EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000018683 (Gene tree)
Gene ID: -
Gene Symbol: zgc:101559
Alias: -
Full Name: zgc:101559
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Plus strand
Length: 1692 bases
Position: chrKQ557222.1:8610182-8611873
Accession: ZDB-GENE-041114-122
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000025028	MMR_HSR1	PF01926.23	5.9e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000025333	-	705	-	ENSXCOP00000025028	234 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000018683's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000018683's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000018683	zgc:101559	74	39.080	ENSXCOG00000002232	rab6bb	81	39.080
ENSXCOG00000018683	zgc:101559	50	30.508	ENSXCOG00000003892	arl4d	58	30.508
ENSXCOG00000018683	zgc:101559	74	46.821	ENSXCOG00000010695	zgc:171927	81	46.821
ENSXCOG00000018683	zgc:101559	86	60.396	ENSXCOG00000013344	rab33a	80	54.936
ENSXCOG00000018683	zgc:101559	71	35.928	ENSXCOG00000020508	kras	90	36.313
ENSXCOG00000018683	zgc:101559	72	47.619	ENSXCOG00000013842	rab1ab	80	47.619
ENSXCOG00000018683	zgc:101559	84	60.784	ENSXCOG00000000469	rab33ba	85	60.784
ENSXCOG00000018683	zgc:101559	66	35.256	ENSXCOG00000019281	rheb	84	35.256
ENSXCOG00000018683	zgc:101559	79	37.968	ENSXCOG00000016788	rab5c	85	37.968
ENSXCOG00000018683	zgc:101559	80	42.564	ENSXCOG00000010770	-	76	42.564
ENSXCOG00000018683	zgc:101559	64	37.908	ENSXCOG00000009094	rab9b	75	37.908
ENSXCOG00000018683	zgc:101559	60	44.366	ENSXCOG00000009541	rab34a	53	44.366
ENSXCOG00000018683	zgc:101559	53	42.742	ENSXCOG00000009194	-	90	42.742
ENSXCOG00000018683	zgc:101559	74	40.462	ENSXCOG00000009190	-	78	40.462
ENSXCOG00000018683	zgc:101559	78	39.674	ENSXCOG00000020125	rab25a	91	43.066
ENSXCOG00000018683	zgc:101559	73	40.351	ENSXCOG00000020121	rab5aa	77	40.351
ENSXCOG00000018683	zgc:101559	66	35.032	ENSXCOG00000020575	RAB9A	71	35.032
ENSXCOG00000018683	zgc:101559	66	35.669	ENSXCOG00000019054	rab9a	70	35.669
ENSXCOG00000018683	zgc:101559	73	39.766	ENSXCOG00000006300	-	74	39.766
ENSXCOG00000018683	zgc:101559	65	36.709	ENSXCOG00000016370	RAB29	75	36.709
ENSXCOG00000018683	zgc:101559	85	38.350	ENSXCOG00000019310	rab12	82	38.350
ENSXCOG00000018683	zgc:101559	78	39.691	ENSXCOG00000016452	rab22a	96	39.691
ENSXCOG00000018683	zgc:101559	64	43.624	ENSXCOG00000006259	rab6a	71	43.624
ENSXCOG00000018683	zgc:101559	85	49.756	ENSXCOG00000012032	-	91	49.756
ENSXCOG00000018683	zgc:101559	74	31.034	ENSXCOG00000011229	rras2	75	31.724
ENSXCOG00000018683	zgc:101559	81	39.153	ENSXCOG00000001357	rab11a	71	39.153
ENSXCOG00000018683	zgc:101559	66	47.097	ENSXCOG00000006807	rab39bb	72	47.097
ENSXCOG00000018683	zgc:101559	63	40.000	ENSXCOG00000008410	si:dkey-34d22.5	67	40.000
