EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000017438 (Gene tree)
Gene ID: -
Gene Symbol: pspc1
Alias: fj85a06|wu:fj85a06|zgc:136470
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Minus strand
Length: 3438 bases
Position: chrKQ557217.1:3589975-3593412
Accession: ZDB-GENE-030131-9530
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000023350	RRM_1	PF00076.22	3e-31	1	2
ENSXCOP00000023350	RRM_1	PF00076.22	3e-31	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000023630	-	1272	-	ENSXCOP00000023350	423 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000017438's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000017438's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000017438	pspc1	81	61.318	ENSXCOG00000015587	nono	75	61.318

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000017438	pspc1	77	76.994	ENSG00000121390	PSPC1	92	71.429	Homo_sapiens
ENSXCOG00000017438	pspc1	93	81.633	ENSAPOG00000015946	pspc1	96	70.071	Acanthochromis_polyacanthus
ENSXCOG00000017438	pspc1	84	73.239	ENSAMEG00000017420	PSPC1	66	73.521	Ailuropoda_melanoleuca
ENSXCOG00000017438	pspc1	98	73.671	ENSACIG00000018695	pspc1	79	72.573	Amphilophus_citrinellus
ENSXCOG00000017438	pspc1	93	81.888	ENSAOCG00000005279	pspc1	96	71.084	Amphiprion_ocellaris
ENSXCOG00000017438	pspc1	93	81.888	ENSAPEG00000015927	pspc1	96	71.084	Amphiprion_percula
ENSXCOG00000017438	pspc1	93	70.886	ENSATEG00000004878	pspc1	74	68.608	Anabas_testudineus
ENSXCOG00000017438	pspc1	62	78.030	ENSAPLG00000006246	PSPC1	65	78.030	Anas_platyrhynchos
ENSXCOG00000017438	pspc1	73	70.192	ENSAPLG00000003643	SFPQ	55	70.318	Anas_platyrhynchos
ENSXCOG00000017438	pspc1	77	76.380	ENSACAG00000002093	PSPC1	73	67.003	Anolis_carolinensis
ENSXCOG00000017438	pspc1	93	66.750	ENSANAG00000000059	PSPC1	98	66.162	Aotus_nancymaae
ENSXCOG00000017438	pspc1	95	74.938	ENSACLG00000027220	pspc1	82	73.399	Astatotilapia_calliptera
ENSXCOG00000017438	pspc1	92	68.593	ENSAMXG00000036881	pspc1	74	68.342	Astyanax_mexicanus
ENSXCOG00000017438	pspc1	86	71.585	ENSBTAG00000003934	PSPC1	73	68.193	Bos_taurus
ENSXCOG00000017438	pspc1	84	73.239	ENSCJAG00000004554	PSPC1	66	73.239	Callithrix_jacchus
ENSXCOG00000017438	pspc1	77	76.994	ENSCAFG00020002009	PSPC1	98	68.434	Canis_lupus_dingo
ENSXCOG00000017438	pspc1	86	71.585	ENSCHIG00000016708	PSPC1	73	68.193	Capra_hircus
ENSXCOG00000017438	pspc1	62	69.663	ENSTSYG00000032882	PSPC1	59	65.818	Carlito_syrichta
ENSXCOG00000017438	pspc1	77	76.994	ENSCPOG00000000395	PSPC1	98	68.354	Cavia_porcellus
ENSXCOG00000017438	pspc1	84	73.239	ENSCCAG00000033498	PSPC1	66	73.239	Cebus_capucinus
