EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXCOG00000018086 (Gene tree)
Gene ID: -
Gene Symbol: sf3b1
Alias: tst|wu:fb99f09
Full Name: splicing factor 3b%2C subunit 1
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Minus strand
Length: 16337 bases
Position: chrKQ557222.1:3103651-3119987
Accession: ZDB-GENE-040827-3
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000024216	SF3b1	PF08920.10	2e-47	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000024507	-	3831	-	ENSXCOP00000024216	1276 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000018086's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000018086's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000018086	sf3b1	100	89.794	ENSG00000115524	SF3B1	94	97.788	Homo_sapiens
ENSXCOG00000018086	sf3b1	100	94.301	ENSAPOG00000011894	sf3b1	100	93.997	Acanthochromis_polyacanthus
ENSXCOG00000018086	sf3b1	99	89.655	ENSAMEG00000013809	SF3B1	99	89.769	Ailuropoda_melanoleuca
ENSXCOG00000018086	sf3b1	100	93.745	ENSACIG00000020910	sf3b1	97	93.440	Amphilophus_citrinellus
ENSXCOG00000018086	sf3b1	100	94.301	ENSAOCG00000004478	sf3b1	100	93.997	Amphiprion_ocellaris
ENSXCOG00000018086	sf3b1	100	94.301	ENSAPEG00000012937	sf3b1	100	93.997	Amphiprion_percula
ENSXCOG00000018086	sf3b1	100	94.373	ENSATEG00000020435	sf3b1	100	94.068	Anabas_testudineus
ENSXCOG00000018086	sf3b1	99	90.092	ENSAPLG00000003993	SF3B1	99	90.208	Anas_platyrhynchos
ENSXCOG00000018086	sf3b1	100	90.015	ENSACAG00000009612	SF3B1	100	90.130	Anolis_carolinensis
ENSXCOG00000018086	sf3b1	100	89.794	ENSANAG00000021577	SF3B1	100	90.768	Aotus_nancymaae
ENSXCOG00000018086	sf3b1	100	93.156	ENSACLG00000023470	sf3b1	100	92.852	Astatotilapia_calliptera
ENSXCOG00000018086	sf3b1	100	92.711	ENSAMXG00000002219	sf3b1	100	92.027	Astyanax_mexicanus
ENSXCOG00000018086	sf3b1	100	89.794	ENSBTAG00000008915	SF3B1	100	89.908	Bos_taurus
ENSXCOG00000018086	sf3b1	99	63.794	WBGene00011605	sftb-1	99	63.946	Caenorhabditis_elegans
ENSXCOG00000018086	sf3b1	100	89.794	ENSCJAG00000003902	SF3B1	100	89.908	Callithrix_jacchus
ENSXCOG00000018086	sf3b1	100	89.794	ENSCAFG00000010826	SF3B1	100	89.908	Canis_familiaris
ENSXCOG00000018086	sf3b1	100	89.794	ENSCAFG00020004750	SF3B1	100	89.908	Canis_lupus_dingo
ENSXCOG00000018086	sf3b1	100	89.794	ENSCHIG00000015226	SF3B1	100	89.908	Capra_hircus
ENSXCOG00000018086	sf3b1	100	89.718	ENSTSYG00000009214	SF3B1	100	89.832	Carlito_syrichta
ENSXCOG00000018086	sf3b1	99	89.610	ENSCAPG00000006547	SF3B1	99	89.724	Cavia_aperea
ENSXCOG00000018086	sf3b1	99	89.716	ENSCPOG00000009353	SF3B1	100	89.831	Cavia_porcellus
ENSXCOG00000018086	sf3b1	100	89.794	ENSCCAG00000020506	SF3B1	100	89.908	Cebus_capucinus
