EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSXCOG00000017066 (Gene tree)
Gene ID
-
Gene Symbol
pabpc1a
Alias
-
Full Name
poly(A) binding protein%2C cytoplasmic 1a
Gene Type
protein_coding
Species
Xiphophorus_couchianus
Status
putative
Strand
Minus strand
Length
5208 bases
Position
chrKQ557218.1:26765694-26770901
Accession
ZDB-GENE-030131-3238
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSXCOP00000022839PABPPF00658.184.8e-3211
ENSXCOP00000022839RRM_5PF13893.63.4e-0811
ENSXCOP00000022839RRM_1PF00076.225.2e-9314
ENSXCOP00000022839RRM_1PF00076.225.2e-9324
ENSXCOP00000022839RRM_1PF00076.225.2e-9334
ENSXCOP00000022839RRM_1PF00076.225.2e-9344
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSXCOT00000023115-1803-ENSXCOP00000022839600 (aa)--
Gene Model
Click here to download ENSXCOG00000017066's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000017066's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSXCOG00000017066pabpc1a6137.333ENSXCOG00000016995rbm197137.333
ENSXCOG00000017066pabpc1a6030.328ENSXCOG00000017733tia1l9330.328
ENSXCOG00000017066pabpc1a9869.805ENSXCOG00000005459pabpc1l9984.397
ENSXCOG00000017066pabpc1a6331.788ENSXCOG00000002464ELAVL29131.788
ENSXCOG00000017066pabpc1a6336.986ENSXCOG00000019737celf3a5936.986
ENSXCOG00000017066pabpc1a6232.143ENSXCOG00000008899-9132.143
ENSXCOG00000017066pabpc1a5132.593ENSXCOG00000003524ncl8232.593
ENSXCOG00000017066pabpc1a6332.632ENSXCOG00000006995rbms2b5732.632
ENSXCOG00000017066pabpc1a9875.551ENSXCOG00000013190pabpc49682.075
ENSXCOG00000017066pabpc1a10086.371ENSXCOG00000019901pabpc1b10085.855
ENSXCOG00000017066pabpc1a6032.584ENSXCOG00000008068-9232.584
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSXCOG00000017066pabpc1a6180.102ENSG00000186288PABPC1L2A9880.102Homo_sapiens
ENSXCOG00000017066pabpc1a6180.102ENSG00000184388PABPC1L2B9880.102Homo_sapiens
ENSXCOG00000017066pabpc1a10092.126ENSAPOG00000015105pabpc1a10092.126Acanthochromis_polyacanthus
ENSXCOG00000017066pabpc1a10089.886ENSAPOG00000017776pabpc1b10089.723Acanthochromis_polyacanthus
ENSXCOG00000017066pabpc1a6180.102ENSAMEG00000019441-9880.102Ailuropoda_melanoleuca
ENSXCOG00000017066pabpc1a10091.811ENSACIG00000004685pabpc1a10091.811Amphilophus_citrinellus
ENSXCOG00000017066pabpc1a10087.640ENSACIG00000018366pabpc1b10087.480Amphilophus_citrinellus
ENSXCOG00000017066pabpc1a10086.909ENSAOCG00000019839pabpc1b10086.751Amphiprion_ocellaris
ENSXCOG00000017066pabpc1a10092.126ENSAOCG00000011656pabpc1a10092.126Amphiprion_ocellaris
ENSXCOG00000017066pabpc1a10086.909ENSAPEG00000010435pabpc1b10086.751Amphiprion_percula
