EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXCOG00000018838 (Gene tree)
Gene ID: -
Gene Symbol: smfn
Alias: zgc:73191
Full Name: small fragment nuclease
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Plus strand
Length: 9584 bases
Position: chrKQ557203.1:25158518-25168101
Accession: ZDB-GENE-040426-1709
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000025228	RNase_T	PF00929.24	1.4e-29	1	1
ENSXCOP00000025226	RNase_T	PF00929.24	1.4e-29	1	1
ENSXCOP00000025224	RNase_T	PF00929.24	2.4e-29	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000025531	-	591	-	ENSXCOP00000025226	196 (aa)	-	-
ENSXCOT00000025533	-	594	-	ENSXCOP00000025228	197 (aa)	-	-
ENSXCOT00000025529	-	732	-	ENSXCOP00000025224	243 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000018838's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000018838's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000018838	smfn	95	77.419	ENSG00000076043	REXO2	99	77.419	Homo_sapiens
ENSXCOG00000018838	smfn	59	86.087	ENSAPOG00000011971	smfn	99	86.087	Acanthochromis_polyacanthus
ENSXCOG00000018838	smfn	95	78.495	ENSAMEG00000013263	REXO2	85	73.762	Ailuropoda_melanoleuca
ENSXCOG00000018838	smfn	95	81.720	ENSACIG00000023553	smfn	100	81.720	Amphilophus_citrinellus
ENSXCOG00000018838	smfn	68	83.459	ENSAOCG00000011565	smfn	81	83.459	Amphiprion_ocellaris
ENSXCOG00000018838	smfn	94	85.405	ENSAPEG00000012435	smfn	69	85.405	Amphiprion_percula
ENSXCOG00000018838	smfn	95	84.409	ENSATEG00000015385	smfn	67	84.409	Anabas_testudineus
ENSXCOG00000018838	smfn	95	76.882	ENSAPLG00000005045	REXO2	93	76.471	Anas_platyrhynchos
ENSXCOG00000018838	smfn	89	68.966	ENSACAG00000011631	REXO2	85	66.851	Anolis_carolinensis
ENSXCOG00000018838	smfn	95	77.957	ENSANAG00000020834	REXO2	94	67.556	Aotus_nancymaae
ENSXCOG00000018838	smfn	59	63.793	ENSANAG00000027457	-	98	58.741	Aotus_nancymaae
ENSXCOG00000018838	smfn	95	82.796	ENSACLG00000024566	smfn	96	83.152	Astatotilapia_calliptera
ENSXCOG00000018838	smfn	95	78.495	ENSBTAG00000005843	REXO2	94	68.000	Bos_taurus
ENSXCOG00000018838	smfn	85	50.000	WBGene00007429	C08B6.8	88	55.072	Caenorhabditis_elegans
ENSXCOG00000018838	smfn	95	76.882	ENSCJAG00000012434	REXO2	95	66.522	Callithrix_jacchus
ENSXCOG00000018838	smfn	95	77.419	ENSCAFG00000013511	REXO2	94	67.556	Canis_familiaris
ENSXCOG00000018838	smfn	95	78.495	ENSCAFG00020002513	REXO2	94	68.444	Canis_lupus_dingo
ENSXCOG00000018838	smfn	95	78.495	ENSCHIG00000009264	REXO2	94	68.000	Capra_hircus
ENSXCOG00000018838	smfn	95	77.957	ENSTSYG00000002237	REXO2	81	75.648	Carlito_syrichta
ENSXCOG00000018838	smfn	95	67.914	ENSTSYG00000027948	-	96	67.914	Carlito_syrichta
ENSXCOG00000018838	smfn	95	77.957	ENSCAPG00000006093	REXO2	99	77.957	Cavia_aperea
ENSXCOG00000018838	smfn	95	77.957	ENSCPOG00000010548	REXO2	85	73.267	Cavia_porcellus