ENSXCOG00000018086	sf3b1	100	89.794	ENSCATG00000035735	SF3B1	100	89.908	Cercocebus_atys
ENSXCOG00000018086	sf3b1	99	89.724	ENSCLAG00000014767	SF3B1	99	89.838	Chinchilla_lanigera
ENSXCOG00000018086	sf3b1	100	89.794	ENSCSAG00000011505	SF3B1	100	89.908	Chlorocebus_sabaeus
ENSXCOG00000018086	sf3b1	78	89.966	ENSCHOG00000009860	SF3B1	76	89.966	Choloepus_hoffmanni
ENSXCOG00000018086	sf3b1	100	90.160	ENSCPBG00000021902	SF3B1	100	90.276	Chrysemys_picta_bellii
ENSXCOG00000018086	sf3b1	67	74.643	ENSCING00000002558	-	99	75.028	Ciona_intestinalis
ENSXCOG00000018086	sf3b1	97	79.968	ENSCSAVG00000002559	-	99	79.905	Ciona_savignyi
ENSXCOG00000018086	sf3b1	100	89.794	ENSCANG00000029415	SF3B1	100	89.908	Colobus_angolensis_palliatus
ENSXCOG00000018086	sf3b1	100	89.794	ENSCGRG00001016990	Sf3b1	100	89.908	Cricetulus_griseus_chok1gshd
ENSXCOG00000018086	sf3b1	100	89.794	ENSCGRG00000005301	Sf3b1	100	89.908	Cricetulus_griseus_crigri
ENSXCOG00000018086	sf3b1	100	90.160	ENSCSEG00000003860	sf3b1	100	89.855	Cynoglossus_semilaevis
ENSXCOG00000018086	sf3b1	96	94.933	ENSCVAG00000003680	sf3b1	99	94.616	Cyprinodon_variegatus
ENSXCOG00000018086	sf3b1	100	92.091	ENSDARG00000056138	sf3b1	100	91.787	Danio_rerio
ENSXCOG00000018086	sf3b1	100	89.726	ENSDNOG00000011754	SF3B1	100	89.840	Dasypus_novemcinctus
ENSXCOG00000018086	sf3b1	99	87.797	ENSDORG00000002399	Sf3b1	100	87.827	Dipodomys_ordii
ENSXCOG00000018086	sf3b1	100	73.961	FBgn0031266	Sf3b1	100	73.961	Drosophila_melanogaster
ENSXCOG00000018086	sf3b1	82	87.856	ENSETEG00000009188	SF3B1	100	87.985	Echinops_telfairi
ENSXCOG00000018086	sf3b1	99	86.342	ENSEBUG00000004325	sf3b1	100	88.612	Eptatretus_burgeri
ENSXCOG00000018086	sf3b1	100	89.794	ENSEASG00005020159	SF3B1	98	89.908	Equus_asinus_asinus
ENSXCOG00000018086	sf3b1	100	89.794	ENSECAG00000021657	SF3B1	98	89.908	Equus_caballus
ENSXCOG00000018086	sf3b1	81	100.000	ENSEEUG00000000836	SF3B1	81	100.000	Erinaceus_europaeus
ENSXCOG00000018086	sf3b1	100	91.843	ENSELUG00000005977	sf3b1	98	91.767	Esox_lucius
ENSXCOG00000018086	sf3b1	100	89.794	ENSFCAG00000005038	SF3B1	100	89.908	Felis_catus
ENSXCOG00000018086	sf3b1	99	90.015	ENSFALG00000004281	SF3B1	99	90.131	Ficedula_albicollis
ENSXCOG00000018086	sf3b1	100	89.794	ENSFDAG00000017510	SF3B1	100	89.908	Fukomys_damarensis
ENSXCOG00000018086	sf3b1	100	94.068	ENSFHEG00000014333	sf3b1	100	93.764	Fundulus_heteroclitus
ENSXCOG00000018086	sf3b1	100	91.781	ENSGMOG00000006773	sf3b1	100	91.933	Gadus_morhua
ENSXCOG00000018086	sf3b1	100	90.160	ENSGALG00000008038	SF3B1	100	90.276	Gallus_gallus
ENSXCOG00000018086	sf3b1	100	97.018	ENSGAFG00000000704	sf3b1	100	96.713	Gambusia_affinis
ENSXCOG00000018086	sf3b1	100	92.993	ENSGACG00000008839	sf3b1	100	92.917	Gasterosteus_aculeatus
