EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXCOG00000017448 (Gene tree)
Gene ID: -
Gene Symbol: r3hdm1
Alias: WITHDRAWN: wu:fj35h04|fj35h04|fk85b04|id:ibd5043|sb:eu460|si:ch73-60i13.2|wu:fj35h04|wu:fk85b04
Full Name: R3H domain containing 1
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Minus strand
Length: 16889 bases
Position: chrKQ557217.1:3683431-3700319
Accession: ZDB-GENE-030131-7119
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000023365	R3H	PF01424.22	7.6e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000023645	-	2325	-	ENSXCOP00000023365	774 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000017448's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000017448's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000017448	r3hdm1	94	50.582	ENSG00000048991	R3HDM1	89	61.842	Homo_sapiens
ENSXCOG00000017448	r3hdm1	93	74.088	ENSAPOG00000020850	r3hdm1	75	73.333	Acanthochromis_polyacanthus
ENSXCOG00000017448	r3hdm1	94	50.320	ENSAMEG00000014886	R3HDM1	67	50.512	Ailuropoda_melanoleuca
ENSXCOG00000017448	r3hdm1	58	69.432	ENSACIG00000018791	-	90	68.996	Amphilophus_citrinellus
ENSXCOG00000017448	r3hdm1	93	73.618	ENSAOCG00000005192	r3hdm1	76	73.116	Amphiprion_ocellaris
ENSXCOG00000017448	r3hdm1	93	77.279	ENSAPEG00000016108	r3hdm1	77	77.147	Amphiprion_percula
ENSXCOG00000017448	r3hdm1	93	73.572	ENSATEG00000000232	r3hdm1	77	72.776	Anabas_testudineus
ENSXCOG00000017448	r3hdm1	94	50.644	ENSAPLG00000015231	R3HDM1	67	50.193	Anas_platyrhynchos
ENSXCOG00000017448	r3hdm1	94	47.789	ENSACAG00000001676	R3HDM1	68	48.234	Anolis_carolinensis
ENSXCOG00000017448	r3hdm1	94	50.000	ENSANAG00000035334	R3HDM1	71	50.384	Aotus_nancymaae
ENSXCOG00000017448	r3hdm1	93	75.497	ENSACLG00000027282	r3hdm1	78	74.702	Astatotilapia_calliptera
ENSXCOG00000017448	r3hdm1	81	71.746	ENSAMXG00000003536	r3hdm1	60	73.443	Astyanax_mexicanus
ENSXCOG00000017448	r3hdm1	82	72.876	ENSAMXG00000012861	R3HDM1	65	71.895	Astyanax_mexicanus
ENSXCOG00000017448	r3hdm1	94	48.454	ENSBTAG00000013302	R3HDM1	71	47.922	Bos_taurus
ENSXCOG00000017448	r3hdm1	94	50.389	ENSCJAG00000011718	R3HDM1	71	50.513	Callithrix_jacchus
ENSXCOG00000017448	r3hdm1	94	50.319	ENSCAFG00000005075	R3HDM1	67	50.510	Canis_familiaris
ENSXCOG00000017448	r3hdm1	94	50.319	ENSCAFG00020016119	R3HDM1	73	62.740	Canis_lupus_dingo
ENSXCOG00000017448	r3hdm1	94	50.065	ENSCHIG00000020851	R3HDM1	67	50.453	Capra_hircus
ENSXCOG00000017448	r3hdm1	94	46.902	ENSCPOG00000012784	R3HDM1	85	60.382	Cavia_porcellus
ENSXCOG00000017448	r3hdm1	94	50.323	ENSCCAG00000027199	R3HDM1	71	50.064	Cebus_capucinus
