EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXCOG00000016972 (Gene tree)
Gene ID: -
Gene Symbol: tdrkh
Alias: TDRD2|zgc:113056
Full Name: tudor and KH domain containing
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Minus strand
Length: 12066 bases
Position: chrKQ557202.1:237008-249073
Accession: ZDB-GENE-050327-81
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000022725	KH_1	PF00013.29	1.8e-16	1	1
ENSXCOP00000022727	KH_1	PF00013.29	2e-16	1	1
ENSXCOP00000022720	KH_1	PF00013.29	1e-12	1	1
ENSXCOP00000022727	TUDOR	PF00567.24	1.8e-17	1	1
ENSXCOP00000022720	TUDOR	PF00567.24	3.5e-17	1	1
ENSXCOP00000022725	TUDOR	PF00567.24	1.5e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000022996	-	1242	-	ENSXCOP00000022720	413 (aa)	-	-
ENSXCOT00000023003	-	1386	-	ENSXCOP00000022727	461 (aa)	-	-
ENSXCOT00000023001	-	1332	-	ENSXCOP00000022725	443 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000016972's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000016972's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000016972	tdrkh	100	80.822	ENSAPOG00000012653	tdrkh	87	80.357	Acanthochromis_polyacanthus
ENSXCOG00000016972	tdrkh	99	82.456	ENSACIG00000010318	tdrkh	83	82.456	Amphilophus_citrinellus
ENSXCOG00000016972	tdrkh	98	87.037	ENSAOCG00000020623	tdrkh	88	83.562	Amphiprion_ocellaris
ENSXCOG00000016972	tdrkh	98	87.037	ENSAPEG00000018388	tdrkh	88	83.562	Amphiprion_percula
ENSXCOG00000016972	tdrkh	98	85.185	ENSATEG00000023809	tdrkh	81	85.185	Anabas_testudineus
ENSXCOG00000016972	tdrkh	98	78.182	ENSACLG00000003017	tdrkh	88	79.452	Astatotilapia_calliptera
ENSXCOG00000016972	tdrkh	99	75.630	ENSAMXG00000011664	tdrkh	75	75.630	Astyanax_mexicanus
ENSXCOG00000016972	tdrkh	98	72.222	ENSCSEG00000002894	tdrkh	88	69.863	Cynoglossus_semilaevis
ENSXCOG00000016972	tdrkh	96	41.497	ENSCVAG00000020347	tdrkh	97	44.575	Cyprinodon_variegatus
ENSXCOG00000016972	tdrkh	99	76.471	ENSDARG00000053474	tdrkh	78	76.471	Danio_rerio
ENSXCOG00000016972	tdrkh	98	72.222	ENSELUG00000024537	tdrkh	87	68.493	Esox_lucius
ENSXCOG00000016972	tdrkh	98	85.455	ENSFHEG00000003544	tdrkh	89	82.278	Fundulus_heteroclitus
ENSXCOG00000016972	tdrkh	98	76.364	ENSGMOG00000009304	tdrkh	87	72.603	Gadus_morhua
ENSXCOG00000016972	tdrkh	98	98.182	ENSGAFG00000010754	tdrkh	81	98.182	Gambusia_affinis
ENSXCOG00000016972	tdrkh	99	73.973	ENSGACG00000015258	tdrkh	87	73.973	Gasterosteus_aculeatus
ENSXCOG00000016972	tdrkh	98	80.000	ENSHBUG00000017609	tdrkh	81	80.000	Haplochromis_burtoni
ENSXCOG00000016972	tdrkh	92	76.471	ENSIPUG00000009673	tdrkh	73	76.471	Ictalurus_punctatus