ENSXCOG00000018838	smfn	95	77.957	ENSCCAG00000034979	REXO2	95	67.391	Cebus_capucinus
ENSXCOG00000018838	smfn	85	81.325	ENSCATG00000015278	REXO2	94	67.111	Cercocebus_atys
ENSXCOG00000018838	smfn	95	77.957	ENSCLAG00000011195	REXO2	86	73.267	Chinchilla_lanigera
ENSXCOG00000018838	smfn	85	81.325	ENSCSAG00000002754	REXO2	94	67.111	Chlorocebus_sabaeus
ENSXCOG00000018838	smfn	51	74.286	ENSCHOG00000013497	REXO2	94	62.963	Choloepus_hoffmanni
ENSXCOG00000018838	smfn	95	76.344	ENSCHOG00000000642	-	95	66.087	Choloepus_hoffmanni
ENSXCOG00000018838	smfn	73	72.028	ENSCPBG00000009359	REXO2	99	72.028	Chrysemys_picta_bellii
ENSXCOG00000018838	smfn	85	57.229	ENSCING00000009858	-	83	55.491	Ciona_intestinalis
ENSXCOG00000018838	smfn	85	81.325	ENSCANG00000034756	REXO2	94	67.111	Colobus_angolensis_palliatus
ENSXCOG00000018838	smfn	95	77.419	ENSCGRG00001019814	-	85	72.772	Cricetulus_griseus_chok1gshd
ENSXCOG00000018838	smfn	95	75.269	ENSCGRG00001010922	-	93	73.822	Cricetulus_griseus_chok1gshd
ENSXCOG00000018838	smfn	95	75.806	ENSCGRG00001013673	-	99	71.287	Cricetulus_griseus_chok1gshd
ENSXCOG00000018838	smfn	95	77.419	ENSCGRG00000006235	Rexo2	85	72.772	Cricetulus_griseus_crigri
ENSXCOG00000018838	smfn	94	80.978	ENSCSEG00000007214	smfn	68	79.365	Cynoglossus_semilaevis
ENSXCOG00000018838	smfn	93	89.617	ENSCVAG00000012008	smfn	99	89.617	Cyprinodon_variegatus
ENSXCOG00000018838	smfn	100	74.627	ENSDARG00000009806	smfn	99	62.595	Danio_rerio
ENSXCOG00000018838	smfn	82	82.500	ENSDNOG00000046533	REXO2	80	79.641	Dasypus_novemcinctus
ENSXCOG00000018838	smfn	95	60.215	ENSDORG00000025142	-	83	59.162	Dipodomys_ordii
ENSXCOG00000018838	smfn	95	77.957	ENSDORG00000011255	Rexo2	95	67.391	Dipodomys_ordii
ENSXCOG00000018838	smfn	85	55.090	FBgn0039115	CG10214	82	54.070	Drosophila_melanogaster
ENSXCOG00000018838	smfn	86	76.190	ENSEBUG00000013964	REXO2	58	76.190	Eptatretus_burgeri
ENSXCOG00000018838	smfn	95	78.495	ENSEASG00005006674	REXO2	94	68.000	Equus_asinus_asinus
ENSXCOG00000018838	smfn	95	78.495	ENSECAG00000005988	REXO2	94	68.000	Equus_caballus
ENSXCOG00000018838	smfn	92	81.111	ENSELUG00000020072	smfn	66	77.368	Esox_lucius
ENSXCOG00000018838	smfn	95	78.495	ENSFCAG00000018632	REXO2	94	68.000	Felis_catus
ENSXCOG00000018838	smfn	98	73.711	ENSFALG00000010044	REXO2	96	73.711	Ficedula_albicollis
ENSXCOG00000018838	smfn	95	77.957	ENSFDAG00000011764	REXO2	85	73.267	Fukomys_damarensis
ENSXCOG00000018838	smfn	88	80.925	ENSGMOG00000006370	smfn	92	79.213	Gadus_morhua
ENSXCOG00000018838	smfn	95	76.344	ENSGALG00000035980	REXO2	80	76.882	Gallus_gallus
ENSXCOG00000018838	smfn	94	96.757	ENSGAFG00000015349	smfn	66	96.757	Gambusia_affinis
ENSXCOG00000018838	smfn	91	86.517	ENSGACG00000020096	smfn	90	84.699	Gasterosteus_aculeatus
ENSXCOG00000018838	smfn	91	79.775	ENSGAGG00000021126	REXO2	84	74.490	Gopherus_agassizii