ENSXCOG00000017438	pspc1	77	76.994	ENSCATG00000036434	PSPC1	96	73.184	Cercocebus_atys
ENSXCOG00000017438	pspc1	65	76.449	ENSCLAG00000005241	PSPC1	61	76.449	Chinchilla_lanigera
ENSXCOG00000017438	pspc1	83	73.639	ENSCHOG00000008913	PSPC1	66	73.639	Choloepus_hoffmanni
ENSXCOG00000017438	pspc1	77	76.074	ENSCPBG00000020859	PSPC1	62	76.074	Chrysemys_picta_bellii
ENSXCOG00000017438	pspc1	68	57.986	ENSCSAVG00000003533	-	53	58.993	Ciona_savignyi
ENSXCOG00000017438	pspc1	63	78.947	ENSCANG00000018948	PSPC1	87	78.947	Colobus_angolensis_palliatus
ENSXCOG00000017438	pspc1	85	71.662	ENSCGRG00001018368	Pspc1	69	71.662	Cricetulus_griseus_chok1gshd
ENSXCOG00000017438	pspc1	85	71.662	ENSCGRG00000011724	Pspc1	69	71.662	Cricetulus_griseus_crigri
ENSXCOG00000017438	pspc1	94	87.154	ENSCVAG00000007679	-	77	87.154	Cyprinodon_variegatus
ENSXCOG00000017438	pspc1	93	65.561	ENSDARG00000006621	pspc1	70	72.302	Danio_rerio
ENSXCOG00000017438	pspc1	77	76.994	ENSDNOG00000011078	PSPC1	68	71.274	Dasypus_novemcinctus
ENSXCOG00000017438	pspc1	84	70.423	ENSDORG00000016050	Pspc1	65	70.423	Dipodomys_ordii
ENSXCOG00000017438	pspc1	72	67.097	ENSEBUG00000003964	-	61	61.538	Eptatretus_burgeri
ENSXCOG00000017438	pspc1	78	43.380	ENSEBUG00000010133	pspc1	76	48.630	Eptatretus_burgeri
ENSXCOG00000017438	pspc1	93	68.367	ENSEASG00005000119	PSPC1	92	71.892	Equus_asinus_asinus
ENSXCOG00000017438	pspc1	93	68.367	ENSECAG00000017286	PSPC1	92	71.892	Equus_caballus
ENSXCOG00000017438	pspc1	61	67.308	ENSEEUG00000011288	-	56	62.925	Erinaceus_europaeus
ENSXCOG00000017438	pspc1	92	69.250	ENSELUG00000003746	pspc1	94	69.347	Esox_lucius
ENSXCOG00000017438	pspc1	93	68.274	ENSFCAG00000027841	PSPC1	98	68.434	Felis_catus
ENSXCOG00000017438	pspc1	80	74.336	ENSFALG00000008750	PSPC1	74	67.259	Ficedula_albicollis
ENSXCOG00000017438	pspc1	82	74.493	ENSFDAG00000002617	PSPC1	67	74.493	Fukomys_damarensis
ENSXCOG00000017438	pspc1	84	66.940	ENSGMOG00000015074	pspc1	69	69.468	Gadus_morhua
ENSXCOG00000017438	pspc1	77	76.074	ENSGALG00000017142	PSPC1	62	76.074	Gallus_gallus
ENSXCOG00000017438	pspc1	100	95.035	ENSGAFG00000006327	pspc1	88	95.035	Gambusia_affinis
ENSXCOG00000017438	pspc1	93	72.658	ENSGACG00000014901	pspc1	98	77.841	Gasterosteus_aculeatus
ENSXCOG00000017438	pspc1	77	76.074	ENSGAGG00000019164	PSPC1	62	76.074	Gopherus_agassizii
ENSXCOG00000017438	pspc1	77	76.994	ENSGGOG00000003414	PSPC1	92	71.429	Gorilla_gorilla
ENSXCOG00000017438	pspc1	93	83.163	ENSHBUG00000001139	pspc1	75	83.163	Haplochromis_burtoni
ENSXCOG00000017438	pspc1	85	73.184	ENSHGLG00000018811	PSPC1	67	73.184	Heterocephalus_glaber_female
