EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXCOG00000018724 (Gene tree)
Gene ID: -
Gene Symbol: cmss1
Alias: zgc:101814
Full Name: cms1 ribosomal small subunit homolog
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Minus strand
Length: 6698 bases
Position: chrKQ557222.1:8974891-8981588
Accession: ZDB-GENE-041010-146
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000025076	CMS1	PF14617.6	3.8e-34	1	1
ENSXCOP00000025076	DEAD	PF00270.29	2.3e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000025381	-	879	-	ENSXCOP00000025076	292 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000018724's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000018724's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000018724	cmss1	69	62.376	ENSG00000184220	CMSS1	98	65.000	Homo_sapiens
ENSXCOG00000018724	cmss1	70	84.236	ENSAPOG00000010604	cmss1	100	73.162	Acanthochromis_polyacanthus
ENSXCOG00000018724	cmss1	69	62.562	ENSAMEG00000004092	CMSS1	81	62.201	Ailuropoda_melanoleuca
ENSXCOG00000018724	cmss1	90	64.875	ENSACIG00000021854	cmss1	99	70.037	Amphilophus_citrinellus
ENSXCOG00000018724	cmss1	70	85.222	ENSAOCG00000013361	cmss1	95	74.820	Amphiprion_ocellaris
ENSXCOG00000018724	cmss1	70	85.222	ENSAPEG00000005829	cmss1	95	74.910	Amphiprion_percula
ENSXCOG00000018724	cmss1	88	72.763	ENSATEG00000008209	cmss1	97	70.863	Anabas_testudineus
ENSXCOG00000018724	cmss1	69	60.891	ENSAPLG00000010542	CMSS1	90	61.058	Anas_platyrhynchos
ENSXCOG00000018724	cmss1	69	62.871	ENSACAG00000011065	CMSS1	76	62.500	Anolis_carolinensis
ENSXCOG00000018724	cmss1	69	61.881	ENSANAG00000023565	CMSS1	79	61.538	Aotus_nancymaae
ENSXCOG00000018724	cmss1	91	76.981	ENSACLG00000027294	cmss1	95	75.357	Astatotilapia_calliptera
ENSXCOG00000018724	cmss1	68	63.500	ENSAMXG00000002046	cmss1	94	55.435	Astyanax_mexicanus
ENSXCOG00000018724	cmss1	69	63.366	ENSBTAG00000013663	CMSS1	75	63.462	Bos_taurus
ENSXCOG00000018724	cmss1	69	62.871	ENSCJAG00000000610	CMSS1	79	62.500	Callithrix_jacchus
ENSXCOG00000018724	cmss1	69	62.376	ENSCAFG00000009230	CMSS1	75	62.019	Canis_familiaris
ENSXCOG00000018724	cmss1	69	60.396	ENSCAFG00020024156	-	65	60.096	Canis_lupus_dingo
ENSXCOG00000018724	cmss1	69	62.376	ENSCAFG00020009464	-	76	62.019	Canis_lupus_dingo
ENSXCOG00000018724	cmss1	69	63.366	ENSCHIG00000013003	CMSS1	75	63.462	Capra_hircus
ENSXCOG00000018724	cmss1	69	62.871	ENSTSYG00000009266	CMSS1	80	62.981	Carlito_syrichta
ENSXCOG00000018724	cmss1	64	55.914	ENSCAPG00000013584	CMSS1	87	55.914	Cavia_aperea
ENSXCOG00000018724	cmss1	68	63.500	ENSCPOG00000014680	CMSS1	75	63.942	Cavia_porcellus
ENSXCOG00000018724	cmss1	69	62.376	ENSCCAG00000034685	CMSS1	79	62.019	Cebus_capucinus
