EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSXCOG00000016788 (Gene tree)
Gene ID
-
Gene Symbol
rab5c
Alias
wu:fb98b08|wu:fi16g01
Full Name
RAB5C%2C member RAS oncogene family
Gene Type
protein_coding
Species
Xiphophorus_couchianus
Status
putative
Strand
Plus strand
Length
6974 bases
Position
chrKQ557208.1:18475450-18482423
Accession
ZDB-GENE-031118-30
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSXCOP00000022960MMR_HSR1PF01926.236e-0511
ENSXCOP00000022961MMR_HSR1PF01926.236.2e-0511
ENSXCOP00000022898MMR_HSR1PF01926.236.3e-0511
ENSXCOP00000022982MMR_HSR1PF01926.236.4e-0511
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSXCOT00000023237-648-ENSXCOP00000022960215 (aa)--
ENSXCOT00000023174-660-ENSXCOP00000022898219 (aa)--
ENSXCOT00000023238-660-ENSXCOP00000022961219 (aa)--
ENSXCOT00000023259-663-ENSXCOP00000022982220 (aa)--
Gene Model
Click here to download ENSXCOG00000016788's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000016788's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSXCOG00000016788rab5c7537.805ENSXCOG00000003428rab42a7537.805
ENSXCOG00000016788rab5c8331.122ENSXCOG00000016370RAB298132.934
ENSXCOG00000016788rab5c5530.894ENSXCOG00000013402arl8ba7030.894
ENSXCOG00000016788rab5c7653.988ENSXCOG00000016452rab22a8453.988
ENSXCOG00000016788rab5c9040.306ENSXCOG00000002232rab6bb8442.286
ENSXCOG00000016788rab5c7843.713ENSXCOG00000006259rab6a8043.713
ENSXCOG00000016788rab5c6430.216ENSXCOG00000011229rras27430.370
ENSXCOG00000016788rab5c9141.584ENSXCOG00000001357rab11a6247.239
ENSXCOG00000016788rab5c9244.279ENSXCOG00000020125rab25a9448.201
ENSXCOG00000016788rab5c9884.722ENSXCOG00000020121rab5aa9983.333
ENSXCOG00000016788rab5c7534.356ENSXCOG00000020508kras9034.375
ENSXCOG00000016788rab5c7945.977ENSXCOG00000004227rab25b8146.746
ENSXCOG00000016788rab5c7434.375ENSXCOG00000011864rab236836.875
ENSXCOG00000016788rab5c6733.103ENSXCOG00000019281rheb7933.103
ENSXCOG00000016788rab5c7837.791ENSXCOG00000019310rab127037.791
ENSXCOG00000016788rab5c7431.677ENSXCOG00000007650rras8131.677
ENSXCOG00000016788rab5c7537.805ENSXCOG00000006807rab39bb7737.805
ENSXCOG00000016788rab5c9591.866ENSXCOG00000006300-9989.640
ENSXCOG00000016788rab5c7348.408ENSXCOG00000004226rab11al7348.408
ENSXCOG00000016788rab5c9134.483ENSXCOG00000009094rab9b8135.928
ENSXCOG00000016788rab5c7333.125ENSXCOG00000009541rab34a6233.125
ENSXCOG00000016788rab5c5747.541ENSXCOG00000009194-9047.541
ENSXCOG00000016788rab5c7647.239ENSXCOG00000009190-7547.239
ENSXCOG00000016788rab5c8343.258ENSXCOG00000015802RAB418443.258
ENSXCOG00000016788rab5c7647.239ENSXCOG00000008042-7547.239
ENSXCOG00000016788rab5c7542.857ENSXCOG00000019533rab138642.857
ENSXCOG00000016788rab5c8743.684ENSXCOG00000010695zgc:1719278046.012
ENSXCOG00000016788rab5c7537.952ENSXCOG00000013344rab33a6436.464
ENSXCOG00000016788rab5c7831.953ENSXCOG00000020608hrasb9332.576
ENSXCOG00000016788rab5c8043.182ENSXCOG00000019921rab7a9939.320