ENSXCOG00000018838	smfn	85	81.325	ENSGGOG00000023267	REXO2	94	67.111	Gorilla_gorilla
ENSXCOG00000018838	smfn	67	81.818	ENSHBUG00000020097	REXO2	64	81.818	Haplochromis_burtoni
ENSXCOG00000018838	smfn	95	77.419	ENSHGLG00000013556	REXO2	85	72.772	Heterocephalus_glaber_female
ENSXCOG00000018838	smfn	95	77.957	ENSHGLG00100005257	REXO2	85	73.267	Heterocephalus_glaber_male
ENSXCOG00000018838	smfn	90	77.966	ENSHCOG00000007122	smfn	99	77.966	Hippocampus_comes
ENSXCOG00000018838	smfn	95	80.108	ENSIPUG00000020440	rexo2	68	80.978	Ictalurus_punctatus
ENSXCOG00000018838	smfn	95	77.957	ENSSTOG00000012465	REXO2	94	68.000	Ictidomys_tridecemlineatus
ENSXCOG00000018838	smfn	95	77.957	ENSJJAG00000013710	-	94	67.556	Jaculus_jaculus
ENSXCOG00000018838	smfn	95	54.301	ENSJJAG00000022605	-	77	52.850	Jaculus_jaculus
ENSXCOG00000018838	smfn	94	82.796	ENSKMAG00000016795	smfn	67	81.915	Kryptolebias_marmoratus
ENSXCOG00000018838	smfn	93	81.319	ENSLBEG00000006021	smfn	96	81.319	Labrus_bergylta
ENSXCOG00000018838	smfn	96	67.179	ENSLACG00000018623	REXO2	84	64.251	Latimeria_chalumnae
ENSXCOG00000018838	smfn	95	79.032	ENSLOCG00000002389	smfn	92	76.684	Lepisosteus_oculatus
ENSXCOG00000018838	smfn	95	77.419	ENSLAFG00000012451	REXO2	85	72.772	Loxodonta_africana
ENSXCOG00000018838	smfn	85	81.325	ENSMFAG00000041155	REXO2	94	67.111	Macaca_fascicularis
ENSXCOG00000018838	smfn	85	81.325	ENSMMUG00000012269	REXO2	94	67.111	Macaca_mulatta
ENSXCOG00000018838	smfn	85	81.325	ENSMNEG00000033379	REXO2	94	67.111	Macaca_nemestrina
ENSXCOG00000018838	smfn	85	81.325	ENSMLEG00000036571	REXO2	94	67.111	Mandrillus_leucophaeus
ENSXCOG00000018838	smfn	95	83.871	ENSMAMG00000021209	smfn	69	82.199	Mastacembelus_armatus
ENSXCOG00000018838	smfn	95	82.796	ENSMZEG00005020730	REXO2	74	80.311	Maylandia_zebra
ENSXCOG00000018838	smfn	95	82.796	ENSMZEG00005023224	-	74	80.311	Maylandia_zebra
ENSXCOG00000018838	smfn	81	73.913	ENSMGAG00000003026	REXO2	99	73.913	Meleagris_gallopavo
ENSXCOG00000018838	smfn	95	77.419	ENSMAUG00000014576	Rexo2	85	72.772	Mesocricetus_auratus
ENSXCOG00000018838	smfn	95	77.957	ENSMICG00000010094	REXO2	94	67.556	Microcebus_murinus
ENSXCOG00000018838	smfn	95	77.419	ENSMOCG00000009016	Rexo2	85	72.772	Microtus_ochrogaster
ENSXCOG00000018838	smfn	95	81.720	ENSMMOG00000006430	smfn	71	80.105	Mola_mola
ENSXCOG00000018838	smfn	95	77.419	ENSMODG00000013913	REXO2	86	72.772	Monodelphis_domestica
ENSXCOG00000018838	smfn	95	80.645	ENSMALG00000018130	smfn	53	80.645	Monopterus_albus
ENSXCOG00000018838	smfn	92	78.453	MGP_CAROLIEiJ_G0032166	Rexo2	93	66.518	Mus_caroli
ENSXCOG00000018838	smfn	92	78.453	ENSMUSG00000032026	Rexo2	92	67.727	Mus_musculus
ENSXCOG00000018838	smfn	92	78.453	MGP_PahariEiJ_G0015034	Rexo2	92	67.727	Mus_pahari
ENSXCOG00000018838	smfn	92	78.453	MGP_SPRETEiJ_G0033305	Rexo2	92	67.727	Mus_spretus
ENSXCOG00000018838	smfn	95	78.495	ENSMPUG00000003947	REXO2	94	68.444	Mustela_putorius_furo