ENSXCOG00000018724	cmss1	69	63.366	ENSCATG00000031980	CMSS1	80	62.981	Cercocebus_atys
ENSXCOG00000018724	cmss1	68	62.500	ENSCLAG00000011241	CMSS1	89	62.500	Chinchilla_lanigera
ENSXCOG00000018724	cmss1	69	63.366	ENSCSAG00000006024	CMSS1	85	62.981	Chlorocebus_sabaeus
ENSXCOG00000018724	cmss1	68	46.000	ENSCHOG00000012098	CMSS1	82	45.333	Choloepus_hoffmanni
ENSXCOG00000018724	cmss1	66	44.898	ENSCING00000014848	-	99	45.455	Ciona_intestinalis
ENSXCOG00000018724	cmss1	69	63.366	ENSCANG00000031337	CMSS1	80	62.981	Colobus_angolensis_palliatus
ENSXCOG00000018724	cmss1	69	61.386	ENSCGRG00001014305	Cmss1	74	61.650	Cricetulus_griseus_chok1gshd
ENSXCOG00000018724	cmss1	69	61.386	ENSCGRG00000006722	Cmss1	80	61.650	Cricetulus_griseus_crigri
ENSXCOG00000018724	cmss1	89	67.424	ENSCSEG00000004958	cmss1	94	67.148	Cynoglossus_semilaevis
ENSXCOG00000018724	cmss1	88	81.250	ENSCVAG00000005039	cmss1	95	79.562	Cyprinodon_variegatus
ENSXCOG00000018724	cmss1	70	67.488	ENSDARG00000112579	cmss1	71	67.308	Danio_rerio
ENSXCOG00000018724	cmss1	69	62.376	ENSDNOG00000040418	CMSS1	75	61.538	Dasypus_novemcinctus
ENSXCOG00000018724	cmss1	68	62.500	ENSDORG00000010461	Cmss1	75	62.500	Dipodomys_ordii
ENSXCOG00000018724	cmss1	68	62.000	ENSEASG00005010966	CMSS1	95	62.019	Equus_asinus_asinus
ENSXCOG00000018724	cmss1	68	61.500	ENSECAG00000015662	CMSS1	92	61.538	Equus_caballus
ENSXCOG00000018724	cmss1	68	44.500	ENSEEUG00000007624	-	75	44.712	Erinaceus_europaeus
ENSXCOG00000018724	cmss1	90	61.597	ENSELUG00000019459	cmss1	89	58.696	Esox_lucius
ENSXCOG00000018724	cmss1	68	63.500	ENSFCAG00000044577	CMSS1	75	63.462	Felis_catus
ENSXCOG00000018724	cmss1	69	60.396	ENSFALG00000005816	CMSS1	88	60.577	Ficedula_albicollis
ENSXCOG00000018724	cmss1	69	63.366	ENSFDAG00000012577	CMSS1	91	63.462	Fukomys_damarensis
ENSXCOG00000018724	cmss1	70	88.670	ENSFHEG00000012008	cmss1	86	88.462	Fundulus_heteroclitus
ENSXCOG00000018724	cmss1	70	74.384	ENSGMOG00000016729	cmss1	96	63.309	Gadus_morhua
ENSXCOG00000018724	cmss1	69	61.881	ENSGALG00000015267	CMSS1	80	62.019	Gallus_gallus
ENSXCOG00000018724	cmss1	92	91.045	ENSGAFG00000021217	cmss1	100	91.045	Gambusia_affinis
ENSXCOG00000018724	cmss1	95	65.942	ENSGACG00000002798	cmss1	96	65.942	Gasterosteus_aculeatus
ENSXCOG00000018724	cmss1	69	63.366	ENSGAGG00000019861	CMSS1	81	62.981	Gopherus_agassizii
ENSXCOG00000018724	cmss1	69	62.871	ENSGGOG00000014125	CMSS1	80	62.500	Gorilla_gorilla
ENSXCOG00000018724	cmss1	96	73.944	ENSHBUG00000008431	cmss1	97	75.540	Haplochromis_burtoni
ENSXCOG00000018724	cmss1	68	62.000	ENSHGLG00000019481	CMSS1	85	62.500	Heterocephalus_glaber_female
ENSXCOG00000018724	cmss1	68	62.000	ENSHGLG00100010314	CMSS1	84	62.500	Heterocephalus_glaber_male
