EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXCOG00000017401 (Gene tree)
Gene ID: -
Gene Symbol: lig4
Alias: zgc:165595
Full Name: ligase IV%2C DNA%2C ATP-dependent
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Plus strand
Length: 3119 bases
Position: chrKQ557217.1:3356804-3359922
Accession: ZDB-GENE-070820-10
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000023299	RNA_ligase	PF09414.10	9.6e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000023578	-	2727	-	ENSXCOP00000023299	908 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000017401's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000017401's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000017401	lig4	99	65.165	ENSG00000174405	LIG4	100	65.995	Homo_sapiens
ENSXCOG00000017401	lig4	100	88.487	ENSAPOG00000000866	lig4	100	88.048	Acanthochromis_polyacanthus
ENSXCOG00000017401	lig4	99	63.956	ENSAMEG00000019685	LIG4	98	64.294	Ailuropoda_melanoleuca
ENSXCOG00000017401	lig4	99	89.023	ENSACIG00000018309	lig4	98	89.709	Amphilophus_citrinellus
ENSXCOG00000017401	lig4	100	88.377	ENSAOCG00000011768	lig4	100	87.939	Amphiprion_ocellaris
ENSXCOG00000017401	lig4	100	88.596	ENSAPEG00000017815	lig4	100	88.158	Amphiprion_percula
ENSXCOG00000017401	lig4	100	87.829	ENSATEG00000005583	lig4	100	87.939	Anabas_testudineus
ENSXCOG00000017401	lig4	96	67.275	ENSAPLG00000001673	LIG4	99	67.275	Anas_platyrhynchos
ENSXCOG00000017401	lig4	99	67.550	ENSACAG00000014566	LIG4	99	67.893	Anolis_carolinensis
ENSXCOG00000017401	lig4	99	65.055	ENSANAG00000012446	LIG4	99	65.517	Aotus_nancymaae
ENSXCOG00000017401	lig4	99	87.486	ENSACLG00000027051	lig4	100	87.061	Astatotilapia_calliptera
ENSXCOG00000017401	lig4	100	80.589	ENSAMXG00000008192	lig4	95	80.589	Astyanax_mexicanus
ENSXCOG00000017401	lig4	99	64.396	ENSBTAG00000015868	LIG4	99	64.850	Bos_taurus
ENSXCOG00000017401	lig4	99	64.725	ENSCJAG00000014689	LIG4	99	65.184	Callithrix_jacchus
ENSXCOG00000017401	lig4	99	64.505	ENSCAFG00000006031	LIG4	99	64.961	Canis_familiaris
ENSXCOG00000017401	lig4	99	64.505	ENSCAFG00020021230	LIG4	99	64.961	Canis_lupus_dingo
ENSXCOG00000017401	lig4	99	64.505	ENSCHIG00000001019	LIG4	99	64.961	Capra_hircus
ENSXCOG00000017401	lig4	98	64.009	ENSCAPG00000006284	LIG4	99	64.071	Cavia_aperea
ENSXCOG00000017401	lig4	99	63.516	ENSCPOG00000014266	LIG4	99	63.960	Cavia_porcellus
ENSXCOG00000017401	lig4	99	64.945	ENSCCAG00000019971	LIG4	99	65.406	Cebus_capucinus
ENSXCOG00000017401	lig4	99	65.385	ENSCATG00000021075	LIG4	99	65.517	Cercocebus_atys
ENSXCOG00000017401	lig4	99	64.725	ENSCLAG00000003376	LIG4	99	65.184	Chinchilla_lanigera
ENSXCOG00000017401	lig4	99	65.055	ENSCSAG00000000211	LIG4	99	65.517	Chlorocebus_sabaeus
ENSXCOG00000017401	lig4	98	69.034	ENSCPBG00000023291	LIG4	98	69.196	Chrysemys_picta_bellii
ENSXCOG00000017401	lig4	69	47.327	ENSCING00000009536	-	96	47.152	Ciona_intestinalis
ENSXCOG00000017401	lig4	83	45.000	ENSCSAVG00000010336	-	98	44.914	Ciona_savignyi
ENSXCOG00000017401	lig4	99	64.615	ENSCANG00000005805	LIG4	99	65.072	Colobus_angolensis_palliatus