ENSXCOG00000017066pabpc1a10092.126ENSAPEG00000006963pabpc1a10092.126Amphiprion_percula
ENSXCOG00000017066pabpc1a10085.669ENSATEG00000012917pabpc1b10085.669Anabas_testudineus
ENSXCOG00000017066pabpc1a10091.811ENSATEG00000024852pabpc1a10091.811Anabas_testudineus
ENSXCOG00000017066pabpc1a6180.102ENSANAG00000019431-9880.102Aotus_nancymaae
ENSXCOG00000017066pabpc1a6180.102ENSANAG00000019429-9880.102Aotus_nancymaae
ENSXCOG00000017066pabpc1a10085.804ENSACLG00000014335pabpc1b10085.962Astatotilapia_calliptera
ENSXCOG00000017066pabpc1a10091.811ENSACLG00000009399pabpc1a10091.811Astatotilapia_calliptera
ENSXCOG00000017066pabpc1a10086.909ENSAMXG00000008599pabpc1b10086.751Astyanax_mexicanus
ENSXCOG00000017066pabpc1a6379.024ENSBTAG00000050902-9879.024Bos_taurus
ENSXCOG00000017066pabpc1a6377.033ENSBTAG00000052491-9877.033Bos_taurus
ENSXCOG00000017066pabpc1a6180.102ENSCJAG00000041326-9880.102Callithrix_jacchus
ENSXCOG00000017066pabpc1a6379.024ENSCAFG00020002052-9879.024Canis_lupus_dingo
ENSXCOG00000017066pabpc1a6180.102ENSCHIG00000011138-9880.102Capra_hircus
ENSXCOG00000017066pabpc1a6180.102ENSCHIG00000006283-9880.102Capra_hircus
ENSXCOG00000017066pabpc1a6180.102ENSTSYG00000001775-9880.102Carlito_syrichta
ENSXCOG00000017066pabpc1a6180.102ENSCPOG00000009525-9880.102Cavia_porcellus
ENSXCOG00000017066pabpc1a6180.102ENSCCAG00000031524-9880.102Cebus_capucinus
ENSXCOG00000017066pabpc1a6180.102ENSCATG00000042826-9880.102Cercocebus_atys
ENSXCOG00000017066pabpc1a6180.102ENSCATG00000043125-9880.102Cercocebus_atys
ENSXCOG00000017066pabpc1a6178.061ENSCLAG00000017412-9878.061Chinchilla_lanigera
ENSXCOG00000017066pabpc1a6178.061ENSCLAG00000017409-9878.061Chinchilla_lanigera
ENSXCOG00000017066pabpc1a6180.102ENSCSAG00000000102-9880.102Chlorocebus_sabaeus
ENSXCOG00000017066pabpc1a6179.670ENSCGRG00001023387-9677.436Cricetulus_griseus_chok1gshd
ENSXCOG00000017066pabpc1a10085.466ENSCSEG00000015241-10085.466Cynoglossus_semilaevis
ENSXCOG00000017066pabpc1a9991.614ENSCSEG00000013324pabpc1a10091.614Cynoglossus_semilaevis
ENSXCOG00000017066pabpc1a10092.441ENSCVAG00000021872pabpc1a10092.441Cyprinodon_variegatus
ENSXCOG00000017066pabpc1a10084.724ENSCVAG00000005489pabpc1b10083.937Cyprinodon_variegatus
ENSXCOG00000017066pabpc1a10086.751ENSDARG00000017219pabpc1a10087.382Danio_rerio
ENSXCOG00000017066pabpc1a10085.489ENSDARG00000021140pabpc1b9992.199Danio_rerio
ENSXCOG00000017066pabpc1a6180.423ENSDNOG00000030926-9878.571Dasypus_novemcinctus
ENSXCOG00000017066pabpc1a6177.551ENSDORG00000011362-9877.551Dipodomys_ordii
ENSXCOG00000017066pabpc1a6378.641ENSEASG00005010399-9878.641Equus_asinus_asinus
ENSXCOG00000017066pabpc1a6378.641ENSECAG00000002620-9878.641Equus_caballus
