EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000017888 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Minus strand
Length: 2762 bases
Position: chrKQ557203.1:18147117-18149878
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000023977	RRM_1	PF00076.22	1.4e-33	1	2
ENSXCOP00000023977	RRM_1	PF00076.22	1.4e-33	2	2
ENSXCOP00000023967	RRM_1	PF00076.22	1.6e-33	1	2
ENSXCOP00000023967	RRM_1	PF00076.22	1.6e-33	2	2
ENSXCOP00000023969	RRM_1	PF00076.22	1.8e-33	1	2
ENSXCOP00000023969	RRM_1	PF00076.22	1.8e-33	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000024254	-	753	-	ENSXCOP00000023969	250 (aa)	-	-
ENSXCOT00000024262	-	711	-	ENSXCOP00000023977	236 (aa)	-	-
ENSXCOT00000024252	-	723	-	ENSXCOP00000023967	240 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000017888's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000017888's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000017888	-	83	43.350	ENSXCOG00000018826	srsf4	87	41.322
ENSXCOG00000017888	-	70	44.134	ENSXCOG00000015338	srsf5a	84	39.080
ENSXCOG00000017888	-	68	50.000	ENSXCOG00000001570	srsf5b	59	48.066
ENSXCOG00000017888	-	79	34.419	ENSXCOG00000003212	-	59	35.885
ENSXCOG00000017888	-	78	86.631	ENSXCOG00000009643	-	79	85.789

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000017888	-	75	91.979	ENSACIG00000002623	-	96	91.979	Amphilophus_citrinellus
ENSXCOG00000017888	-	93	92.797	ENSACLG00000021693	-	82	89.855	Astatotilapia_calliptera
ENSXCOG00000017888	-	78	87.166	ENSACLG00000005676	-	79	86.528	Astatotilapia_calliptera
ENSXCOG00000017888	-	78	63.021	WBGene00004700	rsp-3	75	62.887	Caenorhabditis_elegans
ENSXCOG00000017888	-	78	71.505	ENSCING00000007375	-	77	73.370	Ciona_intestinalis
ENSXCOG00000017888	-	53	68.750	ENSCING00000000257	-	77	68.992	Ciona_intestinalis
ENSXCOG00000017888	-	78	70.430	ENSCSAVG00000006093	-	93	72.283	Ciona_savignyi
ENSXCOG00000017888	-	74	54.802	ENSCSAVG00000003567	-	79	63.077	Ciona_savignyi
ENSXCOG00000017888	-	78	67.742	FBgn0283477	SF2	73	68.280	Drosophila_melanogaster
ENSXCOG00000017888	-	98	72.996	ENSEBUG00000009582	-	85	76.923	Eptatretus_burgeri
ENSXCOG00000017888	-	99	98.381	ENSFHEG00000017425	-	100	98.381	Fundulus_heteroclitus
ENSXCOG00000017888	-	75	86.096	ENSGMOG00000010606	-	97	86.188	Gadus_morhua
ENSXCOG00000017888	-	99	99.600	ENSGAFG00000000609	-	100	99.600	Gambusia_affinis
ENSXCOG00000017888	-	78	87.701	ENSGAFG00000012721	-	79	86.082	Gambusia_affinis
ENSXCOG00000017888	-	73	87.429	ENSGACG00000011094	-	96	85.955	Gasterosteus_aculeatus
ENSXCOG00000017888	-	51	60.156	ENSHBUG00000015600	-	92	66.087	Haplochromis_burtoni
ENSXCOG00000017888	-	93	93.191	ENSHBUG00000015576	-	82	90.291	Haplochromis_burtoni
ENSXCOG00000017888	-	78	86.243	ENSHCOG00000008016	-	79	86.458	Hippocampus_comes
ENSXCOG00000017888	-	98	82.773	ENSMFAG00000034223	-	67	84.314	Macaca_fascicularis
ENSXCOG00000017888	-	92	94.595	ENSMZEG00005019071	-	99	91.534	Maylandia_zebra
ENSXCOG00000017888	-	78	87.166	ENSMZEG00005007947	-	79	86.528	Maylandia_zebra
ENSXCOG00000017888	-	80	89.447	ENSMMOG00000018849	-	81	89.163	Mola_mola
ENSXCOG00000017888	-	78	87.166	ENSNBRG00000019981	-	79	86.528	Neolamprologus_brichardi
ENSXCOG00000017888	-	93	92.797	ENSNBRG00000008134	-	79	92.754	Neolamprologus_brichardi
ENSXCOG00000017888	-	66	67.500	ENSOPRG00000004745	-	96	67.500	Ochotona_princeps
ENSXCOG00000017888	-	80	93.659	ENSONIG00000004857	-	83	92.823	Oreochromis_niloticus
ENSXCOG00000017888	-	52	90.323	ENSOANG00000007320	-	55	94.382	Ornithorhynchus_anatinus
ENSXCOG00000017888	-	69	52.410	ENSOCUG00000026856	-	96	53.216	Oryctolagus_cuniculus
ENSXCOG00000017888	-	80	93.970	ENSORLG00000005314	-	92	92.857	Oryzias_latipes
ENSXCOG00000017888	-	80	93.970	ENSORLG00015015497	-	92	92.857	Oryzias_latipes_hsok
ENSXCOG00000017888	-	80	94.527	ENSOMEG00000017711	-	91	87.917	Oryzias_melastigma
ENSXCOG00000017888	-	89	70.563	ENSPLAG00000019613	-	71	85.955	Poecilia_latipinna
ENSXCOG00000017888	-	78	86.631	ENSPLAG00000019553	-	92	84.066	Poecilia_latipinna
ENSXCOG00000017888	-	99	99.598	ENSPREG00000016792	-	100	99.598	Poecilia_reticulata
ENSXCOG00000017888	-	93	92.797	ENSPNYG00000020651	-	79	92.754	Pundamilia_nyererei
ENSXCOG00000017888	-	78	87.166	ENSPNYG00000017115	-	79	86.528	Pundamilia_nyererei
ENSXCOG00000017888	-	83	89.000	ENSSFOG00015004989	-	73	86.275	Scleropages_formosus
ENSXCOG00000017888	-	99	82.000	ENSSDUG00000003887	-	82	86.512	Seriola_dumerili
ENSXCOG00000017888	-	79	86.316	ENSTRUG00000017058	-	82	87.629	Takifugu_rubripes
ENSXCOG00000017888	-	79	83.246	ENSTNIG00000009993	-	82	84.615	Tetraodon_nigroviridis
ENSXCOG00000017888	-	99	100.000	ENSXMAG00000010797	-	100	100.000	Xiphophorus_maculatus