ENSXCOG00000016788rab5c5631.452ENSXCOG00000004543arl8bb6331.452
ENSXCOG00000016788rab5c8035.714ENSXCOG00000020575RAB9A8235.676
ENSXCOG00000016788rab5c7737.143ENSXCOG00000019054rab9a7837.143
ENSXCOG00000016788rab5c9144.388ENSXCOG00000013842rab1ab8047.239
ENSXCOG00000016788rab5c7737.912ENSXCOG00000000469rab33ba7537.430
ENSXCOG00000016788rab5c7735.088ENSXCOG00000012032-7735.088
ENSXCOG00000016788rab5c8344.693ENSXCOG00000010770-6546.626
ENSXCOG00000016788rab5c7436.646ENSXCOG00000003192-7536.646
ENSXCOG00000016788rab5c8537.968ENSXCOG00000018683zgc:1015597937.968
ENSXCOG00000016788rab5c8634.921ENSXCOG00000008410si:dkey-34d22.57536.747
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSXCOG00000016788rab5c9891.204ENSG00000108774RAB5C10095.604Homo_sapiens
ENSXCOG00000016788rab5c10095.909ENSAPOG00000016864rab5c10095.909Acanthochromis_polyacanthus
ENSXCOG00000016788rab5c9891.204ENSAMEG00000006003RAB5C9989.352Ailuropoda_melanoleuca
ENSXCOG00000016788rab5c10096.818ENSACIG00000010896rab5c10096.818Amphilophus_citrinellus
ENSXCOG00000016788rab5c10095.909ENSAOCG00000016614rab5c10095.909Amphiprion_ocellaris
ENSXCOG00000016788rab5c9995.775ENSAPEG00000017868-9995.814Amphiprion_percula
ENSXCOG00000016788rab5c9997.235ENSATEG00000001937rab5c9997.235Anabas_testudineus
ENSXCOG00000016788rab5c9393.171ENSANAG00000025390RAB5C10090.732Aotus_nancymaae
ENSXCOG00000016788rab5c9990.094ENSACLG00000008615-10088.739Astatotilapia_calliptera
ENSXCOG00000016788rab5c10095.455ENSACLG00000002706rab5c10095.455Astatotilapia_calliptera
ENSXCOG00000016788rab5c9890.995ENSAMXG00000037267-10090.995Astyanax_mexicanus
ENSXCOG00000016788rab5c10097.285ENSAMXG00000043717rab5c10097.285Astyanax_mexicanus
ENSXCOG00000016788rab5c9891.204ENSBTAG00000006982RAB5C9988.889Bos_taurus
ENSXCOG00000016788rab5c9874.766WBGene00004268rab-59973.611Caenorhabditis_elegans
ENSXCOG00000016788rab5c9891.204ENSCAFG00000015629RAB5C9989.352Canis_familiaris
ENSXCOG00000016788rab5c9891.204ENSCAFG00020013537RAB5C9989.352Canis_lupus_dingo
ENSXCOG00000016788rab5c9891.204ENSCHIG00000012960RAB5C9988.889Capra_hircus
ENSXCOG00000016788rab5c9891.667ENSTSYG00000030531RAB5C9989.352Carlito_syrichta
ENSXCOG00000016788rab5c9891.204ENSCCAG00000025940RAB5C9988.889Cebus_capucinus
ENSXCOG00000016788rab5c9891.204ENSCATG00000040873RAB5C9989.352Cercocebus_atys
ENSXCOG00000016788rab5c9891.204ENSCLAG00000016650RAB5C9988.889Chinchilla_lanigera
ENSXCOG00000016788rab5c8195.506ENSCHOG00000009886RAB5C10095.506Choloepus_hoffmanni
ENSXCOG00000016788rab5c10074.545ENSCING00000003340-10074.091Ciona_intestinalis
ENSXCOG00000016788rab5c9877.064ENSCSAVG00000000613-9983.851Ciona_savignyi
ENSXCOG00000016788rab5c9891.204ENSCGRG00001014226Rab5c9988.889Cricetulus_griseus_chok1gshd
ENSXCOG00000016788rab5c9891.204ENSCGRG00000007534Rab5c9988.889Cricetulus_griseus_crigri
ENSXCOG00000016788rab5c10094.545ENSCSEG00000017024rab5c10094.545Cynoglossus_semilaevis