ENSXCOG00000017066pabpc1a6376.020ENSEEUG00000008203-9876.020Erinaceus_europaeus
ENSXCOG00000017066pabpc1a10086.164ENSELUG00000015062-10086.006Esox_lucius
ENSXCOG00000017066pabpc1a6358.621ENSELUG00000005389-9758.621Esox_lucius
ENSXCOG00000017066pabpc1a9990.047ENSELUG00000003614pabpc1a10090.047Esox_lucius
ENSXCOG00000017066pabpc1a6180.102ENSFCAG00000039701-9880.102Felis_catus
ENSXCOG00000017066pabpc1a6180.102ENSFDAG00000005484-9880.102Fukomys_damarensis
ENSXCOG00000017066pabpc1a10092.126ENSFHEG00000018979pabpc1a10092.126Fundulus_heteroclitus
ENSXCOG00000017066pabpc1a10086.164ENSFHEG00000008186pabpc1b10086.435Fundulus_heteroclitus
ENSXCOG00000017066pabpc1a10079.160ENSGMOG00000002448-10078.538Gadus_morhua
ENSXCOG00000017066pabpc1a9989.752ENSGMOG00000013448pabpc1a9989.596Gadus_morhua
ENSXCOG00000017066pabpc1a10092.598ENSGAFG00000019750pabpc1a10092.598Gambusia_affinis
ENSXCOG00000017066pabpc1a10086.751ENSGAFG00000010193pabpc1b10086.593Gambusia_affinis
ENSXCOG00000017066pabpc1a10084.375ENSGACG00000003771pabpc1b10084.844Gasterosteus_aculeatus
ENSXCOG00000017066pabpc1a10091.811ENSGACG00000003572pabpc1a10091.811Gasterosteus_aculeatus
ENSXCOG00000017066pabpc1a6180.102ENSGGOG00000043933-9880.102Gorilla_gorilla
ENSXCOG00000017066pabpc1a6180.102ENSGGOG00000038606-9880.102Gorilla_gorilla
ENSXCOG00000017066pabpc1a10087.662ENSHBUG00000002075pabpc1b10087.662Haplochromis_burtoni
ENSXCOG00000017066pabpc1a10091.811ENSHBUG00000020487pabpc1a10091.811Haplochromis_burtoni
ENSXCOG00000017066pabpc1a6179.082ENSHGLG00000019762-9879.082Heterocephalus_glaber_female
ENSXCOG00000017066pabpc1a6179.082ENSHGLG00000019668-9879.082Heterocephalus_glaber_female
ENSXCOG00000017066pabpc1a6179.082ENSHGLG00100020854-9879.082Heterocephalus_glaber_male
ENSXCOG00000017066pabpc1a9870.205ENSHCOG00000003175pabpc1b9970.205Hippocampus_comes
ENSXCOG00000017066pabpc1a10091.811ENSHCOG00000013502pabpc1a10091.811Hippocampus_comes
ENSXCOG00000017066pabpc1a10089.867ENSIPUG00000010791-10089.867Ictalurus_punctatus
ENSXCOG00000017066pabpc1a10085.918ENSIPUG00000008848pabpc1a10085.918Ictalurus_punctatus
ENSXCOG00000017066pabpc1a6358.209ENSIPUG00000018724-6858.209Ictalurus_punctatus
ENSXCOG00000017066pabpc1a7358.087ENSIPUG00000021244-5958.087Ictalurus_punctatus
ENSXCOG00000017066pabpc1a6179.592ENSSTOG00000026028-9879.592Ictidomys_tridecemlineatus
ENSXCOG00000017066pabpc1a6179.592ENSSTOG00000022096-9879.592Ictidomys_tridecemlineatus
ENSXCOG00000017066pabpc1a6178.571ENSJJAG00000007037-9878.571Jaculus_jaculus
ENSXCOG00000017066pabpc1a10089.185ENSKMAG00000008049pabpc1b10089.185Kryptolebias_marmoratus