ENSXCOG00000018724	cmss1	70	78.818	ENSHCOG00000003222	cmss1	95	65.248	Hippocampus_comes
ENSXCOG00000018724	cmss1	70	69.951	ENSIPUG00000011591	cmss1	95	59.498	Ictalurus_punctatus
ENSXCOG00000018724	cmss1	69	62.871	ENSSTOG00000019366	CMSS1	75	62.500	Ictidomys_tridecemlineatus
ENSXCOG00000018724	cmss1	70	62.745	ENSJJAG00000014894	Cmss1	91	62.745	Jaculus_jaculus
ENSXCOG00000018724	cmss1	92	65.799	ENSKMAG00000002390	cmss1	100	66.171	Kryptolebias_marmoratus
ENSXCOG00000018724	cmss1	70	76.961	ENSLBEG00000006298	cmss1	99	66.667	Labrus_bergylta
ENSXCOG00000018724	cmss1	69	62.871	ENSLACG00000009293	CMSS1	90	62.981	Latimeria_chalumnae
ENSXCOG00000018724	cmss1	69	60.396	ENSLOCG00000009391	cmss1	74	60.000	Lepisosteus_oculatus
ENSXCOG00000018724	cmss1	68	64.500	ENSLAFG00000017509	CMSS1	91	64.904	Loxodonta_africana
ENSXCOG00000018724	cmss1	69	62.871	ENSMFAG00000045006	CMSS1	80	62.500	Macaca_fascicularis
ENSXCOG00000018724	cmss1	69	62.376	ENSMMUG00000002939	CMSS1	88	62.626	Macaca_mulatta
ENSXCOG00000018724	cmss1	69	62.871	ENSMNEG00000031315	CMSS1	80	62.500	Macaca_nemestrina
ENSXCOG00000018724	cmss1	69	62.871	ENSMLEG00000033660	CMSS1	80	62.500	Mandrillus_leucophaeus
ENSXCOG00000018724	cmss1	94	72.000	ENSMAMG00000017176	cmss1	94	72.000	Mastacembelus_armatus
ENSXCOG00000018724	cmss1	91	76.981	ENSMZEG00005021886	cmss1	95	75.357	Maylandia_zebra
ENSXCOG00000018724	cmss1	69	61.881	ENSMGAG00000014360	CMSS1	91	62.019	Meleagris_gallopavo
ENSXCOG00000018724	cmss1	69	40.594	ENSMAUG00000020609	Cmss1	68	41.262	Mesocricetus_auratus
ENSXCOG00000018724	cmss1	68	64.000	ENSMICG00000048977	CMSS1	80	63.942	Microcebus_murinus
ENSXCOG00000018724	cmss1	69	62.376	ENSMOCG00000021937	Cmss1	75	62.136	Microtus_ochrogaster
ENSXCOG00000018724	cmss1	70	78.325	ENSMMOG00000019794	cmss1	86	78.365	Mola_mola
ENSXCOG00000018724	cmss1	69	64.356	ENSMODG00000002275	CMSS1	78	63.942	Monodelphis_domestica
ENSXCOG00000018724	cmss1	90	72.556	ENSMALG00000004250	cmss1	95	70.000	Monopterus_albus
ENSXCOG00000018724	cmss1	69	63.366	MGP_CAROLIEiJ_G0020824	Cmss1	75	63.592	Mus_caroli
ENSXCOG00000018724	cmss1	69	62.871	ENSMUSG00000022748	Cmss1	75	63.107	Mus_musculus
ENSXCOG00000018724	cmss1	69	62.376	MGP_PahariEiJ_G0016524	Cmss1	75	62.621	Mus_pahari
ENSXCOG00000018724	cmss1	69	62.871	MGP_SPRETEiJ_G0021724	Cmss1	75	63.107	Mus_spretus
ENSXCOG00000018724	cmss1	68	62.312	ENSMPUG00000011324	CMSS1	80	62.319	Mustela_putorius_furo
ENSXCOG00000018724	cmss1	68	62.376	ENSMLUG00000001131	CMSS1	80	62.381	Myotis_lucifugus
ENSXCOG00000018724	cmss1	69	61.386	ENSNGAG00000020316	Cmss1	75	61.058	Nannospalax_galili
ENSXCOG00000018724	cmss1	91	75.094	ENSNBRG00000003095	cmss1	95	75.000	Neolamprologus_brichardi
