EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000017847 (Gene tree)
Gene ID: -
Gene Symbol: trub1
Alias: zgc:195155
Full Name: TruB pseudouridine (psi) synthase family member 1
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Minus strand
Length: 6673 bases
Position: chrKQ557202.1:1254751-1261423
Accession: ZDB-GENE-080723-73
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000023895	TruB_N	PF01509.18	4.7e-46	1	1
ENSXCOP00000023897	TruB_N	PF01509.18	5.8e-34	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000024179	-	852	-	ENSXCOP00000023895	283 (aa)	-	-
ENSXCOT00000024183	-	285	-	ENSXCOP00000023899	94 (aa)	-	-
ENSXCOT00000024181	-	753	-	ENSXCOP00000023897	250 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000017847's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000017847's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000017847	trub1	69	33.838	ENSXCOG00000008759	trub2	63	34.419

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000017847	trub1	86	65.021	ENSG00000165832	TRUB1	70	65.021	Homo_sapiens
ENSXCOG00000017847	trub1	84	85.294	ENSAPOG00000020565	trub1	88	85.537	Acanthochromis_polyacanthus
ENSXCOG00000017847	trub1	86	64.898	ENSAMEG00000014931	TRUB1	68	65.560	Ailuropoda_melanoleuca
ENSXCOG00000017847	trub1	90	80.769	ENSACIG00000003060	trub1	88	80.769	Amphilophus_citrinellus
ENSXCOG00000017847	trub1	84	85.294	ENSAOCG00000017188	trub1	88	85.537	Amphiprion_ocellaris
ENSXCOG00000017847	trub1	86	85.537	ENSAPEG00000015209	trub1	88	85.537	Amphiprion_percula
ENSXCOG00000017847	trub1	87	84.082	ENSATEG00000023291	trub1	88	84.082	Anabas_testudineus
ENSXCOG00000017847	trub1	86	66.942	ENSAPLG00000006808	TRUB1	87	66.942	Anas_platyrhynchos
ENSXCOG00000017847	trub1	86	63.115	ENSACAG00000009282	TRUB1	88	63.115	Anolis_carolinensis
ENSXCOG00000017847	trub1	86	65.021	ENSANAG00000022870	TRUB1	69	65.021	Aotus_nancymaae
ENSXCOG00000017847	trub1	86	86.364	ENSACLG00000000823	trub1	87	86.364	Astatotilapia_calliptera
ENSXCOG00000017847	trub1	90	71.161	ENSAMXG00000015845	trub1	89	71.161	Astyanax_mexicanus
ENSXCOG00000017847	trub1	86	65.164	ENSBTAG00000012955	TRUB1	69	65.164	Bos_taurus
ENSXCOG00000017847	trub1	86	65.021	ENSCJAG00000047815	TRUB1	69	65.021	Callithrix_jacchus
ENSXCOG00000017847	trub1	86	65.432	ENSCAFG00000011688	TRUB1	76	62.642	Canis_familiaris
ENSXCOG00000017847	trub1	86	65.432	ENSCAFG00020013237	TRUB1	76	62.642	Canis_lupus_dingo
ENSXCOG00000017847	trub1	86	65.574	ENSCHIG00000020884	TRUB1	73	65.574	Capra_hircus
ENSXCOG00000017847	trub1	86	63.786	ENSTSYG00000000446	TRUB1	68	64.435	Carlito_syrichta
