCGRG00000007627	Upf3b	93	54.962	Cricetulus_griseus_crigri
ENSXCOG00000016586	upf3b	98	89.286	ENSCSEG00000002046	upf3b	99	69.247	Cynoglossus_semilaevis
ENSXCOG00000016586	upf3b	97	93.846	ENSCVAG00000005030	upf3b	100	79.869	Cyprinodon_variegatus
ENSXCOG00000016586	upf3b	93	84.286	ENSDARG00000000489	upf3b	95	64.574	Danio_rerio
ENSXCOG00000016586	upf3b	97	66.351	ENSDNOG00000008665	UPF3B	93	52.747	Dasypus_novemcinctus
ENSXCOG00000016586	upf3b	97	64.929	ENSDORG00000006077	Upf3b	93	51.810	Dipodomys_ordii
ENSXCOG00000016586	upf3b	99	64.186	ENSEASG00005012919	UPF3B	93	47.178	Equus_asinus_asinus
ENSXCOG00000016586	upf3b	99	64.186	ENSECAG00000016947	UPF3B	93	47.178	Equus_caballus
ENSXCOG00000016586	upf3b	98	82.741	ENSELUG00000020389	upf3b	100	55.227	Esox_lucius
ENSXCOG00000016586	upf3b	97	65.728	ENSFCAG00000004388	UPF3B	96	52.735	Felis_catus
ENSXCOG00000016586	upf3b	97	65.138	ENSFALG00000001569	UPF3B	94	45.648	Ficedula_albicollis
ENSXCOG00000016586	upf3b	97	65.877	ENSFDAG00000018869	UPF3B	96	53.084	Fukomys_damarensis
ENSXCOG00000016586	upf3b	97	92.821	ENSFHEG00000017895	upf3b	100	76.739	Fundulus_heteroclitus
ENSXCOG00000016586	upf3b	95	62.252	ENSFHEG00000010418	upf3a	55	79.310	Fundulus_heteroclitus
ENSXCOG00000016586	upf3b	98	78.680	ENSGMOG00000001621	upf3b	100	60.169	Gadus_morhua
ENSXCOG00000016586	upf3b	97	65.258	ENSGALG00000008618	UPF3B	94	54.688	Gallus_gallus
ENSXCOG00000016586	upf3b	76	69.027	ENSGALG00000016815	-	75	65.789	Gallus_gallus
ENSXCOG00000016586	upf3b	98	97.959	ENSGAFG00000000829	upf3b	100	86.976	Gambusia_affinis
ENSXCOG00000016586	upf3b	97	85.641	ENSGACG00000017435	upf3b	100	85.992	Gasterosteus_aculeatus
ENSXCOG00000016586	upf3b	97	72.500	ENSGAGG00000001219	UPF3B	94	57.763	Gopherus_agassizii
ENSXCOG00000016586	upf3b	79	62.712	ENSGAGG00000001952	UPF3A	80	67.143	Gopherus_agassizii
ENSXCOG00000016586	upf3b	97	65.403	ENSGGOG00000023995	UPF3B	91	65.550	Gorilla_gorilla
ENSXCOG00000016586	upf3b	97	89.744	ENSHBUG00000017393	upf3b	100	71.522	Haplochromis_burtoni
ENSXCOG00000016586	upf3b	97	64.929	ENSHGLG00000019582	-	96	52.643	Heterocephalus_glaber_female
ENSXCOG00000016586	upf3b	97	64.929	ENSHGLG00100002042	-	96	50.000	Heterocephalus_glaber_male
ENSXCOG00000016586	upf3b	98	65.517	ENSHCOG00000013985	upf3a	66	71.698	Hippocampus_comes
ENSXCOG00000016586	upf3b	98	85.714	ENSHCOG00000017004	upf3b	100	65.443	Hippocampus_comes
ENSXCOG00000016586	upf3b	97	83.163	ENSIPUG00000019249	upf3b	100	66.094	Ictalurus_punctatus
ENSXCOG00000016586	upf3b	74	65.766	ENSSTOG00000030282	-	61	62.500	Ictidomys_tridecemlineatus
ENSXCOG00000016586	upf3b	97	65.877	ENSSTOG00000001101	UPF3B	96	52.643	Ictidomys_tridecemlineatus
ENSXCOG00000016586	upf3b	97	65.403	ENSJJAG00000000053	Upf3b	93	51.794	Jaculus_jaculus
ENSXCOG00000016586	upf3b	74	65.766	ENSJJAG00000018099	-	68	62.500	Jaculus_jaculus
