EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000016687 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Plus strand
Length: 4045 bases
Position: chrKQ557208.1:17821049-17825093
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000022339	MMR_HSR1	PF01926.23	3.5e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000022612	-	552	-	ENSXCOP00000022339	183 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000016687's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000016687's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000016687	-	85	43.827	ENSXCOG00000003892	arl4d	81	43.827
ENSXCOG00000016687	-	85	32.484	ENSXCOG00000013402	arl8ba	95	32.484
ENSXCOG00000016687	-	87	33.721	ENSXCOG00000009364	arfrp1	86	33.721
ENSXCOG00000016687	-	83	48.026	ENSXCOG00000002882	-	84	48.026
ENSXCOG00000016687	-	94	47.191	ENSXCOG00000016119	arl4cb	88	47.191
ENSXCOG00000016687	-	94	45.930	ENSXCOG00000006377	arl2	93	45.930
ENSXCOG00000016687	-	98	92.818	ENSXCOG00000004139	arf2b	100	92.818
ENSXCOG00000016687	-	97	91.061	ENSXCOG00000015162	-	99	91.061
ENSXCOG00000016687	-	84	45.455	ENSXCOG00000011060	arl11	90	45.455
ENSXCOG00000016687	-	98	92.265	ENSXCOG00000019704	arf3b	97	94.706
ENSXCOG00000016687	-	97	33.155	ENSXCOG00000016955	arl13b	51	33.155
ENSXCOG00000016687	-	96	48.864	ENSXCOG00000017380	arl5c	98	48.864
ENSXCOG00000016687	-	98	91.667	ENSXCOG00000001487	-	97	94.706
ENSXCOG00000016687	-	86	47.273	ENSXCOG00000003923	-	81	47.273
ENSXCOG00000016687	-	90	33.133	ENSXCOG00000004543	arl8bb	89	33.133
ENSXCOG00000016687	-	54	36.364	ENSXCOG00000006154	-	66	36.364
ENSXCOG00000016687	-	91	45.509	ENSXCOG00000003337	arl3l2	89	45.509
ENSXCOG00000016687	-	95	81.609	ENSXCOG00000020384	-	97	81.609
ENSXCOG00000016687	-	87	51.875	ENSXCOG00000011539	arl8	73	51.875
ENSXCOG00000016687	-	91	46.386	ENSXCOG00000005902	arl3	78	46.386
ENSXCOG00000016687	-	86	47.561	ENSXCOG00000007236	arl4aa	82	47.561

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000016687	-	98	96.111	ENSACIG00000012192	-	100	96.111	Amphilophus_citrinellus
ENSXCOG00000016687	-	83	98.013	ENSAOCG00000001275	-	88	98.013	Amphiprion_ocellaris
ENSXCOG00000016687	-	98	97.778	ENSAPEG00000016909	-	100	97.778	Amphiprion_percula
ENSXCOG00000016687	-	98	98.333	ENSATEG00000003174	-	100	98.333	Anabas_testudineus
ENSXCOG00000016687	-	98	96.111	ENSACLG00000004123	-	100	96.111	Astatotilapia_calliptera
ENSXCOG00000016687	-	98	92.818	ENSAMXG00000019845	arf1	100	92.818	Astyanax_mexicanus
ENSXCOG00000016687	-	98	100.000	ENSCVAG00000013374	-	100	100.000	Cyprinodon_variegatus
ENSXCOG00000016687	-	98	92.818	ENSDARG00000009484	arf1	100	92.818	Danio_rerio
ENSXCOG00000016687	-	98	93.370	ENSELUG00000022533	arf1	79	93.370	Esox_lucius
ENSXCOG00000016687	-	98	99.444	ENSFHEG00000005859	-	100	99.444	Fundulus_heteroclitus