ENSXCOG00000017438	pspc1	73	73.786	ENSHGLG00100007962	PSPC1	93	74.267	Heterocephalus_glaber_male
ENSXCOG00000017438	pspc1	86	77.686	ENSHCOG00000013251	pspc1	88	71.537	Hippocampus_comes
ENSXCOG00000017438	pspc1	93	69.873	ENSIPUG00000013192	pspc1	74	69.873	Ictalurus_punctatus
ENSXCOG00000017438	pspc1	84	73.521	ENSSTOG00000026833	PSPC1	98	68.528	Ictidomys_tridecemlineatus
ENSXCOG00000017438	pspc1	77	76.994	ENSJJAG00000018334	Pspc1	66	73.639	Jaculus_jaculus
ENSXCOG00000017438	pspc1	84	71.229	ENSKMAG00000013525	-	83	71.549	Kryptolebias_marmoratus
ENSXCOG00000017438	pspc1	91	76.607	ENSLBEG00000004474	pspc1	83	76.607	Labrus_bergylta
ENSXCOG00000017438	pspc1	68	75.524	ENSLACG00000010762	PSPC1	74	65.823	Latimeria_chalumnae
ENSXCOG00000017438	pspc1	93	71.429	ENSLOCG00000010832	pspc1	73	71.429	Lepisosteus_oculatus
ENSXCOG00000017438	pspc1	83	73.639	ENSLAFG00000010968	PSPC1	66	73.639	Loxodonta_africana
ENSXCOG00000017438	pspc1	77	76.994	ENSMFAG00000032728	PSPC1	97	73.184	Macaca_fascicularis
ENSXCOG00000017438	pspc1	78	77.134	ENSMMUG00000020262	PSPC1	94	73.056	Macaca_mulatta
ENSXCOG00000017438	pspc1	77	76.994	ENSMNEG00000027401	PSPC1	74	73.184	Macaca_nemestrina
ENSXCOG00000017438	pspc1	63	78.195	ENSMLEG00000039043	PSPC1	62	78.195	Mandrillus_leucophaeus
ENSXCOG00000017438	pspc1	93	78.117	ENSMAMG00000004333	pspc1	73	78.372	Mastacembelus_armatus
ENSXCOG00000017438	pspc1	95	74.938	ENSMZEG00005005726	pspc1	82	73.399	Maylandia_zebra
ENSXCOG00000017438	pspc1	64	76.667	ENSMGAG00000015134	PSPC1	66	76.667	Meleagris_gallopavo
ENSXCOG00000017438	pspc1	93	63.291	ENSMAUG00000021067	Pspc1	77	65.668	Mesocricetus_auratus
ENSXCOG00000017438	pspc1	83	74.000	ENSMICG00000013970	PSPC1	98	68.010	Microcebus_murinus
ENSXCOG00000017438	pspc1	83	73.926	ENSMOCG00000006060	Pspc1	66	73.926	Microtus_ochrogaster
ENSXCOG00000017438	pspc1	95	53.500	ENSMMOG00000004352	pspc1	67	51.741	Mola_mola
ENSXCOG00000017438	pspc1	83	73.864	ENSMODG00000008029	PSPC1	58	71.274	Monodelphis_domestica
ENSXCOG00000017438	pspc1	93	78.316	ENSMALG00000008914	pspc1	76	78.316	Monopterus_albus
ENSXCOG00000017438	pspc1	83	74.212	MGP_CAROLIEiJ_G0019341	Pspc1	84	65.306	Mus_caroli
ENSXCOG00000017438	pspc1	83	74.212	ENSMUSG00000021938	Pspc1	83	65.306	Mus_musculus
ENSXCOG00000017438	pspc1	83	74.212	MGP_PahariEiJ_G0030359	Pspc1	84	65.306	Mus_pahari
ENSXCOG00000017438	pspc1	83	74.212	MGP_SPRETEiJ_G0020232	Pspc1	84	65.306	Mus_spretus
ENSXCOG00000017438	pspc1	77	76.994	ENSMPUG00000013347	PSPC1	69	71.545	Mustela_putorius_furo
ENSXCOG00000017438	pspc1	77	75.988	ENSMLUG00000017663	PSPC1	66	72.905	Myotis_lucifugus