ENSXCOG00000018724	cmss1	68	63.000	ENSNLEG00000034172	CMSS1	80	62.981	Nomascus_leucogenys
ENSXCOG00000018724	cmss1	69	53.960	ENSMEUG00000014505	CMSS1	91	53.846	Notamacropus_eugenii
ENSXCOG00000018724	cmss1	69	63.366	ENSOPRG00000002986	CMSS1	75	62.981	Ochotona_princeps
ENSXCOG00000018724	cmss1	68	62.500	ENSODEG00000005226	-	74	63.107	Octodon_degus
ENSXCOG00000018724	cmss1	69	54.950	ENSODEG00000009446	-	81	55.288	Octodon_degus
ENSXCOG00000018724	cmss1	69	53.465	ENSODEG00000001853	-	73	53.365	Octodon_degus
ENSXCOG00000018724	cmss1	69	60.396	ENSODEG00000003558	-	77	60.096	Octodon_degus
ENSXCOG00000018724	cmss1	89	70.397	ENSONIG00000006678	cmss1	100	76.604	Oreochromis_niloticus
ENSXCOG00000018724	cmss1	71	61.538	ENSOANG00000007529	CMSS1	89	62.319	Ornithorhynchus_anatinus
ENSXCOG00000018724	cmss1	69	62.871	ENSOCUG00000025366	CMSS1	75	62.500	Oryctolagus_cuniculus
ENSXCOG00000018724	cmss1	89	73.946	ENSORLG00000020340	cmss1	95	71.071	Oryzias_latipes
ENSXCOG00000018724	cmss1	71	75.000	ENSORLG00020012235	cmss1	88	75.000	Oryzias_latipes_hni
ENSXCOG00000018724	cmss1	91	63.469	ENSORLG00015015551	cmss1	100	63.941	Oryzias_latipes_hsok
ENSXCOG00000018724	cmss1	90	73.384	ENSOMEG00000012555	cmss1	92	72.963	Oryzias_melastigma
ENSXCOG00000018724	cmss1	69	63.861	ENSOGAG00000002045	CMSS1	91	63.462	Otolemur_garnettii
ENSXCOG00000018724	cmss1	69	63.054	ENSOARG00000017899	CMSS1	72	63.158	Ovis_aries
ENSXCOG00000018724	cmss1	69	62.871	ENSPPAG00000038515	CMSS1	76	62.500	Pan_paniscus
ENSXCOG00000018724	cmss1	68	63.500	ENSPPRG00000016767	CMSS1	75	63.462	Panthera_pardus
ENSXCOG00000018724	cmss1	68	63.000	ENSPTIG00000018274	CMSS1	75	62.981	Panthera_tigris_altaica
ENSXCOG00000018724	cmss1	69	62.871	ENSPTRG00000015157	CMSS1	85	62.500	Pan_troglodytes
ENSXCOG00000018724	cmss1	69	63.366	ENSPANG00000019980	CMSS1	83	62.981	Papio_anubis
ENSXCOG00000018724	cmss1	93	61.255	ENSPKIG00000012609	cmss1	99	61.029	Paramormyrops_kingsleyae
ENSXCOG00000018724	cmss1	69	62.871	ENSPSIG00000003849	CMSS1	91	62.500	Pelodiscus_sinensis
ENSXCOG00000018724	cmss1	70	76.471	ENSPMGG00000010286	cmss1	90	76.555	Periophthalmus_magnuspinnatus
ENSXCOG00000018724	cmss1	69	61.386	ENSPEMG00000016384	Cmss1	74	61.650	Peromyscus_maniculatus_bairdii
ENSXCOG00000018724	cmss1	70	50.980	ENSPMAG00000001146	cmss1	100	50.980	Petromyzon_marinus
ENSXCOG00000018724	cmss1	69	62.871	ENSPCIG00000015656	CMSS1	79	62.500	Phascolarctos_cinereus
ENSXCOG00000018724	cmss1	89	79.783	ENSPFOG00000016849	cmss1	95	87.912	Poecilia_formosa
ENSXCOG00000018724	cmss1	89	79.422	ENSPLAG00000008323	cmss1	95	87.546	Poecilia_latipinna
ENSXCOG00000018724	cmss1	89	79.783	ENSPMEG00000021020	cmss1	95	88.000	Poecilia_mexicana
ENSXCOG00000018724	cmss1	100	86.395	ENSPREG00000007618	cmss1	94	86.957	Poecilia_reticulata