ENSXCOG00000018838	smfn	95	76.882	ENSMLUG00000009030	REXO2	94	66.667	Myotis_lucifugus
ENSXCOG00000018838	smfn	95	77.419	ENSNGAG00000008819	Rexo2	93	75.916	Nannospalax_galili
ENSXCOG00000018838	smfn	95	81.720	ENSNBRG00000006529	smfn	97	81.720	Neolamprologus_brichardi
ENSXCOG00000018838	smfn	85	81.325	ENSNLEG00000029745	REXO2	94	67.111	Nomascus_leucogenys
ENSXCOG00000018838	smfn	95	76.882	ENSMEUG00000011558	REXO2	93	72.277	Notamacropus_eugenii
ENSXCOG00000018838	smfn	67	73.485	ENSOPRG00000011076	REXO2	56	73.485	Ochotona_princeps
ENSXCOG00000018838	smfn	95	77.957	ENSODEG00000009750	-	99	77.957	Octodon_degus
ENSXCOG00000018838	smfn	82	65.839	ENSODEG00000016046	-	82	64.458	Octodon_degus
ENSXCOG00000018838	smfn	95	83.333	ENSONIG00000001954	smfn	82	81.675	Oreochromis_niloticus
ENSXCOG00000018838	smfn	95	76.882	ENSOANG00000001754	REXO2	81	74.611	Ornithorhynchus_anatinus
ENSXCOG00000018838	smfn	95	77.957	ENSOCUG00000004274	REXO2	81	73.267	Oryctolagus_cuniculus
ENSXCOG00000018838	smfn	94	78.919	ENSORLG00000005119	smfn	62	77.368	Oryzias_latipes
ENSXCOG00000018838	smfn	94	79.459	ENSORLG00020010121	smfn	62	77.895	Oryzias_latipes_hni
ENSXCOG00000018838	smfn	94	80.000	ENSORLG00015015699	smfn	60	80.000	Oryzias_latipes_hsok
ENSXCOG00000018838	smfn	72	73.239	ENSOMEG00000008940	-	99	73.239	Oryzias_melastigma
ENSXCOG00000018838	smfn	94	75.676	ENSOMEG00000016878	REXO2	70	74.211	Oryzias_melastigma
ENSXCOG00000018838	smfn	95	77.957	ENSOGAG00000016860	REXO2	94	67.556	Otolemur_garnettii
ENSXCOG00000018838	smfn	95	78.495	ENSOARG00000001040	REXO2	90	76.963	Ovis_aries
ENSXCOG00000018838	smfn	85	81.325	ENSPPAG00000039849	REXO2	85	72.772	Pan_paniscus
ENSXCOG00000018838	smfn	95	78.495	ENSPPRG00000007255	REXO2	94	68.000	Panthera_pardus
ENSXCOG00000018838	smfn	95	78.495	ENSPTIG00000015578	REXO2	99	78.495	Panthera_tigris_altaica
ENSXCOG00000018838	smfn	85	81.325	ENSPTRG00000004306	REXO2	85	72.772	Pan_troglodytes
ENSXCOG00000018838	smfn	85	81.325	ENSPANG00000010675	REXO2	94	67.111	Papio_anubis
ENSXCOG00000018838	smfn	95	81.183	ENSPKIG00000000911	smfn	77	83.108	Paramormyrops_kingsleyae
ENSXCOG00000018838	smfn	95	77.419	ENSPSIG00000005151	REXO2	66	79.558	Pelodiscus_sinensis
ENSXCOG00000018838	smfn	95	81.183	ENSPMGG00000007442	smfn	99	81.183	Periophthalmus_magnuspinnatus
ENSXCOG00000018838	smfn	81	71.069	ENSPEMG00000001421	Rexo2	74	69.182	Peromyscus_maniculatus_bairdii
ENSXCOG00000018838	smfn	58	73.684	ENSPMAG00000001022	REXO2	98	73.684	Petromyzon_marinus
ENSXCOG00000018838	smfn	95	77.419	ENSPCIG00000011227	REXO2	50	77.419	Phascolarctos_cinereus
ENSXCOG00000018838	smfn	95	96.237	ENSPFOG00000017861	smfn	94	94.211	Poecilia_formosa
ENSXCOG00000018838	smfn	83	92.025	ENSPLAG00000007327	REXO2	62	92.025	Poecilia_latipinna
ENSXCOG00000018838	smfn	95	95.699	ENSPMEG00000017343	smfn	68	93.717	Poecilia_mexicana