ENSXCOG00000017401	lig4	98	64.159	ENSCGRG00001012072	Lig4	99	64.111	Cricetulus_griseus_chok1gshd
ENSXCOG00000017401	lig4	98	64.159	ENSCGRG00000013417	Lig4	99	64.111	Cricetulus_griseus_crigri
ENSXCOG00000017401	lig4	97	85.039	ENSCSEG00000013905	lig4	96	85.039	Cynoglossus_semilaevis
ENSXCOG00000017401	lig4	100	91.347	ENSCVAG00000007896	lig4	100	90.800	Cyprinodon_variegatus
ENSXCOG00000017401	lig4	100	79.386	ENSDARG00000060620	lig4	98	80.089	Danio_rerio
ENSXCOG00000017401	lig4	99	64.435	ENSDNOG00000000513	LIG4	99	64.889	Dasypus_novemcinctus
ENSXCOG00000017401	lig4	99	65.165	ENSDORG00000027303	Lig4	99	65.517	Dipodomys_ordii
ENSXCOG00000017401	lig4	89	30.353	FBgn0030506	Lig4	90	30.378	Drosophila_melanogaster
ENSXCOG00000017401	lig4	98	63.193	ENSETEG00000015563	LIG4	99	63.444	Echinops_telfairi
ENSXCOG00000017401	lig4	99	45.026	ENSEBUG00000014243	lig4	98	44.563	Eptatretus_burgeri
ENSXCOG00000017401	lig4	99	64.505	ENSEASG00005022073	LIG4	99	64.961	Equus_asinus_asinus
ENSXCOG00000017401	lig4	99	64.286	ENSECAG00000003257	LIG4	99	64.739	Equus_caballus
ENSXCOG00000017401	lig4	99	81.778	ENSELUG00000006787	lig4	98	82.720	Esox_lucius
ENSXCOG00000017401	lig4	98	64.341	ENSFCAG00000031985	LIG4	99	64.405	Felis_catus
ENSXCOG00000017401	lig4	88	69.517	ENSFALG00000004214	LIG4	96	70.202	Ficedula_albicollis
ENSXCOG00000017401	lig4	99	63.407	ENSFDAG00000008973	LIG4	99	63.849	Fukomys_damarensis
ENSXCOG00000017401	lig4	100	91.776	ENSFHEG00000007398	lig4	91	91.228	Fundulus_heteroclitus
ENSXCOG00000017401	lig4	85	78.036	ENSGMOG00000012843	lig4	98	77.922	Gadus_morhua
ENSXCOG00000017401	lig4	99	65.752	ENSGALG00000016854	LIG4	98	66.295	Gallus_gallus
ENSXCOG00000017401	lig4	99	97.360	ENSGAFG00000019779	lig4	96	97.360	Gambusia_affinis
ENSXCOG00000017401	lig4	100	83.772	ENSGACG00000014135	lig4	98	84.452	Gasterosteus_aculeatus
ENSXCOG00000017401	lig4	99	64.945	ENSGGOG00000027771	LIG4	99	65.406	Gorilla_gorilla
ENSXCOG00000017401	lig4	100	87.171	ENSHBUG00000006245	lig4	100	86.842	Haplochromis_burtoni
ENSXCOG00000017401	lig4	99	64.066	ENSHGLG00000000718	LIG4	99	64.516	Heterocephalus_glaber_female
ENSXCOG00000017401	lig4	99	64.066	ENSHGLG00100003265	LIG4	99	64.516	Heterocephalus_glaber_male
ENSXCOG00000017401	lig4	100	81.490	ENSHCOG00000012010	lig4	100	81.490	Hippocampus_comes
ENSXCOG00000017401	lig4	99	78.184	ENSIPUG00000013748	lig4	98	78.412	Ictalurus_punctatus
ENSXCOG00000017401	lig4	98	65.449	ENSSTOG00000024303	LIG4	99	65.517	Ictidomys_tridecemlineatus
ENSXCOG00000017401	lig4	99	64.176	ENSJJAG00000006750	Lig4	99	64.516	Jaculus_jaculus
ENSXCOG00000017401	lig4	100	86.404	ENSKMAG00000001149	lig4	100	86.404	Kryptolebias_marmoratus
ENSXCOG00000017401	lig4	91	86.578	ENSLBEG00000014578	lig4	100	86.578	Labrus_bergylta
ENSXCOG00000017401	lig4	98	69.077	ENSLACG00000003282	LIG4	98	69.162	Latimeria_chalumnae
ENSXCOG00000017401	lig4	99	72.767	ENSLOCG00000008901	lig4	97	73.051	Lepisosteus_oculatus
ENSXCOG00000017401	lig4	99	64.035	ENSLAFG00000031152	LIG4	99	64.373	Loxodonta_africana
ENSXCOG00000017401	lig4	99	65.165	ENSMFAG00000037235	LIG4	99	65.628	Macaca_fascicularis