ENSXCOG00000017448	r3hdm1	94	61.848	ENSCATG00000023642	R3HDM1	61	62.233	Cercocebus_atys
ENSXCOG00000017448	r3hdm1	94	49.086	ENSCLAG00000007962	R3HDM1	83	62.588	Chinchilla_lanigera
ENSXCOG00000017448	r3hdm1	94	48.157	ENSCSAG00000016356	R3HDM1	68	48.221	Chlorocebus_sabaeus
ENSXCOG00000017448	r3hdm1	75	67.188	ENSCHOG00000013638	R3HDM1	56	67.188	Choloepus_hoffmanni
ENSXCOG00000017448	r3hdm1	90	52.109	ENSCPBG00000009645	R3HDM1	73	51.701	Chrysemys_picta_bellii
ENSXCOG00000017448	r3hdm1	94	49.680	ENSCANG00000034748	R3HDM1	67	50.128	Colobus_angolensis_palliatus
ENSXCOG00000017448	r3hdm1	94	47.853	ENSCGRG00001012357	R3hdm1	66	47.730	Cricetulus_griseus_chok1gshd
ENSXCOG00000017448	r3hdm1	94	49.744	ENSCGRG00000012080	R3hdm1	83	61.190	Cricetulus_griseus_crigri
ENSXCOG00000017448	r3hdm1	91	64.371	ENSCSEG00000008944	r3hdm1	79	59.903	Cynoglossus_semilaevis
ENSXCOG00000017448	r3hdm1	93	80.667	ENSCVAG00000007582	r3hdm1	79	76.553	Cyprinodon_variegatus
ENSXCOG00000017448	r3hdm1	90	49.531	ENSDNOG00000000771	R3HDM1	65	50.199	Dasypus_novemcinctus
ENSXCOG00000017448	r3hdm1	89	47.115	ENSETEG00000013606	R3HDM1	67	46.452	Echinops_telfairi
ENSXCOG00000017448	r3hdm1	53	49.192	ENSEBUG00000014746	arpp21	64	49.652	Eptatretus_burgeri
ENSXCOG00000017448	r3hdm1	94	50.192	ENSEASG00005007392	R3HDM1	71	47.922	Equus_asinus_asinus
ENSXCOG00000017448	r3hdm1	94	49.679	ENSECAG00000019114	R3HDM1	70	47.683	Equus_caballus
ENSXCOG00000017448	r3hdm1	86	53.997	ENSELUG00000014413	r3hdm1	66	54.062	Esox_lucius
ENSXCOG00000017448	r3hdm1	94	49.034	ENSELUG00000004909	R3HDM1	70	50.850	Esox_lucius
ENSXCOG00000017448	r3hdm1	94	49.936	ENSFCAG00000027113	R3HDM1	71	50.769	Felis_catus
ENSXCOG00000017448	r3hdm1	91	48.465	ENSFALG00000013731	R3HDM1	62	47.436	Ficedula_albicollis
ENSXCOG00000017448	r3hdm1	96	47.313	ENSFDAG00000016478	R3HDM1	82	63.702	Fukomys_damarensis
ENSXCOG00000017448	r3hdm1	93	81.575	ENSFHEG00000018713	r3hdm1	83	77.637	Fundulus_heteroclitus
ENSXCOG00000017448	r3hdm1	55	58.723	ENSGMOG00000006042	-	61	53.025	Gadus_morhua
ENSXCOG00000017448	r3hdm1	80	62.541	ENSGALG00000012246	R3HDM1	59	62.541	Gallus_gallus
ENSXCOG00000017448	r3hdm1	92	89.730	ENSGAFG00000006203	r3hdm1	78	89.651	Gambusia_affinis
ENSXCOG00000017448	r3hdm1	93	68.434	ENSGACG00000014925	r3hdm1	76	68.314	Gasterosteus_aculeatus
ENSXCOG00000017448	r3hdm1	82	66.667	ENSGAGG00000007840	R3HDM1	63	66.667	Gopherus_agassizii
ENSXCOG00000017448	r3hdm1	94	50.582	ENSGGOG00000008156	R3HDM1	79	49.936	Gorilla_gorilla
ENSXCOG00000017448	r3hdm1	59	79.787	ENSHBUG00000015737	R3HDM1	83	79.362	Haplochromis_burtoni