ENSXCOG00000016972	tdrkh	98	87.037	ENSKMAG00000016638	tdrkh	76	85.455	Kryptolebias_marmoratus
ENSXCOG00000016972	tdrkh	98	85.185	ENSLBEG00000027323	tdrkh	87	79.747	Labrus_bergylta
ENSXCOG00000016972	tdrkh	90	70.339	ENSLOCG00000011381	tdrkh	71	70.339	Lepisosteus_oculatus
ENSXCOG00000016972	tdrkh	98	80.000	ENSMAMG00000020343	tdrkh	81	80.000	Mastacembelus_armatus
ENSXCOG00000016972	tdrkh	98	78.182	ENSMZEG00005006755	tdrkh	88	79.452	Maylandia_zebra
ENSXCOG00000016972	tdrkh	99	85.965	ENSMMOG00000020663	tdrkh	84	78.689	Mola_mola
ENSXCOG00000016972	tdrkh	98	78.182	ENSMALG00000015401	tdrkh	81	78.182	Monopterus_albus
ENSXCOG00000016972	tdrkh	92	79.487	ENSNBRG00000023815	tdrkh	72	79.487	Neolamprologus_brichardi
ENSXCOG00000016972	tdrkh	98	72.727	ENSORLG00000029204	tdrkh	87	68.354	Oryzias_latipes
ENSXCOG00000016972	tdrkh	97	62.000	ENSORLG00020016168	tdrkh	83	62.000	Oryzias_latipes_hni
ENSXCOG00000016972	tdrkh	99	73.684	ENSORLG00015014094	tdrkh	81	73.684	Oryzias_latipes_hsok
ENSXCOG00000016972	tdrkh	98	80.000	ENSOMEG00000015063	tdrkh	75	80.000	Oryzias_melastigma
ENSXCOG00000016972	tdrkh	99	65.455	ENSPKIG00000017597	tdrkh	81	64.815	Paramormyrops_kingsleyae
ENSXCOG00000016972	tdrkh	91	76.471	ENSPMGG00000019362	tdrkh	86	66.190	Periophthalmus_magnuspinnatus
ENSXCOG00000016972	tdrkh	98	100.000	ENSPFOG00000013032	tdrkh	89	92.405	Poecilia_formosa
ENSXCOG00000016972	tdrkh	98	100.000	ENSPLAG00000004193	tdrkh	81	100.000	Poecilia_latipinna
ENSXCOG00000016972	tdrkh	98	100.000	ENSPMEG00000016502	tdrkh	81	100.000	Poecilia_mexicana
ENSXCOG00000016972	tdrkh	100	98.387	ENSPREG00000004213	tdrkh	100	93.506	Poecilia_reticulata
ENSXCOG00000016972	tdrkh	99	79.310	ENSPNYG00000022818	tdrkh	82	79.310	Pundamilia_nyererei
ENSXCOG00000016972	tdrkh	99	75.630	ENSPNAG00000008783	tdrkh	75	75.630	Pygocentrus_nattereri
ENSXCOG00000016972	tdrkh	90	68.908	ENSSFOG00015001048	tdrkh	85	56.579	Scleropages_formosus
ENSXCOG00000016972	tdrkh	98	83.333	ENSSMAG00000001532	tdrkh	88	78.082	Scophthalmus_maximus
ENSXCOG00000016972	tdrkh	98	87.037	ENSSDUG00000013393	tdrkh	86	82.192	Seriola_dumerili
ENSXCOG00000016972	tdrkh	98	88.889	ENSSLDG00000017418	tdrkh	81	88.889	Seriola_lalandi_dorsalis
ENSXCOG00000016972	tdrkh	98	87.273	ENSSPAG00000006435	tdrkh	88	84.932	Stegastes_partitus
ENSXCOG00000016972	tdrkh	98	63.409	ENSTRUG00000006644	tdrkh	86	63.409	Takifugu_rubripes
ENSXCOG00000016972	tdrkh	98	75.926	ENSTNIG00000003157	tdrkh	81	75.926	Tetraodon_nigroviridis
ENSXCOG00000016972	tdrkh	95	98.966	ENSXMAG00000014756	tdrkh	88	96.117	Xiphophorus_maculatus