ENSXCOG00000017066pabpc1a10092.126ENSKMAG00000000605pabpc1a10092.126Kryptolebias_marmoratus
ENSXCOG00000017066pabpc1a10091.969ENSLBEG00000024002-10091.969Labrus_bergylta
ENSXCOG00000017066pabpc1a10086.256ENSLBEG00000026845pabpc1b10085.940Labrus_bergylta
ENSXCOG00000017066pabpc1a6178.974ENSLAFG00000023096-9878.974Loxodonta_africana
ENSXCOG00000017066pabpc1a6179.695ENSMFAG00000028878-9879.695Macaca_fascicularis
ENSXCOG00000017066pabpc1a6180.102ENSMMUG00000037681-9880.102Macaca_mulatta
ENSXCOG00000017066pabpc1a6180.102ENSMMUG00000009740-9880.102Macaca_mulatta
ENSXCOG00000017066pabpc1a6180.102ENSMMUG00000039929-9880.102Macaca_mulatta
ENSXCOG00000017066pabpc1a6180.102ENSMNEG00000037732-9880.102Macaca_nemestrina
ENSXCOG00000017066pabpc1a6180.102ENSMLEG00000027495-9880.102Mandrillus_leucophaeus
ENSXCOG00000017066pabpc1a10087.040ENSMAMG00000014610pabpc1b10087.200Mastacembelus_armatus
ENSXCOG00000017066pabpc1a10091.969ENSMAMG00000004502-10091.969Mastacembelus_armatus
ENSXCOG00000017066pabpc1a10091.811ENSMZEG00005025416pabpc1a10091.811Maylandia_zebra
ENSXCOG00000017066pabpc1a10085.804ENSMZEG00005026745pabpc1b10085.962Maylandia_zebra
ENSXCOG00000017066pabpc1a6180.102ENSMICG00000047642-9880.102Microcebus_murinus
ENSXCOG00000017066pabpc1a10089.037ENSMMOG00000018009pabpc1b10088.870Mola_mola
ENSXCOG00000017066pabpc1a10094.167ENSMMOG00000018044pabpc1a10094.167Mola_mola
ENSXCOG00000017066pabpc1a9964.623ENSMODG00000015024-9964.669Monodelphis_domestica
ENSXCOG00000017066pabpc1a9871.314ENSMODG00000013156-9871.108Monodelphis_domestica
ENSXCOG00000017066pabpc1a10086.567ENSMALG00000006066pabpc1b10085.855Monopterus_albus
ENSXCOG00000017066pabpc1a10096.167ENSMALG00000013020-10096.167Monopterus_albus
ENSXCOG00000017066pabpc1a6181.967ENSNGAG00000012688-9878.571Nannospalax_galili
ENSXCOG00000017066pabpc1a10089.221ENSNBRG00000013737pabpc1b10089.055Neolamprologus_brichardi
ENSXCOG00000017066pabpc1a10091.811ENSNBRG00000003068-10091.811Neolamprologus_brichardi
ENSXCOG00000017066pabpc1a6180.102ENSNLEG00000018128-9880.102Nomascus_leucogenys
ENSXCOG00000017066pabpc1a6179.592ENSODEG00000018540-9879.592Octodon_degus
ENSXCOG00000017066pabpc1a10086.120ENSONIG00000002717pabpc1b10085.804Oreochromis_niloticus
ENSXCOG00000017066pabpc1a10091.654ENSONIG00000006871-10091.654Oreochromis_niloticus
ENSXCOG00000017066pabpc1a6180.102ENSOCUG00000002565-9880.102Oryctolagus_cuniculus
ENSXCOG00000017066pabpc1a10091.339ENSORLG00000002691pabpc1a10091.339Oryzias_latipes
ENSXCOG00000017066pabpc1a10081.646ENSORLG00000003008-10081.013Oryzias_latipes
ENSXCOG00000017066pabpc1a10091.339ENSORLG00020022398pabpc1a10091.339Oryzias_latipes_hni