ENSXCOG00000017448	r3hdm1	94	48.780	ENSHGLG00000015718	R3HDM1	83	63.420	Heterocephalus_glaber_female
ENSXCOG00000017448	r3hdm1	91	42.466	ENSHGLG00100015374	-	71	41.953	Heterocephalus_glaber_male
ENSXCOG00000017448	r3hdm1	94	49.138	ENSHGLG00100003184	-	83	63.420	Heterocephalus_glaber_male
ENSXCOG00000017448	r3hdm1	91	64.865	ENSHCOG00000013366	r3hdm1	89	71.707	Hippocampus_comes
ENSXCOG00000017448	r3hdm1	80	69.375	ENSIPUG00000001676	R3HDM1	74	69.903	Ictalurus_punctatus
ENSXCOG00000017448	r3hdm1	81	68.254	ENSIPUG00000013629	r3hdm1	63	68.852	Ictalurus_punctatus
ENSXCOG00000017448	r3hdm1	94	50.385	ENSSTOG00000007572	R3HDM1	83	62.233	Ictidomys_tridecemlineatus
ENSXCOG00000017448	r3hdm1	52	83.416	ENSLBEG00000027981	-	88	83.416	Labrus_bergylta
ENSXCOG00000017448	r3hdm1	94	49.024	ENSLACG00000005334	R3HDM1	71	48.348	Latimeria_chalumnae
ENSXCOG00000017448	r3hdm1	89	53.552	ENSLOCG00000001641	r3hdm1	64	54.447	Lepisosteus_oculatus
ENSXCOG00000017448	r3hdm1	82	67.314	ENSLAFG00000009065	R3HDM1	68	67.314	Loxodonta_africana
ENSXCOG00000017448	r3hdm1	94	50.323	ENSMFAG00000030331	R3HDM1	71	50.064	Macaca_fascicularis
ENSXCOG00000017448	r3hdm1	94	50.194	ENSMMUG00000009844	R3HDM1	71	49.936	Macaca_mulatta
ENSXCOG00000017448	r3hdm1	94	50.453	ENSMNEG00000027793	R3HDM1	71	50.192	Macaca_nemestrina
ENSXCOG00000017448	r3hdm1	94	50.323	ENSMLEG00000043189	R3HDM1	71	50.064	Mandrillus_leucophaeus
ENSXCOG00000017448	r3hdm1	93	75.265	ENSMAMG00000004532	r3hdm1	79	70.301	Mastacembelus_armatus
ENSXCOG00000017448	r3hdm1	93	75.497	ENSMZEG00005003157	r3hdm1	75	74.702	Maylandia_zebra
ENSXCOG00000017448	r3hdm1	93	50.713	ENSMGAG00000012461	R3HDM1	66	49.741	Meleagris_gallopavo
ENSXCOG00000017448	r3hdm1	94	47.101	ENSMAUG00000010315	R3hdm1	83	60.900	Mesocricetus_auratus
ENSXCOG00000017448	r3hdm1	94	50.385	ENSMICG00000005900	-	75	48.743	Microcebus_murinus
ENSXCOG00000017448	r3hdm1	54	61.137	ENSMOCG00000019833	-	83	60.900	Microtus_ochrogaster
ENSXCOG00000017448	r3hdm1	94	47.279	ENSMODG00000000923	R3HDM1	73	46.675	Monodelphis_domestica
ENSXCOG00000017448	r3hdm1	93	73.307	ENSMALG00000009000	r3hdm1	68	71.049	Monopterus_albus
ENSXCOG00000017448	r3hdm1	96	46.118	MGP_CAROLIEiJ_G0014543	R3hdm1	72	75.978	Mus_caroli
ENSXCOG00000017448	r3hdm1	94	47.439	ENSMUSG00000056211	R3hdm1	72	75.978	Mus_musculus
ENSXCOG00000017448	r3hdm1	94	47.073	MGP_PahariEiJ_G0027779	R3hdm1	72	75.978	Mus_pahari
ENSXCOG00000017448	r3hdm1	94	47.381	MGP_SPRETEiJ_G0015350	R3hdm1	72	75.978	Mus_spretus
ENSXCOG00000017448	r3hdm1	94	50.064	ENSMPUG00000002412	R3HDM1	67	50.897	Mustela_putorius_furo