ENSXCOG00000018724	cmss1	69	64.356	ENSPPYG00000013606	CMSS1	76	63.942	Pongo_abelii
ENSXCOG00000018724	cmss1	68	63.500	ENSPCOG00000020035	CMSS1	80	63.462	Propithecus_coquereli
ENSXCOG00000018724	cmss1	68	51.500	ENSPVAG00000017031	CMSS1	75	51.923	Pteropus_vampyrus
ENSXCOG00000018724	cmss1	82	76.569	ENSPNYG00000013428	cmss1	92	74.803	Pundamilia_nyererei
ENSXCOG00000018724	cmss1	90	58.935	ENSPNAG00000007912	cmss1	71	67.788	Pygocentrus_nattereri
ENSXCOG00000018724	cmss1	69	62.871	ENSRNOG00000027888	Cmss1	80	63.107	Rattus_norvegicus
ENSXCOG00000018724	cmss1	69	62.871	ENSRBIG00000037931	CMSS1	80	62.500	Rhinopithecus_bieti
ENSXCOG00000018724	cmss1	69	62.871	ENSRROG00000042910	CMSS1	80	62.500	Rhinopithecus_roxellana
ENSXCOG00000018724	cmss1	69	62.871	ENSSBOG00000030980	CMSS1	79	62.500	Saimiri_boliviensis_boliviensis
ENSXCOG00000018724	cmss1	69	63.861	ENSSHAG00000009321	CMSS1	82	63.462	Sarcophilus_harrisii
ENSXCOG00000018724	cmss1	70	72.906	ENSSFOG00015001509	cmss1	72	73.077	Scleropages_formosus
ENSXCOG00000018724	cmss1	88	73.930	ENSSMAG00000001653	cmss1	94	72.000	Scophthalmus_maximus
ENSXCOG00000018724	cmss1	96	69.831	ENSSDUG00000007719	cmss1	95	75.090	Seriola_dumerili
ENSXCOG00000018724	cmss1	96	72.759	ENSSLDG00000012300	cmss1	95	74.296	Seriola_lalandi_dorsalis
ENSXCOG00000018724	cmss1	69	51.980	ENSSARG00000003584	CMSS1	74	51.923	Sorex_araneus
ENSXCOG00000018724	cmss1	69	60.891	ENSSPUG00000003865	CMSS1	92	60.577	Sphenodon_punctatus
ENSXCOG00000018724	cmss1	95	75.269	ENSSPAG00000019182	cmss1	82	75.451	Stegastes_partitus
ENSXCOG00000018724	cmss1	68	62.000	ENSSSCG00000011970	CMSS1	75	62.019	Sus_scrofa
ENSXCOG00000018724	cmss1	69	60.396	ENSTGUG00000013635	CMSS1	91	60.577	Taeniopygia_guttata
ENSXCOG00000018724	cmss1	95	64.388	ENSTRUG00000015265	cmss1	74	77.619	Takifugu_rubripes
ENSXCOG00000018724	cmss1	70	71.921	ENSTNIG00000002880	cmss1	76	71.429	Tetraodon_nigroviridis
ENSXCOG00000018724	cmss1	69	44.554	ENSTBEG00000016722	CMSS1	74	45.192	Tupaia_belangeri
ENSXCOG00000018724	cmss1	69	60.891	ENSTTRG00000001562	CMSS1	74	61.058	Tursiops_truncatus
ENSXCOG00000018724	cmss1	69	63.366	ENSUAMG00000024209	CMSS1	93	62.981	Ursus_americanus
ENSXCOG00000018724	cmss1	69	62.871	ENSUMAG00000001983	CMSS1	80	62.500	Ursus_maritimus
ENSXCOG00000018724	cmss1	55	61.250	ENSVPAG00000000263	CMSS1	57	61.250	Vicugna_pacos
ENSXCOG00000018724	cmss1	68	62.000	ENSVVUG00000021647	-	85	62.019	Vulpes_vulpes
ENSXCOG00000018724	cmss1	69	61.386	ENSVVUG00000007776	-	82	61.058	Vulpes_vulpes
ENSXCOG00000018724	cmss1	94	52.000	ENSXETG00000011858	cmss1	75	60.476	Xenopus_tropicalis
ENSXCOG00000018724	cmss1	91	99.625	ENSXMAG00000011243	cmss1	100	99.625	Xiphophorus_maculatus