ENSXCOG00000018838	smfn	100	91.878	ENSPREG00000016438	smfn	68	94.241	Poecilia_reticulata
ENSXCOG00000018838	smfn	85	81.325	ENSPPYG00000003895	REXO2	94	67.111	Pongo_abelii
ENSXCOG00000018838	smfn	95	76.882	ENSPCAG00000005237	REXO2	85	72.277	Procavia_capensis
ENSXCOG00000018838	smfn	74	82.192	ENSPCOG00000027639	REXO2	75	82.192	Propithecus_coquereli
ENSXCOG00000018838	smfn	81	76.582	ENSPVAG00000005295	REXO2	66	76.582	Pteropus_vampyrus
ENSXCOG00000018838	smfn	95	82.258	ENSPNYG00000018401	smfn	74	79.793	Pundamilia_nyererei
ENSXCOG00000018838	smfn	94	80.435	ENSPNAG00000005290	smfn	68	80.435	Pygocentrus_nattereri
ENSXCOG00000018838	smfn	94	77.297	ENSRNOG00000018939	Rexo2	93	66.964	Rattus_norvegicus
ENSXCOG00000018838	smfn	85	81.325	ENSRBIG00000037809	REXO2	94	67.111	Rhinopithecus_bieti
ENSXCOG00000018838	smfn	85	81.325	ENSRROG00000038928	REXO2	94	67.111	Rhinopithecus_roxellana
ENSXCOG00000018838	smfn	91	43.316	YLR059C	REX2	86	38.362	Saccharomyces_cerevisiae
ENSXCOG00000018838	smfn	95	77.957	ENSSBOG00000028651	REXO2	95	67.826	Saimiri_boliviensis_boliviensis
ENSXCOG00000018838	smfn	95	77.419	ENSSHAG00000008008	REXO2	86	72.772	Sarcophilus_harrisii
ENSXCOG00000018838	smfn	94	77.838	ENSSFOG00015022414	smfn	98	77.838	Scleropages_formosus
ENSXCOG00000018838	smfn	94	81.622	ENSSMAG00000003168	smfn	69	80.000	Scophthalmus_maximus
ENSXCOG00000018838	smfn	95	83.871	ENSSDUG00000015624	smfn	67	82.199	Seriola_dumerili
ENSXCOG00000018838	smfn	95	83.871	ENSSLDG00000014005	smfn	67	82.199	Seriola_lalandi_dorsalis
ENSXCOG00000018838	smfn	65	85.827	ENSSARG00000014530	REXO2	100	85.827	Sorex_araneus
ENSXCOG00000018838	smfn	81	72.152	ENSSPUG00000006005	REXO2	85	72.152	Sphenodon_punctatus
ENSXCOG00000018838	smfn	93	85.714	ENSSPAG00000001530	smfn	98	85.714	Stegastes_partitus
ENSXCOG00000018838	smfn	95	78.495	ENSSSCG00000015056	REXO2	94	68.000	Sus_scrofa
ENSXCOG00000018838	smfn	95	74.194	ENSTGUG00000000121	REXO2	79	74.731	Taeniopygia_guttata
ENSXCOG00000018838	smfn	94	80.000	ENSTRUG00000021529	smfn	71	77.604	Takifugu_rubripes
ENSXCOG00000018838	smfn	92	81.768	ENSTNIG00000008588	smfn	80	82.222	Tetraodon_nigroviridis
ENSXCOG00000018838	smfn	95	77.957	ENSTBEG00000017040	REXO2	85	73.267	Tupaia_belangeri
ENSXCOG00000018838	smfn	100	73.632	ENSTTRG00000014928	REXO2	85	73.632	Tursiops_truncatus
ENSXCOG00000018838	smfn	99	68.657	ENSUAMG00000019096	REXO2	95	69.474	Ursus_americanus
ENSXCOG00000018838	smfn	95	78.495	ENSUMAG00000003770	REXO2	94	68.444	Ursus_maritimus
ENSXCOG00000018838	smfn	94	60.870	ENSVPAG00000006301	REXO2	98	60.870	Vicugna_pacos
ENSXCOG00000018838	smfn	95	78.495	ENSVVUG00000025223	REXO2	94	68.444	Vulpes_vulpes
ENSXCOG00000018838	smfn	92	77.901	ENSXETG00000012648	rexo2	77	75.132	Xenopus_tropicalis
ENSXCOG00000018838	smfn	95	98.925	ENSXMAG00000021125	smfn	60	98.925	Xiphophorus_maculatus