ENSXCOG00000016788rab5c10097.273ENSCVAG00000009550rab5c10097.273Cyprinodon_variegatus
ENSXCOG00000016788rab5c9891.204ENSDNOG00000038853RAB5C9988.426Dasypus_novemcinctus
ENSXCOG00000016788rab5c9891.204ENSDORG00000006819Rab5c9988.889Dipodomys_ordii
ENSXCOG00000016788rab5c9773.077FBgn0014010Rab58480.000Drosophila_melanogaster
ENSXCOG00000016788rab5c9977.419ENSEBUG00000014794rab5c8886.559Eptatretus_burgeri
ENSXCOG00000016788rab5c9891.204ENSEASG00005009281RAB5C9989.352Equus_asinus_asinus
ENSXCOG00000016788rab5c9891.667ENSECAG00000025054RAB5C9989.352Equus_caballus
ENSXCOG00000016788rab5c9891.204ENSEEUG00000002790RAB5C9988.889Erinaceus_europaeus
ENSXCOG00000016788rab5c10090.455ENSELUG00000010439-10090.455Esox_lucius
ENSXCOG00000016788rab5c9894.444ENSELUG00000018516rab5c9994.444Esox_lucius
ENSXCOG00000016788rab5c9891.204ENSFCAG00000002148RAB5C9988.889Felis_catus
ENSXCOG00000016788rab5c9890.741ENSFDAG00000021541RAB5C9988.426Fukomys_damarensis
ENSXCOG00000016788rab5c10098.636ENSFHEG00000012117rab5c10098.636Fundulus_heteroclitus
ENSXCOG00000016788rab5c9990.868ENSFHEG00000015268-9990.868Fundulus_heteroclitus
ENSXCOG00000016788rab5c10095.000ENSGMOG00000015096rab5c10095.000Gadus_morhua
ENSXCOG00000016788rab5c8086.127ENSGMOG00000001876-10086.127Gadus_morhua
ENSXCOG00000016788rab5c10099.545ENSGAFG00000000884rab5c10099.545Gambusia_affinis
ENSXCOG00000016788rab5c9591.388ENSGAFG00000003642-9989.189Gambusia_affinis
ENSXCOG00000016788rab5c10092.727ENSGACG00000008659rab5c10092.727Gasterosteus_aculeatus
ENSXCOG00000016788rab5c9891.204ENSGGOG00000005472RAB5C9989.352Gorilla_gorilla
ENSXCOG00000016788rab5c10095.455ENSHBUG00000002014rab5c10095.455Haplochromis_burtoni
ENSXCOG00000016788rab5c9990.094ENSHBUG00000006823-10088.739Haplochromis_burtoni
ENSXCOG00000016788rab5c9890.278ENSHGLG00000012067RAB5C9987.500Heterocephalus_glaber_female
ENSXCOG00000016788rab5c9996.804ENSHCOG00000004662rab5c9896.804Hippocampus_comes
ENSXCOG00000016788rab5c9882.464ENSHCOG00000020238-10080.702Hippocampus_comes
ENSXCOG00000016788rab5c9793.780ENSIPUG00000020082rab5c10094.144Ictalurus_punctatus
ENSXCOG00000016788rab5c9890.741ENSSTOG00000006620RAB5C9988.889Ictidomys_tridecemlineatus
ENSXCOG00000016788rab5c9891.667ENSJJAG00000021181Rab5c9988.889Jaculus_jaculus
ENSXCOG00000016788rab5c9990.868ENSKMAG00000017417-9990.868Kryptolebias_marmoratus
ENSXCOG00000016788rab5c10097.727ENSKMAG00000020038rab5c10097.727Kryptolebias_marmoratus
ENSXCOG00000016788rab5c10097.273ENSLBEG00000004128rab5c10097.273Labrus_bergylta
ENSXCOG00000016788rab5c10090.498ENSLBEG00000010408-10090.498Labrus_bergylta
ENSXCOG00000016788rab5c9892.593ENSLOCG00000012566rab5c10090.741Lepisosteus_oculatus
ENSXCOG00000016788rab5c9891.204ENSMFAG00000039627RAB5C9989.352Macaca_fascicularis
ENSXCOG00000016788rab5c9891.204ENSMNEG00000000355RAB5C9989.352Macaca_nemestrina
ENSXCOG00000016788rab5c10096.818ENSMAMG00000022322rab5c10096.818Mastacembelus_armatus
ENSXCOG00000016788rab5c9991.324ENSMAMG00000016207-9991.324Mastacembelus_armatus