ENSXCOG00000017448	r3hdm1	94	49.109	ENSMLUG00000013824	R3HDM1	67	49.936	Myotis_lucifugus
ENSXCOG00000017448	r3hdm1	94	50.323	ENSNLEG00000008622	R3HDM1	71	50.064	Nomascus_leucogenys
ENSXCOG00000017448	r3hdm1	87	45.862	ENSMEUG00000011784	R3HDM1	68	45.884	Notamacropus_eugenii
ENSXCOG00000017448	r3hdm1	94	47.472	ENSODEG00000008607	R3HDM1	82	63.070	Octodon_degus
ENSXCOG00000017448	r3hdm1	92	74.138	ENSONIG00000012017	r3hdm1	69	73.873	Oreochromis_niloticus
ENSXCOG00000017448	r3hdm1	92	49.799	ENSOANG00000007987	R3HDM1	67	49.105	Ornithorhynchus_anatinus
ENSXCOG00000017448	r3hdm1	94	50.514	ENSOCUG00000017366	R3HDM1	74	50.769	Oryctolagus_cuniculus
ENSXCOG00000017448	r3hdm1	92	71.177	ENSORLG00000004297	r3hdm1	77	71.583	Oryzias_latipes
ENSXCOG00000017448	r3hdm1	92	71.448	ENSORLG00015017355	r3hdm1	76	71.757	Oryzias_latipes_hsok
ENSXCOG00000017448	r3hdm1	56	81.693	ENSOMEG00000003882	-	80	81.609	Oryzias_melastigma
ENSXCOG00000017448	r3hdm1	94	50.259	ENSOGAG00000003136	R3HDM1	67	50.576	Otolemur_garnettii
ENSXCOG00000017448	r3hdm1	94	50.194	ENSOARG00000010788	R3HDM1	67	50.648	Ovis_aries
ENSXCOG00000017448	r3hdm1	94	49.806	ENSPPAG00000027858	R3HDM1	71	49.936	Pan_paniscus
ENSXCOG00000017448	r3hdm1	94	49.807	ENSPPRG00000002626	R3HDM1	71	50.641	Panthera_pardus
ENSXCOG00000017448	r3hdm1	94	49.872	ENSPTIG00000016581	R3HDM1	71	50.769	Panthera_tigris_altaica
ENSXCOG00000017448	r3hdm1	94	49.806	ENSPTRG00000012494	R3HDM1	71	49.936	Pan_troglodytes
ENSXCOG00000017448	r3hdm1	94	50.323	ENSPANG00000026448	R3HDM1	71	50.064	Papio_anubis
ENSXCOG00000017448	r3hdm1	80	72.964	ENSPKIG00000004328	r3hdm1	61	71.987	Paramormyrops_kingsleyae
ENSXCOG00000017448	r3hdm1	57	60.179	ENSPKIG00000011224	R3HDM1	78	60.766	Paramormyrops_kingsleyae
ENSXCOG00000017448	r3hdm1	94	49.547	ENSPSIG00000012915	R3HDM1	67	49.288	Pelodiscus_sinensis
ENSXCOG00000017448	r3hdm1	56	70.000	ENSPMGG00000011264	-	91	66.591	Periophthalmus_magnuspinnatus
ENSXCOG00000017448	r3hdm1	94	47.747	ENSPEMG00000015187	R3hdm1	83	61.137	Peromyscus_maniculatus_bairdii
ENSXCOG00000017448	r3hdm1	92	41.199	ENSPMAG00000003369	-	74	41.323	Petromyzon_marinus
ENSXCOG00000017448	r3hdm1	94	50.777	ENSPCIG00000002491	R3HDM1	70	48.387	Phascolarctos_cinereus
ENSXCOG00000017448	r3hdm1	93	83.736	ENSPFOG00000015036	r3hdm1	76	82.592	Poecilia_formosa
ENSXCOG00000017448	r3hdm1	93	88.441	ENSPLAG00000018042	r3hdm1	78	87.231	Poecilia_latipinna
ENSXCOG00000017448	r3hdm1	93	88.591	ENSPMEG00000023947	r3hdm1	78	87.114	Poecilia_mexicana
ENSXCOG00000017448	r3hdm1	93	88.814	ENSPREG00000007902	r3hdm1	94	92.000	Poecilia_reticulata