ENSXCOG00000018086	sf3b1	100	89.545	ENSGAGG00000017478	SF3B1	100	89.658	Gopherus_agassizii
ENSXCOG00000018086	sf3b1	99	89.378	ENSGGOG00000009264	SF3B1	99	89.378	Gorilla_gorilla
ENSXCOG00000018086	sf3b1	99	93.151	ENSHBUG00000007705	sf3b1	100	92.846	Haplochromis_burtoni
ENSXCOG00000018086	sf3b1	99	89.724	ENSHGLG00000008285	-	99	89.838	Heterocephalus_glaber_female
ENSXCOG00000018086	sf3b1	99	87.730	ENSHGLG00100005535	-	99	87.991	Heterocephalus_glaber_male
ENSXCOG00000018086	sf3b1	100	93.192	ENSHCOG00000016775	sf3b1	100	92.890	Hippocampus_comes
ENSXCOG00000018086	sf3b1	100	92.629	ENSIPUG00000013171	sf3b1	100	92.325	Ictalurus_punctatus
ENSXCOG00000018086	sf3b1	100	89.794	ENSSTOG00000011034	SF3B1	100	89.908	Ictidomys_tridecemlineatus
ENSXCOG00000018086	sf3b1	99	89.684	ENSJJAG00000010903	Sf3b1	99	89.799	Jaculus_jaculus
ENSXCOG00000018086	sf3b1	100	93.632	ENSKMAG00000004009	sf3b1	100	93.328	Kryptolebias_marmoratus
ENSXCOG00000018086	sf3b1	100	93.364	ENSLBEG00000022208	sf3b1	100	93.135	Labrus_bergylta
ENSXCOG00000018086	sf3b1	99	86.585	ENSLACG00000014832	SF3B1	99	86.433	Latimeria_chalumnae
ENSXCOG00000018086	sf3b1	100	91.502	ENSLOCG00000003899	sf3b1	100	91.426	Lepisosteus_oculatus
ENSXCOG00000018086	sf3b1	100	89.794	ENSLAFG00000001956	SF3B1	100	89.908	Loxodonta_africana
ENSXCOG00000018086	sf3b1	99	89.724	ENSMMUG00000022430	SF3B1	99	89.838	Macaca_mulatta
ENSXCOG00000018086	sf3b1	100	89.794	ENSMNEG00000042333	SF3B1	100	90.768	Macaca_nemestrina
ENSXCOG00000018086	sf3b1	94	90.025	ENSMLEG00000026141	SF3B1	98	90.025	Mandrillus_leucophaeus
ENSXCOG00000018086	sf3b1	100	94.144	ENSMAMG00000010241	sf3b1	100	93.840	Mastacembelus_armatus
ENSXCOG00000018086	sf3b1	100	93.156	ENSMZEG00005021254	sf3b1	100	92.852	Maylandia_zebra
ENSXCOG00000018086	sf3b1	99	89.478	ENSMGAG00000007017	SF3B1	99	89.591	Meleagris_gallopavo
ENSXCOG00000018086	sf3b1	99	85.506	ENSMAUG00000009071	Sf3b1	99	85.604	Mesocricetus_auratus
ENSXCOG00000018086	sf3b1	100	89.794	ENSMICG00000013879	SF3B1	100	89.908	Microcebus_murinus
ENSXCOG00000018086	sf3b1	99	85.637	ENSMOCG00000000455	Sf3b1	99	85.736	Microtus_ochrogaster
ENSXCOG00000018086	sf3b1	83	93.431	ENSMMOG00000000475	sf3b1	100	92.518	Mola_mola
ENSXCOG00000018086	sf3b1	100	89.337	ENSMODG00000012275	SF3B1	100	89.450	Monodelphis_domestica
ENSXCOG00000018086	sf3b1	100	94.068	ENSMALG00000017211	sf3b1	100	93.764	Monopterus_albus
ENSXCOG00000018086	sf3b1	100	89.794	MGP_CAROLIEiJ_G0014141	Sf3b1	100	89.908	Mus_caroli
ENSXCOG00000018086	sf3b1	100	89.794	ENSMUSG00000025982	Sf3b1	100	89.908	Mus_musculus
ENSXCOG00000018086	sf3b1	100	89.794	MGP_SPRETEiJ_G0014947	Sf3b1	100	89.908	Mus_spretus