ENSXCOG00000017066pabpc1a10081.646ENSORLG00020022259-10081.013Oryzias_latipes_hni
ENSXCOG00000017066pabpc1a10081.962ENSORLG00015010932-10081.329Oryzias_latipes_hsok
ENSXCOG00000017066pabpc1a10091.339ENSORLG00015013633pabpc110091.339Oryzias_latipes_hsok
ENSXCOG00000017066pabpc1a10091.496ENSOMEG00000020219pabpc1a10091.496Oryzias_melastigma
ENSXCOG00000017066pabpc1a9974.177ENSOMEG00000013627pabpc1b10073.310Oryzias_melastigma
ENSXCOG00000017066pabpc1a6180.102ENSOGAG00000026047-9880.102Otolemur_garnettii
ENSXCOG00000017066pabpc1a6180.102ENSOGAG00000029513-9880.102Otolemur_garnettii
ENSXCOG00000017066pabpc1a6180.102ENSOARG00000005943-9880.102Ovis_aries
ENSXCOG00000017066pabpc1a6180.102ENSPPAG00000012920-9880.102Pan_paniscus
ENSXCOG00000017066pabpc1a6180.102ENSPPRG00000011809-9880.102Panthera_pardus
ENSXCOG00000017066pabpc1a6180.102ENSPPRG00000011804-9880.102Panthera_pardus
ENSXCOG00000017066pabpc1a6180.102ENSPTRG00000028252-9880.102Pan_troglodytes
ENSXCOG00000017066pabpc1a6180.102ENSPANG00000011549-9880.102Papio_anubis
ENSXCOG00000017066pabpc1a10087.224ENSPKIG00000005676pabpc1b10087.224Paramormyrops_kingsleyae
ENSXCOG00000017066pabpc1a7497.753ENSPMGG00000022487pabpc1a9297.753Periophthalmus_magnuspinnatus
ENSXCOG00000017066pabpc1a7491.723ENSPMGG00000023134-9791.723Periophthalmus_magnuspinnatus
ENSXCOG00000017066pabpc1a9969.936ENSPCIG00000016995-5569.775Phascolarctos_cinereus
ENSXCOG00000017066pabpc1a10086.435ENSPFOG00000005917pabpc1b10086.278Poecilia_formosa
ENSXCOG00000017066pabpc1a10091.190ENSPFOG00000010815pabpc1a10091.190Poecilia_formosa
ENSXCOG00000017066pabpc1a10092.756ENSPLAG00000004114pabpc1a10092.756Poecilia_latipinna
ENSXCOG00000017066pabpc1a10086.751ENSPLAG00000001388pabpc1b10086.593Poecilia_latipinna
ENSXCOG00000017066pabpc1a10092.756ENSPMEG00000001334pabpc1a10092.756Poecilia_mexicana
ENSXCOG00000017066pabpc1a10086.435ENSPMEG00000014399pabpc1b10086.278Poecilia_mexicana
ENSXCOG00000017066pabpc1a10098.023ENSPREG00000019595pabpc1a10098.023Poecilia_reticulata
ENSXCOG00000017066pabpc1a10086.751ENSPREG00000010911pabpc1b10086.593Poecilia_reticulata
ENSXCOG00000017066pabpc1a6180.102ENSPPYG00000020468-9880.102Pongo_abelii
ENSXCOG00000017066pabpc1a6380.102ENSPCAG00000005308-9880.102Procavia_capensis
ENSXCOG00000017066pabpc1a6179.592ENSPCOG00000026349-9879.592Propithecus_coquereli
ENSXCOG00000017066pabpc1a6380.513ENSPVAG00000016117-9880.513Pteropus_vampyrus
ENSXCOG00000017066pabpc1a9995.189ENSPNYG00000005192pabpc1a10095.189Pundamilia_nyererei
ENSXCOG00000017066pabpc1a10087.662ENSPNYG00000012578pabpc1b10087.662Pundamilia_nyererei