ENSXCOG00000017448	r3hdm1	94	49.424	ENSPPYG00000012815	R3HDM1	67	48.542	Pongo_abelii
ENSXCOG00000017448	r3hdm1	89	50.943	ENSPCOG00000012698	R3HDM1	69	50.667	Propithecus_coquereli
ENSXCOG00000017448	r3hdm1	87	46.023	ENSPVAG00000006098	R3HDM1	61	46.620	Pteropus_vampyrus
ENSXCOG00000017448	r3hdm1	73	53.101	ENSPNAG00000004162	arpp21	85	47.368	Pygocentrus_nattereri
ENSXCOG00000017448	r3hdm1	81	71.429	ENSPNAG00000013952	r3hdm1	61	73.115	Pygocentrus_nattereri
ENSXCOG00000017448	r3hdm1	94	47.080	ENSRNOG00000004099	R3hdm1	68	47.181	Rattus_norvegicus
ENSXCOG00000017448	r3hdm1	94	48.387	ENSRBIG00000033317	R3HDM1	74	50.000	Rhinopithecus_bieti
ENSXCOG00000017448	r3hdm1	94	49.614	ENSRROG00000034534	R3HDM1	71	50.000	Rhinopithecus_roxellana
ENSXCOG00000017448	r3hdm1	94	50.712	ENSSBOG00000020389	R3HDM1	71	50.448	Saimiri_boliviensis_boliviensis
ENSXCOG00000017448	r3hdm1	96	49.500	ENSSHAG00000016999	R3HDM1	69	50.130	Sarcophilus_harrisii
ENSXCOG00000017448	r3hdm1	91	50.535	ENSSFOG00015019851	-	64	62.217	Scleropages_formosus
ENSXCOG00000017448	r3hdm1	82	73.927	ENSSFOG00015014134	r3hdm1	65	72.937	Scleropages_formosus
ENSXCOG00000017448	r3hdm1	93	70.634	ENSSMAG00000001669	r3hdm1	70	70.130	Scophthalmus_maximus
ENSXCOG00000017448	r3hdm1	93	74.805	ENSSDUG00000010749	r3hdm1	78	74.675	Seriola_dumerili
ENSXCOG00000017448	r3hdm1	93	75.953	ENSSLDG00000004499	r3hdm1	68	75.558	Seriola_lalandi_dorsalis
ENSXCOG00000017448	r3hdm1	94	49.548	ENSSPUG00000004167	R3HDM1	67	49.223	Sphenodon_punctatus
ENSXCOG00000017448	r3hdm1	93	75.916	ENSSPAG00000004648	r3hdm1	78	75.393	Stegastes_partitus
ENSXCOG00000017448	r3hdm1	94	50.585	ENSSSCG00000015692	R3HDM1	71	51.094	Sus_scrofa
ENSXCOG00000017448	r3hdm1	90	50.135	ENSTGUG00000011750	R3HDM1	64	50.066	Taeniopygia_guttata
ENSXCOG00000017448	r3hdm1	93	69.170	ENSTRUG00000011654	r3hdm1	77	68.643	Takifugu_rubripes
ENSXCOG00000017448	r3hdm1	92	65.499	ENSTNIG00000010362	r3hdm1	73	64.825	Tetraodon_nigroviridis
ENSXCOG00000017448	r3hdm1	94	49.741	ENSTTRG00000003935	R3HDM1	67	50.258	Tursiops_truncatus
ENSXCOG00000017448	r3hdm1	74	69.256	ENSUAMG00000024806	R3HDM1	83	68.285	Ursus_americanus
ENSXCOG00000017448	r3hdm1	94	49.547	ENSUMAG00000005552	R3HDM1	70	50.775	Ursus_maritimus
ENSXCOG00000017448	r3hdm1	90	48.738	ENSVPAG00000007333	R3HDM1	65	49.664	Vicugna_pacos
ENSXCOG00000017448	r3hdm1	94	50.000	ENSVVUG00000006457	R3HDM1	70	50.575	Vulpes_vulpes
ENSXCOG00000017448	r3hdm1	92	48.549	ENSXETG00000019330	r3hdm1	74	49.347	Xenopus_tropicalis
ENSXCOG00000017448	r3hdm1	93	92.568	ENSXMAG00000007885	r3hdm1	76	92.568	Xiphophorus_maculatus