ENSXCOG00000018086	sf3b1	100	89.794	ENSMPUG00000007799	SF3B1	100	89.908	Mustela_putorius_furo
ENSXCOG00000018086	sf3b1	100	88.652	ENSMLUG00000000840	SF3B1	100	88.761	Myotis_lucifugus
ENSXCOG00000018086	sf3b1	99	89.458	ENSNGAG00000021884	-	100	89.571	Nannospalax_galili
ENSXCOG00000018086	sf3b1	100	88.661	ENSNBRG00000015816	sf3b1	100	88.415	Neolamprologus_brichardi
ENSXCOG00000018086	sf3b1	100	89.794	ENSNLEG00000006861	SF3B1	100	89.908	Nomascus_leucogenys
ENSXCOG00000018086	sf3b1	62	95.000	ENSMEUG00000015848	-	66	95.000	Notamacropus_eugenii
ENSXCOG00000018086	sf3b1	100	81.479	ENSOPRG00000008596	SF3B1	100	81.326	Ochotona_princeps
ENSXCOG00000018086	sf3b1	100	89.794	ENSODEG00000011153	-	100	89.908	Octodon_degus
ENSXCOG00000018086	sf3b1	100	93.156	ENSONIG00000013758	sf3b1	100	92.852	Oreochromis_niloticus
ENSXCOG00000018086	sf3b1	84	92.329	ENSOCUG00000012722	-	95	92.329	Oryctolagus_cuniculus
ENSXCOG00000018086	sf3b1	100	93.916	ENSORLG00000020219	sf3b1	100	93.612	Oryzias_latipes
ENSXCOG00000018086	sf3b1	100	93.916	ENSORLG00020001746	sf3b1	100	93.612	Oryzias_latipes_hni
ENSXCOG00000018086	sf3b1	63	90.833	ENSORLG00015001759	sf3b1	98	90.357	Oryzias_latipes_hsok
ENSXCOG00000018086	sf3b1	100	94.221	ENSOMEG00000019231	sf3b1	100	93.916	Oryzias_melastigma
ENSXCOG00000018086	sf3b1	100	89.794	ENSOARG00000015374	SF3B1	100	89.908	Ovis_aries
ENSXCOG00000018086	sf3b1	100	89.794	ENSPPAG00000035007	SF3B1	100	89.908	Pan_paniscus
ENSXCOG00000018086	sf3b1	100	89.794	ENSPPRG00000009090	SF3B1	100	89.908	Panthera_pardus
ENSXCOG00000018086	sf3b1	100	89.794	ENSPTIG00000021557	SF3B1	100	89.908	Panthera_tigris_altaica
ENSXCOG00000018086	sf3b1	99	84.992	ENSPTRG00000012771	SF3B1	99	84.992	Pan_troglodytes
ENSXCOG00000018086	sf3b1	100	89.794	ENSPANG00000013417	SF3B1	100	89.908	Papio_anubis
ENSXCOG00000018086	sf3b1	100	92.009	ENSPKIG00000000784	sf3b1	100	91.857	Paramormyrops_kingsleyae
ENSXCOG00000018086	sf3b1	99	90.469	ENSPSIG00000017222	SF3B1	98	90.469	Pelodiscus_sinensis
ENSXCOG00000018086	sf3b1	90	93.260	ENSPMGG00000004330	sf3b1	99	92.923	Periophthalmus_magnuspinnatus
ENSXCOG00000018086	sf3b1	99	89.724	ENSPEMG00000010699	Sf3b1	100	89.838	Peromyscus_maniculatus_bairdii
ENSXCOG00000018086	sf3b1	100	85.292	ENSPMAG00000001311	sf3b1	100	85.368	Petromyzon_marinus
ENSXCOG00000018086	sf3b1	100	89.337	ENSPCIG00000010642	SF3B1	100	89.450	Phascolarctos_cinereus
ENSXCOG00000018086	sf3b1	100	95.289	ENSPFOG00000000073	sf3b1	100	94.985	Poecilia_formosa
ENSXCOG00000018086	sf3b1	100	95.361	ENSPLAG00000002293	sf3b1	100	95.057	Poecilia_latipinna
ENSXCOG00000018086	sf3b1	100	95.361	ENSPMEG00000000446	sf3b1	98	95.057	Poecilia_mexicana
ENSXCOG00000018086	sf3b1	100	95.437	ENSPREG00000019652	sf3b1	100	95.133	Poecilia_reticulata