ENSXCOG00000017847	trub1	72	58.537	ENSCAPG00000017088	TRUB1	79	58.537	Cavia_aperea
ENSXCOG00000017847	trub1	65	65.027	ENSCPOG00000040236	-	75	65.027	Cavia_porcellus
ENSXCOG00000017847	trub1	66	63.978	ENSCPOG00000030129	-	72	63.978	Cavia_porcellus
ENSXCOG00000017847	trub1	86	65.021	ENSCCAG00000028842	TRUB1	69	65.021	Cebus_capucinus
ENSXCOG00000017847	trub1	86	65.021	ENSCATG00000033431	TRUB1	69	65.021	Cercocebus_atys
ENSXCOG00000017847	trub1	65	63.934	ENSCLAG00000008664	TRUB1	75	63.934	Chinchilla_lanigera
ENSXCOG00000017847	trub1	86	65.021	ENSCSAG00000004891	TRUB1	69	65.021	Chlorocebus_sabaeus
ENSXCOG00000017847	trub1	84	58.824	ENSCHOG00000011931	TRUB1	69	58.824	Choloepus_hoffmanni
ENSXCOG00000017847	trub1	86	68.443	ENSCPBG00000003051	TRUB1	84	68.443	Chrysemys_picta_bellii
ENSXCOG00000017847	trub1	86	65.021	ENSCANG00000029445	TRUB1	69	65.021	Colobus_angolensis_palliatus
ENSXCOG00000017847	trub1	84	56.118	ENSCGRG00001010322	-	65	55.738	Cricetulus_griseus_chok1gshd
ENSXCOG00000017847	trub1	74	65.238	ENSCGRG00001016772	-	70	65.094	Cricetulus_griseus_chok1gshd
ENSXCOG00000017847	trub1	83	63.983	ENSCGRG00000010806	Trub1	79	62.016	Cricetulus_griseus_crigri
ENSXCOG00000017847	trub1	86	79.752	ENSCSEG00000011261	trub1	90	72.401	Cynoglossus_semilaevis
ENSXCOG00000017847	trub1	88	84.274	ENSCVAG00000008791	trub1	76	84.274	Cyprinodon_variegatus
ENSXCOG00000017847	trub1	90	69.466	ENSDARG00000053805	trub1	90	69.466	Danio_rerio
ENSXCOG00000017847	trub1	86	62.963	ENSDNOG00000001069	TRUB1	69	62.963	Dasypus_novemcinctus
ENSXCOG00000017847	trub1	82	65.368	ENSDORG00000010431	Trub1	69	65.126	Dipodomys_ordii
ENSXCOG00000017847	trub1	63	63.504	ENSETEG00000009183	TRUB1	54	60.927	Echinops_telfairi
ENSXCOG00000017847	trub1	86	64.609	ENSEASG00005014739	TRUB1	68	65.272	Equus_asinus_asinus
ENSXCOG00000017847	trub1	86	64.609	ENSECAG00000007177	TRUB1	68	65.272	Equus_caballus
ENSXCOG00000017847	trub1	86	56.790	ENSEEUG00000013993	TRUB1	71	56.471	Erinaceus_europaeus
ENSXCOG00000017847	trub1	95	73.978	ENSELUG00000000502	trub1	94	73.978	Esox_lucius
ENSXCOG00000017847	trub1	86	65.432	ENSFCAG00000031927	TRUB1	68	66.109	Felis_catus
ENSXCOG00000017847	trub1	75	67.136	ENSFALG00000002232	TRUB1	82	67.136	Ficedula_albicollis
ENSXCOG00000017847	trub1	65	65.574	ENSFDAG00000008140	TRUB1	75	65.574	Fukomys_damarensis
ENSXCOG00000017847	trub1	88	88.353	ENSFHEG00000004016	trub1	86	88.353	Fundulus_heteroclitus
ENSXCOG00000017847	trub1	87	64.898	ENSGALG00000009091	TRUB1	86	64.898	Gallus_gallus
ENSXCOG00000017847	trub1	99	93.571	ENSGAFG00000009193	trub1	98	93.571	Gambusia_affinis
