EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000017184 (Gene tree)
Gene ID: -
Gene Symbol: chd1
Alias: fc26h11|fk85d05|si:dkey-106m21.4|wu:fc26h11|wu:fk85d05|zgc:173506
Full Name: chromodomain helicase DNA binding protein 1
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Plus strand
Length: 78268 bases
Position: chrKQ557223.1:2378901-2457168
Accession: ZDB-GENE-030131-7120
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000023025	ResIII	PF04851.15	6.8e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000023302	-	4842	-	ENSXCOP00000023025	1613 (aa)	-	-
ENSXCOT00000023310	-	4677	-	ENSXCOP00000023033	1558 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000017184's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000017184's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000017184	chd1	77	65.217	ENSXCOG00000020255	chd2	91	55.641

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000017184	chd1	91	75.244	ENSG00000153922	CHD1	96	73.394	Homo_sapiens
ENSXCOG00000017184	chd1	68	88.564	ENSAPOG00000005764	chd1	96	88.564	Acanthochromis_polyacanthus
ENSXCOG00000017184	chd1	92	82.963	ENSAOCG00000023105	chd1	98	81.456	Amphiprion_ocellaris
ENSXCOG00000017184	chd1	92	84.149	ENSAPEG00000013544	chd1	98	82.606	Amphiprion_percula
ENSXCOG00000017184	chd1	97	79.950	ENSATEG00000010676	chd1	96	80.629	Anabas_testudineus
ENSXCOG00000017184	chd1	73	81.728	ENSAMXG00000010843	chd1	98	77.778	Astyanax_mexicanus
ENSXCOG00000017184	chd1	97	72.495	ENSCATG00000032035	CHD1	97	72.716	Cercocebus_atys
ENSXCOG00000017184	chd1	97	71.731	ENSCSAG00000015339	CHD1	96	72.755	Chlorocebus_sabaeus
ENSXCOG00000017184	chd1	52	80.190	ENSCPBG00000015831	CHD1	94	71.772	Chrysemys_picta_bellii
ENSXCOG00000017184	chd1	97	70.382	ENSCANG00000036916	CHD1	97	70.610	Colobus_angolensis_palliatus
ENSXCOG00000017184	chd1	97	71.134	ENSCGRG00001023943	Chd1	96	71.541	Cricetulus_griseus_chok1gshd
ENSXCOG00000017184	chd1	97	71.134	ENSCGRG00000008652	Chd1	96	71.541	Cricetulus_griseus_crigri
ENSXCOG00000017184	chd1	91	81.667	ENSCSEG00000009553	chd1	99	79.275	Cynoglossus_semilaevis
ENSXCOG00000017184	chd1	91	71.345	ENSEASG00005016110	CHD1	97	74.265	Equus_asinus_asinus
ENSXCOG00000017184	chd1	90	78.113	ENSELUG00000017677	chd1	93	78.201	Esox_lucius
ENSXCOG00000017184	chd1	75	89.919	ENSFHEG00000021164	chd1	91	89.919	Fundulus_heteroclitus
ENSXCOG00000017184	chd1	97	79.017	ENSGMOG00000001537	chd1	92	78.358	Gadus_morhua
ENSXCOG00000017184	chd1	95	71.222	ENSGALG00000031327	-	95	71.474	Gallus_gallus
ENSXCOG00000017184	chd1	78	95.152	ENSGAFG00000019880	chd1	94	88.953	Gambusia_affinis
ENSXCOG00000017184	chd1	97	69.557	ENSGGOG00000011463	CHD1	97	69.741	Gorilla_gorilla
ENSXCOG00000017184	chd1	91	84.126	ENSHCOG00000014222	chd1	93	84.327	Hippocampus_comes
ENSXCOG00000017184	chd1	91	78.694	ENSIPUG00000001369	chd1	98	76.199	Ictalurus_punctatus