ENSXCOG00000017401	lig4	99	64.945	ENSMMUG00000008874	LIG4	99	65.406	Macaca_mulatta
ENSXCOG00000017401	lig4	99	65.165	ENSMNEG00000023575	LIG4	99	65.628	Macaca_nemestrina
ENSXCOG00000017401	lig4	99	65.055	ENSMLEG00000026720	LIG4	99	65.517	Mandrillus_leucophaeus
ENSXCOG00000017401	lig4	100	88.048	ENSMAMG00000008472	lig4	99	87.610	Mastacembelus_armatus
ENSXCOG00000017401	lig4	99	87.486	ENSMZEG00005001855	lig4	100	87.061	Maylandia_zebra
ENSXCOG00000017401	lig4	98	66.333	ENSMGAG00000015532	LIG4	98	66.406	Meleagris_gallopavo
ENSXCOG00000017401	lig4	99	63.077	ENSMOCG00000019000	Lig4	99	63.515	Microtus_ochrogaster
ENSXCOG00000017401	lig4	100	85.855	ENSMMOG00000004390	lig4	100	85.855	Mola_mola
ENSXCOG00000017401	lig4	99	65.532	ENSMODG00000025064	LIG4	99	65.778	Monodelphis_domestica
ENSXCOG00000017401	lig4	100	87.885	ENSMALG00000008555	lig4	100	87.885	Monopterus_albus
ENSXCOG00000017401	lig4	99	63.956	MGP_CAROLIEiJ_G0030809	Lig4	99	64.405	Mus_caroli
ENSXCOG00000017401	lig4	99	63.516	ENSMUSG00000049717	Lig4	99	63.960	Mus_musculus
ENSXCOG00000017401	lig4	99	64.066	MGP_PahariEiJ_G0021270	Lig4	99	64.516	Mus_pahari
ENSXCOG00000017401	lig4	99	63.846	MGP_SPRETEiJ_G0031917	Lig4	99	64.294	Mus_spretus
ENSXCOG00000017401	lig4	99	64.505	ENSMPUG00000018675	LIG4	99	64.627	Mustela_putorius_furo
ENSXCOG00000017401	lig4	99	65.275	ENSMLUG00000001267	LIG4	99	65.740	Myotis_lucifugus
ENSXCOG00000017401	lig4	99	64.725	ENSNGAG00000013258	Lig4	99	64.850	Nannospalax_galili
ENSXCOG00000017401	lig4	99	87.267	ENSNBRG00000021252	lig4	100	87.171	Neolamprologus_brichardi
ENSXCOG00000017401	lig4	99	64.725	ENSNLEG00000007888	LIG4	99	65.184	Nomascus_leucogenys
ENSXCOG00000017401	lig4	99	63.077	ENSOPRG00000005765	LIG4	99	63.404	Ochotona_princeps
ENSXCOG00000017401	lig4	99	63.447	ENSODEG00000019683	LIG4	99	63.889	Octodon_degus
ENSXCOG00000017401	lig4	99	87.377	ENSONIG00000011969	lig4	99	86.952	Oreochromis_niloticus
ENSXCOG00000017401	lig4	99	63.736	ENSOCUG00000015734	LIG4	99	64.071	Oryctolagus_cuniculus
ENSXCOG00000017401	lig4	100	83.388	ENSORLG00000004041	lig4	98	84.281	Oryzias_latipes
ENSXCOG00000017401	lig4	100	83.825	ENSORLG00020019607	lig4	98	84.727	Oryzias_latipes_hni
ENSXCOG00000017401	lig4	100	83.497	ENSORLG00015017754	lig4	98	84.392	Oryzias_latipes_hsok
ENSXCOG00000017401	lig4	76	89.130	ENSOMEG00000003459	lig4	100	89.130	Oryzias_melastigma
ENSXCOG00000017401	lig4	99	64.984	ENSOGAG00000032120	LIG4	98	65.295	Otolemur_garnettii
ENSXCOG00000017401	lig4	82	68.414	ENSOARG00000005590	LIG4	97	69.031	Ovis_aries
ENSXCOG00000017401	lig4	99	64.945	ENSPPAG00000032998	LIG4	99	65.406	Pan_paniscus
ENSXCOG00000017401	lig4	98	64.895	ENSPPRG00000017804	LIG4	99	64.961	Panthera_pardus
ENSXCOG00000017401	lig4	98	64.784	ENSPTIG00000010051	LIG4	99	64.850	Panthera_tigris_altaica
ENSXCOG00000017401	lig4	99	65.055	ENSPTRG00000006025	LIG4	99	65.517	Pan_troglodytes
ENSXCOG00000017401	lig4	99	65.495	ENSPANG00000007562	LIG4	99	65.628	Papio_anubis
ENSXCOG00000017401	lig4	99	78.035	ENSPKIG00000011645	lig4	97	78.635	Paramormyrops_kingsleyae