ENSXCOG00000017066pabpc1a10087.333ENSPNAG00000028408pabpc1a10087.333Pygocentrus_nattereri
ENSXCOG00000017066pabpc1a10087.066ENSPNAG00000024626pabpc1b10086.909Pygocentrus_nattereri
ENSXCOG00000017066pabpc1a9974.527ENSRBIG00000028738-9972.175Rhinopithecus_bieti
ENSXCOG00000017066pabpc1a6180.102ENSRBIG00000027173-9880.102Rhinopithecus_bieti
ENSXCOG00000017066pabpc1a6180.102ENSRROG00000017404-9880.102Rhinopithecus_roxellana
ENSXCOG00000017066pabpc1a9863.548ENSSHAG00000000511-10063.387Sarcophilus_harrisii
ENSXCOG00000017066pabpc1a10086.888ENSSFOG00015002752-10087.046Scleropages_formosus
ENSXCOG00000017066pabpc1a10085.804ENSSFOG00015006662pabpc1a10085.804Scleropages_formosus
ENSXCOG00000017066pabpc1a7378.613ENSSFOG00015019668-9278.613Scleropages_formosus
ENSXCOG00000017066pabpc1a10085.804ENSSMAG00000006869pabpc1b10085.647Scophthalmus_maximus
ENSXCOG00000017066pabpc1a10091.785ENSSMAG00000010803pabpc1a10091.785Scophthalmus_maximus
ENSXCOG00000017066pabpc1a10086.185ENSSDUG00000011965pabpc1b10085.849Seriola_dumerili
ENSXCOG00000017066pabpc1a10092.126ENSSDUG00000006675pabpc1a10092.126Seriola_dumerili
ENSXCOG00000017066pabpc1a10092.126ENSSLDG00000011661pabpc1a10092.126Seriola_lalandi_dorsalis
ENSXCOG00000017066pabpc1a10086.677ENSSLDG00000014156pabpc1b10086.364Seriola_lalandi_dorsalis
ENSXCOG00000017066pabpc1a10087.046ENSSPAG00000019265pabpc1b10086.730Stegastes_partitus
ENSXCOG00000017066pabpc1a10092.283ENSSPAG00000014453-10092.283Stegastes_partitus
ENSXCOG00000017066pabpc1a6180.102ENSSSCG00000036336-9880.102Sus_scrofa
ENSXCOG00000017066pabpc1a6180.102ENSSSCG00000032167-9880.102Sus_scrofa
ENSXCOG00000017066pabpc1a10082.992ENSTRUG00000003767-10083.780Takifugu_rubripes
ENSXCOG00000017066pabpc1a10090.094ENSTRUG00000011577-10090.566Takifugu_rubripes
ENSXCOG00000017066pabpc1a10087.597ENSTNIG00000013307pabpc1a10088.062Tetraodon_nigroviridis
ENSXCOG00000017066pabpc1a10083.856ENSTNIG00000009153pabpc1b10083.229Tetraodon_nigroviridis
ENSXCOG00000017066pabpc1a6180.102ENSTTRG00000013181-9880.102Tursiops_truncatus
ENSXCOG00000017066pabpc1a6180.102ENSUAMG00000008089-9880.102Ursus_americanus
ENSXCOG00000017066pabpc1a9754.925ENSUMAG00000023926-8969.337Ursus_maritimus
ENSXCOG00000017066pabpc1a6180.102ENSUMAG00000003364-9880.102Ursus_maritimus
ENSXCOG00000017066pabpc1a6279.000ENSVVUG00000015892-9779.000Vulpes_vulpes
ENSXCOG00000017066pabpc1a9747.174ENSXETG00000015439-9747.174Xenopus_tropicalis
ENSXCOG00000017066pabpc1a10098.847ENSXMAG00000002555pabpc1a10098.847Xiphophorus_maculatus
ENSXCOG00000017066pabpc1a10085.804ENSXMAG00000003753pabpc1b9294.823Xiphophorus_maculatus

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