ENSXCOG00000017184	chd1	62	75.470	ENSLAFG00000023183	CHD1	94	76.401	Loxodonta_africana
ENSXCOG00000017184	chd1	97	72.495	ENSMFAG00000031226	CHD1	97	72.716	Macaca_fascicularis
ENSXCOG00000017184	chd1	81	73.525	ENSMMUG00000014090	CHD1	95	74.393	Macaca_mulatta
ENSXCOG00000017184	chd1	97	72.495	ENSMNEG00000045073	CHD1	97	72.716	Macaca_nemestrina
ENSXCOG00000017184	chd1	97	68.488	ENSMLEG00000041096	CHD1	97	68.724	Mandrillus_leucophaeus
ENSXCOG00000017184	chd1	74	86.382	ENSMZEG00005010957	chd1	97	83.152	Maylandia_zebra
ENSXCOG00000017184	chd1	97	70.844	ENSMOCG00000019121	Chd1	96	71.559	Microtus_ochrogaster
ENSXCOG00000017184	chd1	81	82.743	ENSMALG00000013317	chd1	95	82.794	Monopterus_albus
ENSXCOG00000017184	chd1	97	71.455	MGP_CAROLIEiJ_G0021099	Chd1	94	77.953	Mus_caroli
ENSXCOG00000017184	chd1	97	71.455	ENSMUSG00000023852	Chd1	94	77.953	Mus_musculus
ENSXCOG00000017184	chd1	97	71.107	MGP_PahariEiJ_G0023414	Chd1	94	77.876	Mus_pahari
ENSXCOG00000017184	chd1	91	83.970	ENSNBRG00000006860	chd1	98	80.750	Neolamprologus_brichardi
ENSXCOG00000017184	chd1	97	70.361	ENSNLEG00000014493	CHD1	97	70.846	Nomascus_leucogenys
ENSXCOG00000017184	chd1	98	71.300	ENSOANG00000004891	CHD1	100	75.226	Ornithorhynchus_anatinus
ENSXCOG00000017184	chd1	55	87.821	ENSORLG00015016725	chd1	95	83.251	Oryzias_latipes_hsok
ENSXCOG00000017184	chd1	97	71.334	ENSPPAG00000043367	CHD1	98	71.755	Pan_paniscus
ENSXCOG00000017184	chd1	97	72.242	ENSPTRG00000017103	CHD1	97	72.645	Pan_troglodytes
ENSXCOG00000017184	chd1	97	72.495	ENSPANG00000006387	CHD1	97	72.716	Papio_anubis
ENSXCOG00000017184	chd1	94	78.056	ENSPKIG00000024719	chd1	98	78.756	Paramormyrops_kingsleyae
ENSXCOG00000017184	chd1	73	85.029	ENSPMGG00000005785	chd1	100	79.970	Periophthalmus_magnuspinnatus
ENSXCOG00000017184	chd1	97	71.524	ENSPEMG00000015939	Chd1	96	71.739	Peromyscus_maniculatus_bairdii
ENSXCOG00000017184	chd1	100	90.789	ENSPREG00000004209	chd1	99	90.789	Poecilia_reticulata
ENSXCOG00000017184	chd1	81	73.536	ENSRNOG00000014434	Chd1	95	73.506	Rattus_norvegicus
ENSXCOG00000017184	chd1	97	71.734	ENSRBIG00000044325	CHD1	97	71.973	Rhinopithecus_bieti
ENSXCOG00000017184	chd1	97	72.888	ENSRROG00000001726	CHD1	97	72.804	Rhinopithecus_roxellana
ENSXCOG00000017184	chd1	74	79.672	ENSSFOG00015007161	chd1	91	79.575	Scleropages_formosus
ENSXCOG00000017184	chd1	75	86.143	ENSSDUG00000018314	chd1	95	83.173	Seriola_dumerili
ENSXCOG00000017184	chd1	54	91.818	ENSSLDG00000017244	chd1	96	85.404	Seriola_lalandi_dorsalis
ENSXCOG00000017184	chd1	74	87.561	ENSSPAG00000007024	chd1	95	83.518	Stegastes_partitus
ENSXCOG00000017184	chd1	84	74.894	ENSSSCG00000014177	CHD1	98	75.035	Sus_scrofa
ENSXCOG00000017184	chd1	98	77.281	ENSTRUG00000010282	chd1	96	78.607	Takifugu_rubripes
ENSXCOG00000017184	chd1	74	80.278	ENSTNIG00000007101	chd1	95	81.729	Tetraodon_nigroviridis
ENSXCOG00000017184	chd1	83	91.088	ENSXMAG00000014538	chd1	99	91.088	Xiphophorus_maculatus