ENSXCOG00000017401	lig4	98	68.966	ENSPSIG00000001504	LIG4	98	69.016	Pelodiscus_sinensis
ENSXCOG00000017401	lig4	98	81.180	ENSPMGG00000013486	lig4	98	81.180	Periophthalmus_magnuspinnatus
ENSXCOG00000017401	lig4	98	64.049	ENSPEMG00000000076	Lig4	99	64.000	Peromyscus_maniculatus_bairdii
ENSXCOG00000017401	lig4	99	64.874	ENSPCIG00000021882	LIG4	99	65.333	Phascolarctos_cinereus
ENSXCOG00000017401	lig4	100	97.907	ENSPFOG00000000797	lig4	100	97.907	Poecilia_formosa
ENSXCOG00000017401	lig4	100	97.797	ENSPLAG00000001196	lig4	100	97.797	Poecilia_latipinna
ENSXCOG00000017401	lig4	100	98.018	ENSPMEG00000021353	lig4	100	98.018	Poecilia_mexicana
ENSXCOG00000017401	lig4	100	97.137	ENSPREG00000007323	lig4	100	97.137	Poecilia_reticulata
ENSXCOG00000017401	lig4	99	64.615	ENSPPYG00000005540	LIG4	99	65.072	Pongo_abelii
ENSXCOG00000017401	lig4	99	64.176	ENSPVAG00000016403	LIG4	99	64.627	Pteropus_vampyrus
ENSXCOG00000017401	lig4	99	87.486	ENSPNYG00000009660	lig4	100	87.061	Pundamilia_nyererei
ENSXCOG00000017401	lig4	98	81.960	ENSPNAG00000028069	LIG4	99	81.879	Pygocentrus_nattereri
ENSXCOG00000017401	lig4	98	81.960	ENSPNAG00000028056	lig4	99	81.879	Pygocentrus_nattereri
ENSXCOG00000017401	lig4	99	63.626	ENSRNOG00000014605	Lig4	99	63.960	Rattus_norvegicus
ENSXCOG00000017401	lig4	99	63.846	ENSRBIG00000039962	LIG4	99	64.294	Rhinopithecus_bieti
ENSXCOG00000017401	lig4	99	64.725	ENSRROG00000006040	LIG4	99	65.184	Rhinopithecus_roxellana
ENSXCOG00000017401	lig4	99	64.725	ENSSBOG00000019029	LIG4	99	65.184	Saimiri_boliviensis_boliviensis
ENSXCOG00000017401	lig4	99	63.008	ENSSHAG00000009525	LIG4	99	63.778	Sarcophilus_harrisii
ENSXCOG00000017401	lig4	99	78.524	ENSSFOG00015012835	lig4	98	79.195	Scleropages_formosus
ENSXCOG00000017401	lig4	100	83.224	ENSSMAG00000011267	lig4	100	82.675	Scophthalmus_maximus
ENSXCOG00000017401	lig4	100	87.978	ENSSDUG00000010343	lig4	100	87.760	Seriola_dumerili
ENSXCOG00000017401	lig4	100	86.448	ENSSLDG00000003239	lig4	100	86.120	Seriola_lalandi_dorsalis
ENSXCOG00000017401	lig4	99	64.466	ENSSARG00000006573	LIG4	99	64.302	Sorex_araneus
ENSXCOG00000017401	lig4	92	68.929	ENSSPUG00000002444	LIG4	100	68.690	Sphenodon_punctatus
ENSXCOG00000017401	lig4	100	89.035	ENSSPAG00000001609	lig4	100	89.035	Stegastes_partitus
ENSXCOG00000017401	lig4	99	64.246	ENSSSCG00000009540	LIG4	99	64.365	Sus_scrofa
ENSXCOG00000017401	lig4	98	67.111	ENSTGUG00000010795	LIG4	99	67.188	Taeniopygia_guttata
ENSXCOG00000017401	lig4	100	86.732	ENSTRUG00000009984	lig4	100	86.184	Takifugu_rubripes
ENSXCOG00000017401	lig4	100	84.101	ENSTNIG00000010348	lig4	100	83.991	Tetraodon_nigroviridis
ENSXCOG00000017401	lig4	99	64.505	ENSTBEG00000017741	LIG4	99	64.961	Tupaia_belangeri
ENSXCOG00000017401	lig4	99	63.736	ENSTTRG00000012660	LIG4	99	64.182	Tursiops_truncatus
ENSXCOG00000017401	lig4	99	63.956	ENSUAMG00000003773	LIG4	99	64.294	Ursus_americanus
ENSXCOG00000017401	lig4	98	67.929	ENSXETG00000002654	lig4	97	68.481	Xenopus_tropicalis
ENSXCOG00000017401	lig4	100	98.568	ENSXMAG00000015142	lig4	99	98.568	Xiphophorus_maculatus