ENSXCOG00000018683	zgc:101559	64	42.282	ENSXCOG00000015802	RAB41	70	42.282
ENSXCOG00000018683	zgc:101559	58	40.876	ENSXCOG00000003192	-	64	40.876
ENSXCOG00000018683	zgc:101559	50	31.356	ENSXCOG00000020384	-	60	31.356
ENSXCOG00000018683	zgc:101559	70	35.976	ENSXCOG00000011864	rab23	71	36.364
ENSXCOG00000018683	zgc:101559	51	30.579	ENSXCOG00000007236	arl4aa	60	30.579
ENSXCOG00000018683	zgc:101559	74	41.040	ENSXCOG00000008042	-	78	41.040
ENSXCOG00000018683	zgc:101559	81	36.316	ENSXCOG00000020608	hrasb	92	36.316
ENSXCOG00000018683	zgc:101559	86	35.885	ENSXCOG00000019921	rab7a	98	35.885
ENSXCOG00000018683	zgc:101559	63	42.568	ENSXCOG00000003428	rab42a	67	42.568
ENSXCOG00000018683	zgc:101559	70	43.293	ENSXCOG00000019533	rab13	85	43.293
ENSXCOG00000018683	zgc:101559	74	38.728	ENSXCOG00000004226	rab11al	79	38.728
ENSXCOG00000018683	zgc:101559	78	37.705	ENSXCOG00000004227	rab25b	84	37.705

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000018683	zgc:101559	100	84.615	ENSAPOG00000007503	zgc:101559	100	84.615	Acanthochromis_polyacanthus
ENSXCOG00000018683	zgc:101559	90	86.667	ENSACIG00000021459	zgc:101559	92	86.667	Amphilophus_citrinellus
ENSXCOG00000018683	zgc:101559	100	84.615	ENSAOCG00000024675	zgc:101559	100	84.615	Amphiprion_ocellaris
ENSXCOG00000018683	zgc:101559	100	84.615	ENSAPEG00000005176	zgc:101559	100	84.615	Amphiprion_percula
ENSXCOG00000018683	zgc:101559	100	82.906	ENSATEG00000007761	zgc:101559	100	82.906	Anabas_testudineus
ENSXCOG00000018683	zgc:101559	99	84.549	ENSACLG00000027006	zgc:101559	99	84.549	Astatotilapia_calliptera
ENSXCOG00000018683	zgc:101559	99	73.707	ENSAMXG00000040460	zgc:101559	94	73.707	Astyanax_mexicanus
ENSXCOG00000018683	zgc:101559	100	77.778	ENSCSEG00000006243	zgc:101559	100	77.778	Cynoglossus_semilaevis
ENSXCOG00000018683	zgc:101559	100	92.735	ENSCVAG00000019227	zgc:101559	100	92.735	Cyprinodon_variegatus
ENSXCOG00000018683	zgc:101559	100	73.191	ENSDARG00000003257	zgc:101559	100	73.191	Danio_rerio
ENSXCOG00000018683	zgc:101559	100	91.026	ENSFHEG00000011483	zgc:101559	100	91.026	Fundulus_heteroclitus
ENSXCOG00000018683	zgc:101559	91	80.660	ENSGMOG00000011665	zgc:101559	99	80.660	Gadus_morhua
ENSXCOG00000018683	zgc:101559	100	96.154	ENSGAFG00000021202	zgc:101559	100	96.154	Gambusia_affinis
ENSXCOG00000018683	zgc:101559	91	80.660	ENSGACG00000001725	zgc:101559	91	80.660	Gasterosteus_aculeatus
ENSXCOG00000018683	zgc:101559	100	84.615	ENSHBUG00000007827	zgc:101559	100	84.615	Haplochromis_burtoni
ENSXCOG00000018683	zgc:101559	100	74.153	ENSHCOG00000009133	zgc:101559	100	76.471	Hippocampus_comes
ENSXCOG00000018683	zgc:101559	92	72.222	ENSIPUG00000022394	zgc:101559	93	72.222	Ictalurus_punctatus
ENSXCOG00000018683	zgc:101559	100	82.979	ENSKMAG00000002862	zgc:101559	100	82.979	Kryptolebias_marmoratus