ENSXCOG00000016586	upf3b	98	89.286	ENSKMAG00000020300	upf3b	100	74.728	Kryptolebias_marmoratus
ENSXCOG00000016586	upf3b	98	85.204	ENSLBEG00000028689	upf3b	57	86.100	Labrus_bergylta
ENSXCOG00000016586	upf3b	96	76.684	ENSLACG00000008691	UPF3B	100	54.507	Latimeria_chalumnae
ENSXCOG00000016586	upf3b	98	79.188	ENSLOCG00000015238	upf3b	98	64.253	Lepisosteus_oculatus
ENSXCOG00000016586	upf3b	98	65.094	ENSLAFG00000001267	UPF3B	96	53.070	Loxodonta_africana
ENSXCOG00000016586	upf3b	98	59.024	ENSMFAG00000045275	-	94	59.024	Macaca_fascicularis
ENSXCOG00000016586	upf3b	99	64.186	ENSMFAG00000045414	UPF3B	97	65.550	Macaca_fascicularis
ENSXCOG00000016586	upf3b	98	57.073	ENSMMUG00000046682	-	84	61.628	Macaca_mulatta
ENSXCOG00000016586	upf3b	99	64.186	ENSMMUG00000020222	UPF3B	97	65.550	Macaca_mulatta
ENSXCOG00000016586	upf3b	99	64.186	ENSMNEG00000039794	UPF3B	97	65.550	Macaca_nemestrina
ENSXCOG00000016586	upf3b	98	59.024	ENSMNEG00000040898	-	94	59.024	Macaca_nemestrina
ENSXCOG00000016586	upf3b	99	64.186	ENSMLEG00000010999	UPF3B	97	65.550	Mandrillus_leucophaeus
ENSXCOG00000016586	upf3b	97	89.744	ENSMZEG00005007871	upf3b	100	71.522	Maylandia_zebra
ENSXCOG00000016586	upf3b	59	77.311	ENSMGAG00000007728	UPF3B	91	55.899	Meleagris_gallopavo
ENSXCOG00000016586	upf3b	97	61.611	ENSMAUG00000008705	Upf3b	83	53.652	Mesocricetus_auratus
ENSXCOG00000016586	upf3b	97	66.197	ENSMICG00000001743	UPF3B	84	66.029	Microcebus_murinus
ENSXCOG00000016586	upf3b	54	64.198	ENSMICG00000042420	-	54	60.241	Microcebus_murinus
ENSXCOG00000016586	upf3b	97	64.929	ENSMOCG00000017893	Upf3b	93	51.193	Microtus_ochrogaster
ENSXCOG00000016586	upf3b	95	88.732	ENSMMOG00000004183	upf3b	100	70.370	Mola_mola
ENSXCOG00000016586	upf3b	78	78.205	ENSMODG00000010232	UPF3B	93	56.000	Monodelphis_domestica
ENSXCOG00000016586	upf3b	95	60.284	ENSMALG00000002454	-	60	73.148	Monopterus_albus
ENSXCOG00000016586	upf3b	97	89.744	ENSMALG00000008042	upf3b	100	69.957	Monopterus_albus
ENSXCOG00000016586	upf3b	97	63.981	MGP_CAROLIEiJ_G0032999	Upf3b	93	50.893	Mus_caroli
ENSXCOG00000016586	upf3b	97	63.981	ENSMUSG00000036572	Upf3b	93	50.783	Mus_musculus
ENSXCOG00000016586	upf3b	97	64.455	MGP_PahariEiJ_G0031543	Upf3b	93	51.562	Mus_pahari
ENSXCOG00000016586	upf3b	97	63.981	MGP_SPRETEiJ_G0034152	Upf3b	93	50.783	Mus_spretus
ENSXCOG00000016586	upf3b	97	66.197	ENSMPUG00000001531	UPF3B	95	52.036	Mustela_putorius_furo
ENSXCOG00000016586	upf3b	97	65.728	ENSMLUG00000010821	UPF3B	93	54.072	Myotis_lucifugus
ENSXCOG00000016586	upf3b	97	63.981	ENSNGAG00000008231	Upf3b	93	50.450	Nannospalax_galili
ENSXCOG00000016586	upf3b	97	89.583	ENSNBRG00000011560	upf3b	96	90.780	Neolamprologus_brichardi
ENSXCOG00000016586	upf3b	98	56.281	ENSNLEG00000027516	-	76	60.736	Nomascus_leucogenys