ENSXCOG00000018086	sf3b1	84	92.421	ENSPPYG00000013044	SF3B1	94	92.421	Pongo_abelii
ENSXCOG00000018086	sf3b1	100	89.642	ENSPCAG00000009292	SF3B1	100	89.755	Procavia_capensis
ENSXCOG00000018086	sf3b1	100	89.794	ENSPCOG00000024074	SF3B1	100	89.908	Propithecus_coquereli
ENSXCOG00000018086	sf3b1	100	89.794	ENSPVAG00000008302	SF3B1	100	89.908	Pteropus_vampyrus
ENSXCOG00000018086	sf3b1	100	93.080	ENSPNYG00000014939	sf3b1	100	92.776	Pundamilia_nyererei
ENSXCOG00000018086	sf3b1	100	92.559	ENSPNAG00000008288	sf3b1	100	91.951	Pygocentrus_nattereri
ENSXCOG00000018086	sf3b1	100	89.794	ENSRNOG00000013516	Sf3b1	100	89.908	Rattus_norvegicus
ENSXCOG00000018086	sf3b1	99	86.041	ENSRBIG00000026096	SF3B1	100	86.141	Rhinopithecus_bieti
ENSXCOG00000018086	sf3b1	100	89.794	ENSRROG00000031308	SF3B1	100	89.908	Rhinopithecus_roxellana
ENSXCOG00000018086	sf3b1	100	89.794	ENSSBOG00000020080	SF3B1	100	89.908	Saimiri_boliviensis_boliviensis
ENSXCOG00000018086	sf3b1	100	89.337	ENSSHAG00000017564	SF3B1	100	89.450	Sarcophilus_harrisii
ENSXCOG00000018086	sf3b1	100	92.249	ENSSFOG00015021535	sf3b1	100	91.945	Scleropages_formosus
ENSXCOG00000018086	sf3b1	99	93.247	ENSSMAG00000013977	sf3b1	99	93.020	Scophthalmus_maximus
ENSXCOG00000018086	sf3b1	100	94.297	ENSSDUG00000017422	sf3b1	100	93.992	Seriola_dumerili
ENSXCOG00000018086	sf3b1	100	94.373	ENSSLDG00000019495	sf3b1	100	94.068	Seriola_lalandi_dorsalis
ENSXCOG00000018086	sf3b1	77	98.592	ENSSARG00000007016	SF3B1	75	98.592	Sorex_araneus
ENSXCOG00000018086	sf3b1	100	89.855	ENSSPUG00000000410	SF3B1	100	89.969	Sphenodon_punctatus
ENSXCOG00000018086	sf3b1	100	94.221	ENSSPAG00000010451	sf3b1	99	93.916	Stegastes_partitus
ENSXCOG00000018086	sf3b1	91	89.065	ENSSSCG00000016075	SF3B1	100	90.768	Sus_scrofa
ENSXCOG00000018086	sf3b1	100	90.160	ENSTGUG00000010553	SF3B1	100	90.276	Taeniopygia_guttata
ENSXCOG00000018086	sf3b1	100	93.612	ENSTRUG00000015534	sf3b1	100	93.308	Takifugu_rubripes
ENSXCOG00000018086	sf3b1	86	92.141	ENSTBEG00000008714	SF3B1	92	92.141	Tupaia_belangeri
ENSXCOG00000018086	sf3b1	92	90.392	ENSTTRG00000003414	SF3B1	92	90.392	Tursiops_truncatus
ENSXCOG00000018086	sf3b1	84	97.571	ENSUAMG00000018506	SF3B1	99	97.571	Ursus_americanus
ENSXCOG00000018086	sf3b1	100	89.794	ENSUMAG00000020945	SF3B1	100	89.908	Ursus_maritimus
ENSXCOG00000018086	sf3b1	98	91.122	ENSVPAG00000005798	SF3B1	96	91.122	Vicugna_pacos
ENSXCOG00000018086	sf3b1	100	89.794	ENSVVUG00000025948	SF3B1	95	89.908	Vulpes_vulpes
ENSXCOG00000018086	sf3b1	100	89.033	ENSXETG00000013339	sf3b1	100	89.220	Xenopus_tropicalis
ENSXCOG00000018086	sf3b1	100	97.477	ENSXMAG00000007369	sf3b1	100	97.171	Xiphophorus_maculatus