ENSXCOG00000017438	pspc1	83	73.639	ENSNGAG00000011271	Pspc1	66	73.639	Nannospalax_galili
ENSXCOG00000017438	pspc1	95	75.373	ENSNBRG00000014059	pspc1	94	73.219	Neolamprologus_brichardi
ENSXCOG00000017438	pspc1	77	76.994	ENSNLEG00000001294	PSPC1	66	73.521	Nomascus_leucogenys
ENSXCOG00000017438	pspc1	77	63.804	ENSODEG00000007817	-	67	60.326	Octodon_degus
ENSXCOG00000017438	pspc1	77	69.325	ENSODEG00000019012	-	73	64.810	Octodon_degus
ENSXCOG00000017438	pspc1	93	82.398	ENSONIG00000012010	pspc1	75	82.398	Oreochromis_niloticus
ENSXCOG00000017438	pspc1	76	63.354	ENSOANG00000011381	-	64	63.043	Ornithorhynchus_anatinus
ENSXCOG00000017438	pspc1	62	78.409	ENSOANG00000009017	-	66	78.409	Ornithorhynchus_anatinus
ENSXCOG00000017438	pspc1	77	76.994	ENSOCUG00000006153	PSPC1	66	73.803	Oryctolagus_cuniculus
ENSXCOG00000017438	pspc1	93	78.372	ENSORLG00000004232	-	76	74.300	Oryzias_latipes
ENSXCOG00000017438	pspc1	93	78.626	ENSORLG00020000578	PSPC1	76	74.555	Oryzias_latipes_hni
ENSXCOG00000017438	pspc1	93	78.880	ENSORLG00015017480	pspc1	76	74.809	Oryzias_latipes_hsok
ENSXCOG00000017438	pspc1	50	87.619	ENSOMEG00000003779	pspc1	95	87.440	Oryzias_melastigma
ENSXCOG00000017438	pspc1	84	73.034	ENSOGAG00000012643	PSPC1	65	73.654	Otolemur_garnettii
ENSXCOG00000017438	pspc1	76	76.543	ENSOARG00000014163	PSPC1	66	76.235	Ovis_aries
ENSXCOG00000017438	pspc1	78	77.134	ENSPPAG00000009836	PSPC1	92	77.134	Pan_paniscus
ENSXCOG00000017438	pspc1	77	76.994	ENSPPRG00000008833	PSPC1	69	72.087	Panthera_pardus
ENSXCOG00000017438	pspc1	62	78.409	ENSPTIG00000016917	PSPC1	55	78.409	Panthera_tigris_altaica
ENSXCOG00000017438	pspc1	77	76.994	ENSPTRG00000005677	PSPC1	92	71.429	Pan_troglodytes
ENSXCOG00000017438	pspc1	77	76.994	ENSPANG00000001992	PSPC1	95	73.184	Papio_anubis
ENSXCOG00000017438	pspc1	93	71.247	ENSPKIG00000003578	pspc1	75	71.247	Paramormyrops_kingsleyae
ENSXCOG00000017438	pspc1	77	74.847	ENSPSIG00000005168	PSPC1	64	73.591	Pelodiscus_sinensis
ENSXCOG00000017438	pspc1	84	72.145	ENSPMGG00000015135	pspc1	98	71.910	Periophthalmus_magnuspinnatus
ENSXCOG00000017438	pspc1	83	73.926	ENSPEMG00000015214	Pspc1	66	73.926	Peromyscus_maniculatus_bairdii
ENSXCOG00000017438	pspc1	68	43.537	ENSPMAG00000004618	pspc1	89	43.537	Petromyzon_marinus
ENSXCOG00000017438	pspc1	83	73.864	ENSPCIG00000017680	PSPC1	69	71.274	Phascolarctos_cinereus
ENSXCOG00000017438	pspc1	91	96.410	ENSPFOG00000003362	pspc1	76	96.410	Poecilia_formosa
ENSXCOG00000017438	pspc1	93	96.203	ENSPLAG00000011540	pspc1	76	96.203	Poecilia_latipinna
ENSXCOG00000017438	pspc1	93	96.203	ENSPMEG00000008322	pspc1	76	96.203	Poecilia_mexicana
