EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000017217 (Gene tree)
Gene ID: -
Gene Symbol: snrpb
Alias: zgc:77315
Full Name: small nuclear ribonucleoprotein polypeptides B and B1
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Minus strand
Length: 750 bases
Position: chrKQ557213.1:25951218-25951967
Accession: ZDB-GENE-040426-1819
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000023032	LSM	PF01423.22	1.6e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000023309	-	240	-	ENSXCOP00000023032	79 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000017217's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000017217's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000017217	snrpb	85	38.235	ENSXCOG00000000768	naa38	58	38.235
ENSXCOG00000017217	snrpb	78	38.710	ENSXCOG00000012938	lsm8	65	38.710

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000017217	snrpb	89	89.333	ENSG00000125835	SNRPB	51	88.889	Homo_sapiens
ENSXCOG00000017217	snrpb	91	81.818	ENSCAFG00020016234	-	75	81.818	Canis_lupus_dingo
ENSXCOG00000017217	snrpb	54	73.469	ENSCAFG00020013247	-	58	73.469	Canis_lupus_dingo
ENSXCOG00000017217	snrpb	89	82.667	ENSCCAG00000035140	-	68	74.359	Cebus_capucinus
ENSXCOG00000017217	snrpb	71	66.071	ENSFHEG00000006534	-	67	66.071	Fundulus_heteroclitus
ENSXCOG00000017217	snrpb	89	89.333	MGP_CAROLIEiJ_G0024293	Snrpb	51	88.889	Mus_caroli
ENSXCOG00000017217	snrpb	89	89.333	ENSMUSG00000027404	Snrpb	51	88.889	Mus_musculus
ENSXCOG00000017217	snrpb	89	89.333	MGP_PahariEiJ_G0025738	Snrpb	51	88.889	Mus_pahari
ENSXCOG00000017217	snrpb	89	89.333	MGP_SPRETEiJ_G0025213	Snrpb	69	71.429	Mus_spretus
ENSXCOG00000017217	snrpb	52	67.391	ENSPPRG00000018908	-	52	67.391	Panthera_pardus
ENSXCOG00000017217	snrpb	86	87.671	ENSPMAG00000004923	SNRPB	82	87.671	Petromyzon_marinus
ENSXCOG00000017217	snrpb	89	89.333	ENSRNOG00000006961	Snrpb	51	88.889	Rattus_norvegicus