ENSXCOG00000016788rab5c10095.455ENSMZEG00005022735rab5c10095.455Maylandia_zebra
ENSXCOG00000016788rab5c9990.094ENSMZEG00005021090-10088.739Maylandia_zebra
ENSXCOG00000016788rab5c9891.667ENSMAUG00000015005Rab5c9989.352Mesocricetus_auratus
ENSXCOG00000016788rab5c9891.204ENSMICG00000041608RAB5C9988.889Microcebus_murinus
ENSXCOG00000016788rab5c9891.667ENSMOCG00000018531-9988.889Microtus_ochrogaster
ENSXCOG00000016788rab5c10096.364ENSMMOG00000020621rab5c10096.364Mola_mola
ENSXCOG00000016788rab5c9990.141ENSMALG00000006052rab5c9988.991Monopterus_albus
ENSXCOG00000016788rab5c9990.094ENSMALG00000022348-9989.498Monopterus_albus
ENSXCOG00000016788rab5c9891.667MGP_CAROLIEiJ_G0017184Rab5c9989.352Mus_caroli
ENSXCOG00000016788rab5c9891.667ENSMUSG00000019173Rab5c9989.352Mus_musculus
ENSXCOG00000016788rab5c9891.667MGP_PahariEiJ_G0018314Rab5c9989.352Mus_pahari
ENSXCOG00000016788rab5c9891.667MGP_SPRETEiJ_G0018027Rab5c9989.352Mus_spretus
ENSXCOG00000016788rab5c9891.204ENSMPUG00000010554RAB5C9989.352Mustela_putorius_furo
ENSXCOG00000016788rab5c9891.204ENSNGAG00000010286Rab5c9988.889Nannospalax_galili
ENSXCOG00000016788rab5c10096.364ENSNBRG00000018165rab5c10096.364Neolamprologus_brichardi
ENSXCOG00000016788rab5c9990.094ENSNBRG00000016922-10088.739Neolamprologus_brichardi
ENSXCOG00000016788rab5c8188.764ENSOPRG00000008255RAB5C10088.764Ochotona_princeps
ENSXCOG00000016788rab5c9890.741ENSODEG00000017920RAB5C9988.426Octodon_degus
ENSXCOG00000016788rab5c10096.364ENSONIG00000001113rab5c10096.364Oreochromis_niloticus
ENSXCOG00000016788rab5c9996.774ENSORLG00000003882rab5c9996.774Oryzias_latipes
ENSXCOG00000016788rab5c9996.774ENSORLG00020008388rab5c9996.774Oryzias_latipes_hni
ENSXCOG00000016788rab5c9996.774ENSORLG00015021900rab5c9996.774Oryzias_latipes_hsok
ENSXCOG00000016788rab5c9996.774ENSOMEG00000023078rab5c9996.774Oryzias_melastigma
ENSXCOG00000016788rab5c9891.667ENSOGAG00000009456RAB5C9989.352Otolemur_garnettii
ENSXCOG00000016788rab5c9891.204ENSOARG00000018768RAB5C9988.889Ovis_aries
ENSXCOG00000016788rab5c9891.204ENSPPAG00000037206RAB5C9989.352Pan_paniscus
ENSXCOG00000016788rab5c9891.204ENSPPRG00000005745RAB5C9988.889Panthera_pardus
ENSXCOG00000016788rab5c9891.204ENSPTIG00000008177RAB5C9988.889Panthera_tigris_altaica
ENSXCOG00000016788rab5c9891.204ENSPTRG00000009194RAB5C9989.352Pan_troglodytes
ENSXCOG00000016788rab5c9888.426ENSPKIG00000001237-9986.111Paramormyrops_kingsleyae
ENSXCOG00000016788rab5c9887.963ENSPKIG00000020112-9987.963Paramormyrops_kingsleyae
ENSXCOG00000016788rab5c9995.283ENSPMGG00000010792rab5c10094.931Periophthalmus_magnuspinnatus
ENSXCOG00000016788rab5c9891.667ENSPEMG00000017971Rab5c9988.889Peromyscus_maniculatus_bairdii
ENSXCOG00000016788rab5c9977.830ENSPMAG00000001399rab5c9976.389Petromyzon_marinus
ENSXCOG00000016788rab5c9879.070ENSPMAG00000000008rab5c8886.458Petromyzon_marinus
ENSXCOG00000016788rab5c8881.443ENSPMAG00000007867rab5c8884.324Petromyzon_marinus