ENSXCOG00000017847	trub1	66	85.106	ENSGACG00000015387	trub1	92	85.106	Gasterosteus_aculeatus
ENSXCOG00000017847	trub1	84	70.168	ENSGAGG00000009758	TRUB1	68	70.168	Gopherus_agassizii
ENSXCOG00000017847	trub1	86	65.021	ENSGGOG00000004583	TRUB1	70	65.021	Gorilla_gorilla
ENSXCOG00000017847	trub1	86	85.950	ENSHBUG00000016787	trub1	87	85.950	Haplochromis_burtoni
ENSXCOG00000017847	trub1	84	64.017	ENSHGLG00000015314	TRUB1	68	64.017	Heterocephalus_glaber_female
ENSXCOG00000017847	trub1	65	65.027	ENSHGLG00100009183	TRUB1	77	65.027	Heterocephalus_glaber_male
ENSXCOG00000017847	trub1	89	82.540	ENSHCOG00000017877	trub1	91	82.540	Hippocampus_comes
ENSXCOG00000017847	trub1	85	76.667	ENSIPUG00000017559	trub1	85	76.667	Ictalurus_punctatus
ENSXCOG00000017847	trub1	83	66.809	ENSSTOG00000003641	TRUB1	71	66.809	Ictidomys_tridecemlineatus
ENSXCOG00000017847	trub1	86	64.198	ENSJJAG00000011800	Trub1	71	64.198	Jaculus_jaculus
ENSXCOG00000017847	trub1	87	83.401	ENSKMAG00000006232	trub1	89	83.401	Kryptolebias_marmoratus
ENSXCOG00000017847	trub1	87	82.996	ENSLBEG00000026722	trub1	86	82.996	Labrus_bergylta
ENSXCOG00000017847	trub1	91	70.817	ENSLACG00000014885	TRUB1	86	70.817	Latimeria_chalumnae
ENSXCOG00000017847	trub1	89	74.104	ENSLOCG00000012979	trub1	85	74.104	Lepisosteus_oculatus
ENSXCOG00000017847	trub1	86	65.432	ENSLAFG00000015452	TRUB1	69	65.432	Loxodonta_africana
ENSXCOG00000017847	trub1	86	65.021	ENSMFAG00000031767	TRUB1	69	65.021	Macaca_fascicularis
ENSXCOG00000017847	trub1	86	65.021	ENSMMUG00000001902	TRUB1	69	65.021	Macaca_mulatta
ENSXCOG00000017847	trub1	86	60.494	ENSMNEG00000044646	TRUB1	69	60.494	Macaca_nemestrina
ENSXCOG00000017847	trub1	86	65.021	ENSMLEG00000042655	TRUB1	69	65.021	Mandrillus_leucophaeus
ENSXCOG00000017847	trub1	86	86.364	ENSMZEG00005024095	trub1	87	86.364	Maylandia_zebra
ENSXCOG00000017847	trub1	87	65.854	ENSMGAG00000011135	TRUB1	84	65.854	Meleagris_gallopavo
ENSXCOG00000017847	trub1	83	61.864	ENSMAUG00000011101	Trub1	71	61.728	Mesocricetus_auratus
ENSXCOG00000017847	trub1	86	64.609	ENSMICG00000016324	TRUB1	68	65.272	Microcebus_murinus
ENSXCOG00000017847	trub1	83	64.530	ENSMOCG00000017759	Trub1	73	64.315	Microtus_ochrogaster
ENSXCOG00000017847	trub1	86	66.116	ENSMODG00000009676	TRUB1	70	64.822	Monodelphis_domestica
ENSXCOG00000017847	trub1	85	65.833	MGP_CAROLIEiJ_G0023100	Trub1	76	66.845	Mus_caroli
ENSXCOG00000017847	trub1	85	65.000	ENSMUSG00000025086	Trub1	76	65.775	Mus_musculus
ENSXCOG00000017847	trub1	86	64.754	MGP_PahariEiJ_G0014588	Trub1	72	64.754	Mus_pahari
ENSXCOG00000017847	trub1	85	65.000	MGP_SPRETEiJ_G0024021	Trub1	76	65.775	Mus_spretus
