EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXCOG00000018591 (Gene tree)
Gene ID: -
Gene Symbol: upf3a
Alias: -
Full Name: UPF3A%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Minus strand
Length: 5048 bases
Position: chrKQ557222.1:7405890-7410937
Accession: ZDB-GENE-060721-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000024898	Smg4_UPF3	PF03467.15	7.6e-49	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000025202	-	1323	-	ENSXCOP00000024898	440 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000018591's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000018591's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000018591	upf3a	69	49.495	ENSG00000169062	UPF3A	79	49.398	Homo_sapiens
ENSXCOG00000018591	upf3a	50	61.181	ENSACIG00000013582	upf3b	93	46.729	Amphilophus_citrinellus
ENSXCOG00000018591	upf3a	92	43.789	ENSANAG00000021713	UPF3A	96	37.259	Aotus_nancymaae
ENSXCOG00000018591	upf3a	83	41.542	ENSANAG00000025598	-	65	68.116	Aotus_nancymaae
ENSXCOG00000018591	upf3a	73	65.152	ENSCJAG00000019102	UPF3A	73	65.152	Callithrix_jacchus
ENSXCOG00000018591	upf3a	63	72.050	ENSCHIG00000008682	UPF3A	62	63.131	Capra_hircus
ENSXCOG00000018591	upf3a	93	45.119	ENSCCAG00000018406	UPF3A	96	43.290	Cebus_capucinus
ENSXCOG00000018591	upf3a	80	50.126	ENSCSEG00000002046	upf3b	54	72.000	Cynoglossus_semilaevis
ENSXCOG00000018591	upf3a	99	65.880	ENSDARG00000069297	upf3a	100	58.836	Danio_rerio
ENSXCOG00000018591	upf3a	60	57.792	ENSETEG00000010110	UPF3A	68	53.509	Echinops_telfairi
ENSXCOG00000018591	upf3a	55	68.485	ENSFALG00000001569	UPF3B	54	68.047	Ficedula_albicollis
ENSXCOG00000018591	upf3a	68	63.284	ENSGMOG00000019615	upf3a	100	73.780	Gadus_morhua
ENSXCOG00000018591	upf3a	69	50.000	ENSGGOG00000015428	UPF3A	64	50.000	Gorilla_gorilla
ENSXCOG00000018591	upf3a	60	55.333	ENSGGOG00000041219	-	61	55.333	Gorilla_gorilla
ENSXCOG00000018591	upf3a	67	48.619	ENSGGOG00000043074	-	65	48.619	Gorilla_gorilla
ENSXCOG00000018591	upf3a	64	68.692	ENSIPUG00000019249	upf3b	57	71.429	Ictalurus_punctatus
ENSXCOG00000018591	upf3a	57	65.000	ENSLACG00000008691	UPF3B	62	76.000	Latimeria_chalumnae
ENSXCOG00000018591	upf3a	58	35.650	ENSLACG00000006645	UPF3A	50	81.579	Latimeria_chalumnae
ENSXCOG00000018591	upf3a	82	43.765	ENSLAFG00000023358	UPF3A	63	79.021	Loxodonta_africana
ENSXCOG00000018591	upf3a	55	70.667	ENSMAUG00000008705	Upf3b	51	70.667	Mesocricetus_auratus
ENSXCOG00000018591	upf3a	72	49.749	ENSNLEG00000007563	UPF3A	67	49.749	Nomascus_leucogenys
ENSXCOG00000018591	upf3a	82	42.056	ENSOANG00000002594	-	62	73.333	Ornithorhynchus_anatinus
ENSXCOG00000018591	upf3a	63	70.909	ENSOARG00000009004	UPF3A	59	71.779	Ovis_aries
ENSXCOG00000018591	upf3a	81	41.463	ENSPTRG00000041835	-	66	55.333	Pan_troglodytes
ENSXCOG00000018591	upf3a	69	50.000	ENSPTRG00000006073	UPF3A	64	50.000	Pan_troglodytes
ENSXCOG00000018591	upf3a	64	55.333	ENSPTRG00000041187	-	61	55.333	Pan_troglodytes
ENSXCOG00000018591	upf3a	91	44.796	ENSPKIG00000019226	upf3b	93	64.474	Paramormyrops_kingsleyae
ENSXCOG00000018591	upf3a	77	62.555	ENSPCIG00000019590	-	90	65.534	Phascolarctos_cinereus
ENSXCOG00000018591	upf3a	100	91.136	ENSPLAG00000011960	upf3a	100	91.136	Poecilia_latipinna
ENSXCOG00000018591	upf3a	100	90.227	ENSPMEG00000000836	upf3a	100	90.000	Poecilia_mexicana
ENSXCOG00000018591	upf3a	67	69.626	ENSPNAG00000021528	upf3b	59	73.377	Pygocentrus_nattereri
ENSXCOG00000018591	upf3a	99	68.172	ENSSFOG00015021851	upf3a	100	61.224	Scleropages_formosus
ENSXCOG00000018591	upf3a	100	64.570	ENSSDUG00000009680	upf3a	91	89.189	Seriola_dumerili
ENSXCOG00000018591	upf3a	60	72.671	ENSSSCG00000024679	UPF3A	54	71.779	Sus_scrofa
ENSXCOG00000018591	upf3a	72	43.785	ENSTTRG00000015414	UPF3A	74	43.662	Tursiops_truncatus
ENSXCOG00000018591	upf3a	61	67.073	ENSXETG00000007440	upf3b	71	69.325	Xenopus_tropicalis
ENSXCOG00000018591	upf3a	100	93.864	ENSXMAG00000013452	upf3a	100	93.864	Xiphophorus_maculatus