ENSXCOG00000017438	pspc1	93	95.443	ENSPREG00000007786	pspc1	76	95.443	Poecilia_reticulata
ENSXCOG00000017438	pspc1	77	76.994	ENSPPYG00000005186	PSPC1	76	71.429	Pongo_abelii
ENSXCOG00000017438	pspc1	85	72.145	ENSPCOG00000014364	PSPC1	68	72.145	Propithecus_coquereli
ENSXCOG00000017438	pspc1	77	76.687	ENSPVAG00000005036	PSPC1	66	72.905	Pteropus_vampyrus
ENSXCOG00000017438	pspc1	95	75.434	ENSPNYG00000008893	pspc1	82	73.892	Pundamilia_nyererei
ENSXCOG00000017438	pspc1	93	70.707	ENSPNAG00000016511	pspc1	83	70.707	Pygocentrus_nattereri
ENSXCOG00000017438	pspc1	83	73.926	ENSRNOG00000020782	Pspc1	74	73.926	Rattus_norvegicus
ENSXCOG00000017438	pspc1	85	72.905	ENSRBIG00000036057	PSPC1	97	72.905	Rhinopithecus_bieti
ENSXCOG00000017438	pspc1	83	73.371	ENSRROG00000036334	PSPC1	98	68.250	Rhinopithecus_roxellana
ENSXCOG00000017438	pspc1	63	78.947	ENSSBOG00000028172	PSPC1	87	78.947	Saimiri_boliviensis_boliviensis
ENSXCOG00000017438	pspc1	83	67.797	ENSSHAG00000004696	PSPC1	69	65.499	Sarcophilus_harrisii
ENSXCOG00000017438	pspc1	77	80.368	ENSSFOG00015001395	pspc1	69	80.122	Scleropages_formosus
ENSXCOG00000017438	pspc1	93	77.612	ENSSMAG00000001761	pspc1	91	74.670	Scophthalmus_maximus
ENSXCOG00000017438	pspc1	93	78.680	ENSSDUG00000010651	pspc1	72	80.711	Seriola_dumerili
ENSXCOG00000017438	pspc1	96	72.549	ENSSLDG00000004284	pspc1	82	70.702	Seriola_lalandi_dorsalis
ENSXCOG00000017438	pspc1	77	69.325	ENSSARG00000000888	PSPC1	69	65.479	Sorex_araneus
ENSXCOG00000017438	pspc1	92	57.975	ENSSPUG00000008550	PSPC1	74	58.987	Sphenodon_punctatus
ENSXCOG00000017438	pspc1	93	81.122	ENSSPAG00000001921	pspc1	73	81.122	Stegastes_partitus
ENSXCOG00000017438	pspc1	78	75.988	ENSSSCG00000009569	PSPC1	99	67.595	Sus_scrofa
ENSXCOG00000017438	pspc1	77	76.074	ENSTGUG00000011295	PSPC1	70	76.074	Taeniopygia_guttata
ENSXCOG00000017438	pspc1	93	71.684	ENSTRUG00000011335	pspc1	75	70.918	Takifugu_rubripes
ENSXCOG00000017438	pspc1	93	72.959	ENSTNIG00000010358	pspc1	79	74.406	Tetraodon_nigroviridis
ENSXCOG00000017438	pspc1	77	70.462	ENSTBEG00000002361	PSPC1	72	64.800	Tupaia_belangeri
ENSXCOG00000017438	pspc1	86	71.507	ENSTTRG00000003343	PSPC1	69	71.507	Tursiops_truncatus
ENSXCOG00000017438	pspc1	75	72.956	ENSUAMG00000012309	PSPC1	99	67.697	Ursus_americanus
ENSXCOG00000017438	pspc1	85	72.626	ENSUMAG00000013993	PSPC1	97	72.626	Ursus_maritimus
ENSXCOG00000017438	pspc1	62	78.788	ENSVPAG00000010029	PSPC1	66	78.788	Vicugna_pacos
ENSXCOG00000017438	pspc1	78	76.900	ENSVVUG00000006414	PSPC1	99	68.434	Vulpes_vulpes
ENSXCOG00000017438	pspc1	100	99.054	ENSXMAG00000007929	pspc1	100	99.054	Xiphophorus_maculatus