ENSXCOG00000017847	trub1	86	65.432	ENSMPUG00000003556	TRUB1	69	65.432	Mustela_putorius_furo
ENSXCOG00000017847	trub1	86	64.198	ENSMLUG00000017686	TRUB1	78	61.509	Myotis_lucifugus
ENSXCOG00000017847	trub1	86	64.198	ENSNGAG00000018682	Trub1	70	64.198	Nannospalax_galili
ENSXCOG00000017847	trub1	86	85.124	ENSNBRG00000023393	trub1	86	85.124	Neolamprologus_brichardi
ENSXCOG00000017847	trub1	86	65.021	ENSNLEG00000016345	TRUB1	70	65.021	Nomascus_leucogenys
ENSXCOG00000017847	trub1	71	69.652	ENSMEUG00000006603	TRUB1	80	66.977	Notamacropus_eugenii
ENSXCOG00000017847	trub1	86	64.609	ENSOPRG00000009371	TRUB1	75	62.548	Ochotona_princeps
ENSXCOG00000017847	trub1	86	63.115	ENSODEG00000010854	TRUB1	76	60.755	Octodon_degus
ENSXCOG00000017847	trub1	85	85.062	ENSONIG00000007249	trub1	88	85.062	Oreochromis_niloticus
ENSXCOG00000017847	trub1	88	64.919	ENSOANG00000001556	TRUB1	85	64.591	Ornithorhynchus_anatinus
ENSXCOG00000017847	trub1	86	63.786	ENSOCUG00000009456	TRUB1	70	63.786	Oryctolagus_cuniculus
ENSXCOG00000017847	trub1	86	83.884	ENSORLG00000029719	trub1	87	84.016	Oryzias_latipes
ENSXCOG00000017847	trub1	86	83.471	ENSORLG00020016767	trub1	86	83.607	Oryzias_latipes_hni
ENSXCOG00000017847	trub1	86	82.645	ENSORLG00015014728	trub1	87	82.787	Oryzias_latipes_hsok
ENSXCOG00000017847	trub1	86	82.787	ENSOMEG00000014556	trub1	86	82.787	Oryzias_melastigma
ENSXCOG00000017847	trub1	86	65.021	ENSOGAG00000015895	TRUB1	69	65.021	Otolemur_garnettii
ENSXCOG00000017847	trub1	86	63.745	ENSOARG00000015591	TRUB1	71	63.745	Ovis_aries
ENSXCOG00000017847	trub1	86	65.021	ENSPPAG00000043645	TRUB1	70	65.021	Pan_paniscus
ENSXCOG00000017847	trub1	86	65.021	ENSPPRG00000007096	TRUB1	68	65.690	Panthera_pardus
ENSXCOG00000017847	trub1	86	65.021	ENSPTIG00000006378	TRUB1	68	65.690	Panthera_tigris_altaica
ENSXCOG00000017847	trub1	86	65.021	ENSPTRG00000002964	TRUB1	70	65.021	Pan_troglodytes
ENSXCOG00000017847	trub1	86	65.021	ENSPANG00000020712	TRUB1	69	65.021	Papio_anubis
ENSXCOG00000017847	trub1	65	79.012	ENSPKIG00000003852	trub1	70	79.012	Paramormyrops_kingsleyae
ENSXCOG00000017847	trub1	85	69.295	ENSPSIG00000012877	TRUB1	83	69.295	Pelodiscus_sinensis
ENSXCOG00000017847	trub1	86	78.512	ENSPMGG00000000075	trub1	87	78.512	Periophthalmus_magnuspinnatus
ENSXCOG00000017847	trub1	86	65.021	ENSPEMG00000011156	Trub1	70	65.690	Peromyscus_maniculatus_bairdii
ENSXCOG00000017847	trub1	86	66.255	ENSPCIG00000009729	TRUB1	70	64.341	Phascolarctos_cinereus
ENSXCOG00000017847	trub1	88	96.400	ENSPFOG00000009950	trub1	92	96.400	Poecilia_formosa
ENSXCOG00000017847	trub1	88	96.800	ENSPLAG00000013855	trub1	88	96.800	Poecilia_latipinna