ENSXCOG00000016788rab5c9891.204ENSPCIG00000020225-9989.352Phascolarctos_cinereus
ENSXCOG00000016788rab5c9990.411ENSPLAG00000016333-10090.411Poecilia_latipinna
ENSXCOG00000016788rab5c10099.545ENSPLAG00000004790rab5c10099.545Poecilia_latipinna
ENSXCOG00000016788rab5c9691.549ENSPMEG00000012614-10090.135Poecilia_mexicana
ENSXCOG00000016788rab5c10099.545ENSPMEG00000011336rab5c10099.545Poecilia_mexicana
ENSXCOG00000016788rab5c10099.545ENSPREG00000010146rab5c10099.545Poecilia_reticulata
ENSXCOG00000016788rab5c8591.534ENSPREG00000022167-8992.896Poecilia_reticulata
ENSXCOG00000016788rab5c9891.204ENSPPYG00000008398RAB5C9989.352Pongo_abelii
ENSXCOG00000016788rab5c9890.278ENSPCAG00000016412RAB5C9987.963Procavia_capensis
ENSXCOG00000016788rab5c9890.741ENSPCOG00000026327RAB5C9988.426Propithecus_coquereli
ENSXCOG00000016788rab5c9891.667ENSPVAG00000003867RAB5C9989.352Pteropus_vampyrus
ENSXCOG00000016788rab5c10095.455ENSPNYG00000010615rab5c10095.455Pundamilia_nyererei
ENSXCOG00000016788rab5c9990.094ENSPNYG00000015851-10088.739Pundamilia_nyererei
ENSXCOG00000016788rab5c10096.380ENSPNAG00000028138rab5c10096.380Pygocentrus_nattereri
ENSXCOG00000016788rab5c9988.679ENSPNAG00000002218-9989.048Pygocentrus_nattereri
ENSXCOG00000016788rab5c9891.667ENSRNOG00000018568Rab5c9989.352Rattus_norvegicus
ENSXCOG00000016788rab5c9891.204ENSRBIG00000031376RAB5C9989.352Rhinopithecus_bieti
ENSXCOG00000016788rab5c9891.204ENSRROG00000032895RAB5C9989.352Rhinopithecus_roxellana
ENSXCOG00000016788rab5c9891.204ENSSBOG00000032552-9988.889Saimiri_boliviensis_boliviensis
ENSXCOG00000016788rab5c9891.667ENSSHAG00000005267-9989.815Sarcophilus_harrisii
ENSXCOG00000016788rab5c10087.727ENSSFOG00015009988-10087.727Scleropages_formosus
ENSXCOG00000016788rab5c9996.244ENSSMAG00000007323rab5c10095.909Scophthalmus_maximus
ENSXCOG00000016788rab5c10097.727ENSSDUG00000023008rab5c10097.727Seriola_dumerili
ENSXCOG00000016788rab5c10096.818ENSSLDG00000017771rab5c10096.818Seriola_lalandi_dorsalis
ENSXCOG00000016788rab5c9892.130ENSSPUG00000012950-9989.815Sphenodon_punctatus
ENSXCOG00000016788rab5c10097.727ENSSPAG00000006436rab5c10097.727Stegastes_partitus
ENSXCOG00000016788rab5c9891.204ENSSSCG00000032467RAB5C9988.889Sus_scrofa
ENSXCOG00000016788rab5c10095.000ENSTRUG00000015590rab5c10095.000Takifugu_rubripes
ENSXCOG00000016788rab5c9996.226ENSTNIG00000011711rab5c9795.833Tetraodon_nigroviridis
ENSXCOG00000016788rab5c9891.204ENSTBEG00000007092RAB5C9989.352Tupaia_belangeri
ENSXCOG00000016788rab5c9890.741ENSTTRG00000006673RAB5C9988.426Tursiops_truncatus
ENSXCOG00000016788rab5c9891.204ENSUAMG00000024343RAB5C9989.352Ursus_americanus
ENSXCOG00000016788rab5c9891.204ENSUMAG00000023270RAB5C9989.352Ursus_maritimus
ENSXCOG00000016788rab5c10099.545ENSXMAG00000003266rab5c10099.545Xiphophorus_maculatus
ENSXCOG00000016788rab5c9989.954ENSXMAG00000022179-10089.954Xiphophorus_maculatus

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