ENSXCOG00000018683	zgc:101559	100	83.333	ENSLBEG00000025798	zgc:101559	100	83.333	Labrus_bergylta
ENSXCOG00000018683	zgc:101559	85	67.662	ENSLACG00000011557	zgc:101559	87	67.662	Latimeria_chalumnae
ENSXCOG00000018683	zgc:101559	100	69.231	ENSLOCG00000005904	zgc:101559	99	69.231	Lepisosteus_oculatus
ENSXCOG00000018683	zgc:101559	100	82.906	ENSMAMG00000017431	zgc:101559	100	82.906	Mastacembelus_armatus
ENSXCOG00000018683	zgc:101559	100	84.615	ENSMZEG00005021778	zgc:101559	100	84.615	Maylandia_zebra
ENSXCOG00000018683	zgc:101559	100	80.769	ENSMMOG00000019779	zgc:101559	100	80.769	Mola_mola
ENSXCOG00000018683	zgc:101559	100	80.342	ENSMALG00000003712	zgc:101559	100	80.342	Monopterus_albus
ENSXCOG00000018683	zgc:101559	100	83.761	ENSNBRG00000002684	zgc:101559	100	83.761	Neolamprologus_brichardi
ENSXCOG00000018683	zgc:101559	100	84.615	ENSONIG00000006715	-	100	84.615	Oreochromis_niloticus
ENSXCOG00000018683	zgc:101559	100	83.333	ENSORLG00000030642	zgc:101559	100	83.333	Oryzias_latipes
ENSXCOG00000018683	zgc:101559	100	82.479	ENSORLG00020012685	zgc:101559	100	82.479	Oryzias_latipes_hni
ENSXCOG00000018683	zgc:101559	100	82.906	ENSORLG00015016047	zgc:101559	100	82.906	Oryzias_latipes_hsok
ENSXCOG00000018683	zgc:101559	100	84.615	ENSOMEG00000013128	zgc:101559	100	84.615	Oryzias_melastigma
ENSXCOG00000018683	zgc:101559	86	75.248	ENSPKIG00000013397	zgc:101559	85	75.248	Paramormyrops_kingsleyae
ENSXCOG00000018683	zgc:101559	100	96.154	ENSPFOG00000009101	-	100	96.154	Poecilia_formosa
ENSXCOG00000018683	zgc:101559	100	95.726	ENSPLAG00000020627	zgc:101559	100	95.726	Poecilia_latipinna
ENSXCOG00000018683	zgc:101559	100	96.581	ENSPMEG00000010152	zgc:101559	100	96.581	Poecilia_mexicana
ENSXCOG00000018683	zgc:101559	100	97.436	ENSPREG00000007017	zgc:101559	100	97.436	Poecilia_reticulata
ENSXCOG00000018683	zgc:101559	100	84.615	ENSPNYG00000012922	zgc:101559	100	84.615	Pundamilia_nyererei
ENSXCOG00000018683	zgc:101559	99	73.391	ENSPNAG00000017856	zgc:101559	100	73.391	Pygocentrus_nattereri
ENSXCOG00000018683	zgc:101559	97	70.044	ENSSFOG00015006175	zgc:101559	97	70.044	Scleropages_formosus
ENSXCOG00000018683	zgc:101559	99	81.974	ENSSMAG00000002229	zgc:101559	99	81.974	Scophthalmus_maximus
ENSXCOG00000018683	zgc:101559	100	86.752	ENSSDUG00000008151	zgc:101559	100	86.752	Seriola_dumerili
ENSXCOG00000018683	zgc:101559	100	86.752	ENSSLDG00000019214	zgc:101559	100	86.752	Seriola_lalandi_dorsalis
ENSXCOG00000018683	zgc:101559	100	85.470	ENSSPAG00000006404	zgc:101559	100	85.470	Stegastes_partitus
ENSXCOG00000018683	zgc:101559	100	80.342	ENSTRUG00000009903	zgc:101559	100	80.342	Takifugu_rubripes
ENSXCOG00000018683	zgc:101559	93	79.358	ENSTNIG00000015000	zgc:101559	93	78.995	Tetraodon_nigroviridis
ENSXCOG00000018683	zgc:101559	100	99.145	ENSXMAG00000011171	zgc:101559	100	99.145	Xiphophorus_maculatus