ENSXCOG00000016586	upf3b	86	73.410	ENSNLEG00000014897	UPF3B	88	54.087	Nomascus_leucogenys
ENSXCOG00000016586	upf3b	98	58.673	ENSODEG00000006064	-	77	64.706	Octodon_degus
ENSXCOG00000016586	upf3b	98	54.167	ENSODEG00000007164	-	91	53.241	Octodon_degus
ENSXCOG00000016586	upf3b	97	65.403	ENSODEG00000002186	-	96	51.528	Octodon_degus
ENSXCOG00000016586	upf3b	78	61.207	ENSODEG00000009176	-	57	60.417	Octodon_degus
ENSXCOG00000016586	upf3b	98	48.731	ENSODEG00000000596	-	67	63.158	Octodon_degus
ENSXCOG00000016586	upf3b	97	91.282	ENSONIG00000002536	upf3b	100	73.333	Oreochromis_niloticus
ENSXCOG00000016586	upf3b	97	65.877	ENSOCUG00000010213	UPF3B	98	51.250	Oryctolagus_cuniculus
ENSXCOG00000016586	upf3b	97	86.154	ENSORLG00000001026	upf3b	100	71.179	Oryzias_latipes
ENSXCOG00000016586	upf3b	97	86.154	ENSORLG00020003758	upf3b	92	87.571	Oryzias_latipes_hni
ENSXCOG00000016586	upf3b	97	85.641	ENSORLG00015012954	upf3b	100	70.961	Oryzias_latipes_hsok
ENSXCOG00000016586	upf3b	97	86.154	ENSOMEG00000014736	upf3b	100	71.397	Oryzias_melastigma
ENSXCOG00000016586	upf3b	97	64.929	ENSOGAG00000033003	-	98	52.402	Otolemur_garnettii
ENSXCOG00000016586	upf3b	97	65.403	ENSOGAG00000004643	-	93	53.620	Otolemur_garnettii
ENSXCOG00000016586	upf3b	97	65.278	ENSOARG00000016051	-	93	52.061	Ovis_aries
ENSXCOG00000016586	upf3b	97	65.403	ENSPPAG00000040390	UPF3B	91	65.550	Pan_paniscus
ENSXCOG00000016586	upf3b	97	65.728	ENSPPRG00000023536	UPF3B	96	52.967	Panthera_pardus
ENSXCOG00000016586	upf3b	97	65.728	ENSPTIG00000015264	UPF3B	88	65.072	Panthera_tigris_altaica
ENSXCOG00000016586	upf3b	97	65.403	ENSPTRG00000022228	UPF3B	91	65.550	Pan_troglodytes
ENSXCOG00000016586	upf3b	99	64.186	ENSPANG00000000900	UPF3B	97	65.550	Papio_anubis
ENSXCOG00000016586	upf3b	97	58.824	ENSPANG00000029350	-	82	61.628	Papio_anubis
ENSXCOG00000016586	upf3b	98	81.818	ENSPKIG00000019226	upf3b	98	79.605	Paramormyrops_kingsleyae
ENSXCOG00000016586	upf3b	57	80.000	ENSPSIG00000005833	UPF3B	65	77.596	Pelodiscus_sinensis
ENSXCOG00000016586	upf3b	97	85.128	ENSPMGG00000016067	upf3b	93	86.047	Periophthalmus_magnuspinnatus
ENSXCOG00000016586	upf3b	97	64.455	ENSPEMG00000012352	Upf3b	93	50.787	Peromyscus_maniculatus_bairdii
ENSXCOG00000016586	upf3b	89	60.335	ENSPCIG00000019590	-	63	65.278	Phascolarctos_cinereus
ENSXCOG00000016586	upf3b	78	76.724	ENSPCIG00000028914	UPF3B	83	53.750	Phascolarctos_cinereus
ENSXCOG00000016586	upf3b	98	97.449	ENSPLAG00000019922	upf3b	100	86.313	Poecilia_latipinna
ENSXCOG00000016586	upf3b	98	97.449	ENSPLAG00000005105	upf3b	100	93.424	Poecilia_latipinna
ENSXCOG00000016586	upf3b	99	60.377	ENSPLAG00000011960	upf3a	66	72.807	Poecilia_latipinna
ENSXCOG00000016586	upf3b	98	97.449	ENSPMEG00000023532	upf3b	100	85.872	Poecilia_mexicana
ENSXCOG00000016586	upf3b	100	98.658	ENSPREG00000012214	upf3b	100	98.658	Poecilia_reticulata