ENSXCOG00000016687	-	96	88.000	ENSGMOG00000000429	arf1	96	88.000	Gadus_morhua
ENSXCOG00000016687	-	100	99.454	ENSGAFG00000018151	-	100	100.000	Gambusia_affinis
ENSXCOG00000016687	-	98	86.667	ENSGACG00000014195	-	97	86.667	Gasterosteus_aculeatus
ENSXCOG00000016687	-	98	96.111	ENSHBUG00000002636	-	100	96.111	Haplochromis_burtoni
ENSXCOG00000016687	-	98	92.265	ENSIPUG00000006311	arf1	100	92.265	Ictalurus_punctatus
ENSXCOG00000016687	-	98	95.000	ENSKMAG00000018315	-	100	95.000	Kryptolebias_marmoratus
ENSXCOG00000016687	-	97	89.385	ENSLBEG00000001998	arf1	99	89.385	Labrus_bergylta
ENSXCOG00000016687	-	100	87.978	ENSLBEG00000023263	-	100	87.978	Labrus_bergylta
ENSXCOG00000016687	-	98	98.333	ENSMAMG00000001553	-	100	98.333	Mastacembelus_armatus
ENSXCOG00000016687	-	98	96.111	ENSMZEG00005022594	-	100	96.111	Maylandia_zebra
ENSXCOG00000016687	-	98	97.778	ENSMALG00000004269	-	100	97.778	Monopterus_albus
ENSXCOG00000016687	-	98	96.111	ENSNBRG00000016455	-	100	96.111	Neolamprologus_brichardi
ENSXCOG00000016687	-	98	96.111	ENSONIG00000001286	-	100	96.111	Oreochromis_niloticus
ENSXCOG00000016687	-	98	97.222	ENSORLG00000023270	-	100	97.222	Oryzias_latipes
ENSXCOG00000016687	-	98	96.667	ENSORLG00020006712	-	100	96.667	Oryzias_latipes_hni
ENSXCOG00000016687	-	98	97.222	ENSORLG00015019836	-	100	97.222	Oryzias_latipes_hsok
ENSXCOG00000016687	-	98	97.222	ENSOMEG00000023784	-	100	97.222	Oryzias_melastigma
ENSXCOG00000016687	-	98	88.950	ENSPMGG00000014174	arf1	98	91.176	Periophthalmus_magnuspinnatus
ENSXCOG00000016687	-	98	92.778	ENSPMAG00000002035	arf1	100	92.778	Petromyzon_marinus
ENSXCOG00000016687	-	98	100.000	ENSPFOG00000014787	-	100	100.000	Poecilia_formosa
ENSXCOG00000016687	-	98	100.000	ENSPLAG00000001041	-	100	100.000	Poecilia_latipinna
ENSXCOG00000016687	-	98	100.000	ENSPMEG00000024077	-	100	100.000	Poecilia_mexicana
ENSXCOG00000016687	-	100	99.454	ENSPREG00000009009	-	100	100.000	Poecilia_reticulata
ENSXCOG00000016687	-	98	96.111	ENSPNYG00000009472	-	100	96.111	Pundamilia_nyererei
ENSXCOG00000016687	-	92	95.266	ENSPNAG00000000098	arf1	93	95.266	Pygocentrus_nattereri
ENSXCOG00000016687	-	97	75.978	YDL137W	-	99	75.978	Saccharomyces_cerevisiae
ENSXCOG00000016687	-	98	76.667	YDL192W	-	99	76.667	Saccharomyces_cerevisiae
ENSXCOG00000016687	-	98	91.111	ENSSMAG00000006125	-	100	91.111	Scophthalmus_maximus
ENSXCOG00000016687	-	98	97.222	ENSSDUG00000017356	-	100	97.222	Seriola_dumerili
ENSXCOG00000016687	-	98	97.222	ENSSLDG00000008504	-	100	97.222	Seriola_lalandi_dorsalis
ENSXCOG00000016687	-	98	98.333	ENSSPAG00000011431	-	100	98.333	Stegastes_partitus
ENSXCOG00000016687	-	98	95.000	ENSTRUG00000019870	-	100	95.000	Takifugu_rubripes
ENSXCOG00000016687	-	98	93.333	ENSTNIG00000011685	-	100	93.333	Tetraodon_nigroviridis
ENSXCOG00000016687	-	98	100.000	ENSXMAG00000009193	-	100	100.000	Xiphophorus_maculatus