ENSXCOG00000017847	trub1	88	96.400	ENSPMEG00000009064	trub1	90	96.400	Poecilia_mexicana
ENSXCOG00000017847	trub1	88	94.000	ENSPREG00000003343	trub1	90	94.000	Poecilia_reticulata
ENSXCOG00000017847	trub1	86	64.609	ENSPPYG00000002676	TRUB1	70	64.609	Pongo_abelii
ENSXCOG00000017847	trub1	86	59.259	ENSPCAG00000008427	TRUB1	69	59.259	Procavia_capensis
ENSXCOG00000017847	trub1	86	59.259	ENSPCOG00000024360	TRUB1	68	59.259	Propithecus_coquereli
ENSXCOG00000017847	trub1	71	68.317	ENSPVAG00000007575	TRUB1	77	68.317	Pteropus_vampyrus
ENSXCOG00000017847	trub1	86	86.364	ENSPNYG00000018614	trub1	87	86.364	Pundamilia_nyererei
ENSXCOG00000017847	trub1	83	76.329	ENSPNAG00000006881	trub1	77	76.329	Pygocentrus_nattereri
ENSXCOG00000017847	trub1	86	63.525	ENSRNOG00000017321	Trub1	72	63.525	Rattus_norvegicus
ENSXCOG00000017847	trub1	86	55.918	ENSRBIG00000033423	TRUB1	66	56.432	Rhinopithecus_bieti
ENSXCOG00000017847	trub1	86	65.021	ENSRROG00000033902	TRUB1	69	65.021	Rhinopithecus_roxellana
ENSXCOG00000017847	trub1	86	65.021	ENSSBOG00000024237	TRUB1	69	65.021	Saimiri_boliviensis_boliviensis
ENSXCOG00000017847	trub1	73	68.269	ENSSHAG00000009346	TRUB1	70	68.269	Sarcophilus_harrisii
ENSXCOG00000017847	trub1	87	76.423	ENSSFOG00015022124	trub1	82	77.593	Scleropages_formosus
ENSXCOG00000017847	trub1	87	83.468	ENSSMAG00000001020	trub1	88	83.468	Scophthalmus_maximus
ENSXCOG00000017847	trub1	82	85.837	ENSSDUG00000016414	trub1	89	85.484	Seriola_dumerili
ENSXCOG00000017847	trub1	82	85.408	ENSSLDG00000015486	trub1	89	85.081	Seriola_lalandi_dorsalis
ENSXCOG00000017847	trub1	89	64.822	ENSSPUG00000001642	TRUB1	87	64.822	Sphenodon_punctatus
ENSXCOG00000017847	trub1	86	86.364	ENSSPAG00000001217	trub1	87	86.364	Stegastes_partitus
ENSXCOG00000017847	trub1	84	65.966	ENSSSCG00000010653	TRUB1	69	65.966	Sus_scrofa
ENSXCOG00000017847	trub1	86	66.116	ENSTGUG00000010971	TRUB1	88	65.182	Taeniopygia_guttata
ENSXCOG00000017847	trub1	72	55.882	ENSTBEG00000002880	TRUB1	80	55.882	Tupaia_belangeri
ENSXCOG00000017847	trub1	71	68.317	ENSTTRG00000005767	TRUB1	77	68.317	Tursiops_truncatus
ENSXCOG00000017847	trub1	86	65.432	ENSUAMG00000024876	TRUB1	69	65.432	Ursus_americanus
ENSXCOG00000017847	trub1	86	65.574	ENSUMAG00000002411	TRUB1	72	67.760	Ursus_maritimus
ENSXCOG00000017847	trub1	86	65.432	ENSVPAG00000005507	TRUB1	68	66.109	Vicugna_pacos
ENSXCOG00000017847	trub1	86	65.432	ENSVVUG00000010085	TRUB1	63	62.595	Vulpes_vulpes
ENSXCOG00000017847	trub1	92	61.397	ENSXETG00000023828	trub1	98	61.397	Xenopus_tropicalis
ENSXCOG00000017847	trub1	88	98.400	ENSXMAG00000014701	trub1	90	98.400	Xiphophorus_maculatus