ENSXCOG00000016586	upf3b	81	71.074	ENSPREG00000005566	upf3a	64	74.312	Poecilia_reticulata
ENSXCOG00000016586	upf3b	97	65.403	ENSPPYG00000020675	-	63	65.566	Pongo_abelii
ENSXCOG00000016586	upf3b	97	65.403	ENSPCAG00000009464	UPF3B	97	50.313	Procavia_capensis
ENSXCOG00000016586	upf3b	97	66.197	ENSPCOG00000021960	UPF3B	84	65.550	Propithecus_coquereli
ENSXCOG00000016586	upf3b	93	64.331	ENSPVAG00000014075	UPF3B	58	54.770	Pteropus_vampyrus
ENSXCOG00000016586	upf3b	97	89.744	ENSPNYG00000009846	upf3b	100	72.489	Pundamilia_nyererei
ENSXCOG00000016586	upf3b	97	84.694	ENSPNAG00000021528	upf3b	94	83.505	Pygocentrus_nattereri
ENSXCOG00000016586	upf3b	97	63.981	ENSRNOG00000039994	Upf3b	93	50.559	Rattus_norvegicus
ENSXCOG00000016586	upf3b	60	76.033	ENSRBIG00000037219	UPF3B	97	52.895	Rhinopithecus_bieti
ENSXCOG00000016586	upf3b	99	64.186	ENSRROG00000041031	UPF3B	97	65.550	Rhinopithecus_roxellana
ENSXCOG00000016586	upf3b	97	65.403	ENSSBOG00000019740	UPF3B	99	64.115	Saimiri_boliviensis_boliviensis
ENSXCOG00000016586	upf3b	97	63.380	ENSSHAG00000008634	UPF3B	94	52.423	Sarcophilus_harrisii
ENSXCOG00000016586	upf3b	97	84.184	ENSSFOG00015005614	upf3b	100	61.790	Scleropages_formosus
ENSXCOG00000016586	upf3b	99	60.000	ENSSMAG00000003858	upf3a	76	71.053	Scophthalmus_maximus
ENSXCOG00000016586	upf3b	98	89.286	ENSSMAG00000012913	upf3b	100	90.272	Scophthalmus_maximus
ENSXCOG00000016586	upf3b	98	90.816	ENSSDUG00000005682	upf3b	100	72.078	Seriola_dumerili
ENSXCOG00000016586	upf3b	83	71.687	ENSSDUG00000009680	upf3a	64	74.286	Seriola_dumerili
ENSXCOG00000016586	upf3b	98	90.306	ENSSLDG00000003130	upf3b	100	71.429	Seriola_lalandi_dorsalis
ENSXCOG00000016586	upf3b	78	75.000	ENSSARG00000004147	UPF3B	93	53.695	Sorex_araneus
ENSXCOG00000016586	upf3b	83	71.687	ENSSPAG00000007938	upf3a	75	68.902	Stegastes_partitus
ENSXCOG00000016586	upf3b	98	88.265	ENSSPAG00000009989	upf3b	99	73.187	Stegastes_partitus
ENSXCOG00000016586	upf3b	97	65.728	ENSSSCG00000012617	UPF3B	98	52.371	Sus_scrofa
ENSXCOG00000016586	upf3b	78	78.205	ENSTGUG00000003413	UPF3B	93	57.323	Taeniopygia_guttata
ENSXCOG00000016586	upf3b	98	85.714	ENSTRUG00000010645	upf3b	100	66.376	Takifugu_rubripes
ENSXCOG00000016586	upf3b	95	83.916	ENSTNIG00000015763	upf3b	100	57.143	Tetraodon_nigroviridis
ENSXCOG00000016586	upf3b	93	64.968	ENSTBEG00000003229	UPF3B	72	55.124	Tupaia_belangeri
ENSXCOG00000016586	upf3b	93	65.806	ENSUAMG00000024565	UPF3B	73	57.018	Ursus_americanus
ENSXCOG00000016586	upf3b	67	76.296	ENSVPAG00000009971	UPF3B	95	52.525	Vicugna_pacos
ENSXCOG00000016586	upf3b	99	63.889	ENSVVUG00000011594	UPF3B	97	65.550	Vulpes_vulpes
ENSXCOG00000016586	upf3b	97	68.718	ENSXETG00000007440	upf3b	84	74.742	Xenopus_tropicalis
ENSXCOG00000016586	upf3b	98	98.469	ENSXMAG00000013680	upf3b	100	88.079	Xiphophorus_maculatus