EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXCOG00000018920 (Gene tree)
Gene ID: -
Gene Symbol: prdm1b
Alias: -
Full Name: PR domain containing 1b%2C with ZNF domain
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Minus strand
Length: 13292 bases
Position: chrKQ557205.1:605208-618499
Accession: ZDB-GENE-080618-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000025338	zf-C2H2	PF00096.26	6.8e-19	1	3
ENSXCOP00000025338	zf-C2H2	PF00096.26	6.8e-19	2	3
ENSXCOP00000025338	zf-C2H2	PF00096.26	6.8e-19	3	3
ENSXCOP00000025341	zf-C2H2	PF00096.26	1.1e-18	1	3
ENSXCOP00000025341	zf-C2H2	PF00096.26	1.1e-18	2	3
ENSXCOP00000025341	zf-C2H2	PF00096.26	1.1e-18	3	3
ENSXCOP00000025345	zf-C2H2	PF00096.26	1.1e-18	1	3
ENSXCOP00000025345	zf-C2H2	PF00096.26	1.1e-18	2	3
ENSXCOP00000025345	zf-C2H2	PF00096.26	1.1e-18	3	3
ENSXCOP00000025338	zf-met	PF12874.7	1.9e-06	1	1
ENSXCOP00000025341	zf-met	PF12874.7	3.6e-06	1	1
ENSXCOP00000025345	zf-met	PF12874.7	3.7e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000025645	-	2058	-	ENSXCOP00000025338	685 (aa)	-	-
ENSXCOT00000025652	-	2286	-	ENSXCOP00000025345	761 (aa)	-	-
ENSXCOT00000025648	-	2265	-	ENSXCOP00000025341	754 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000018920's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000018920's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000018920	prdm1b	98	39.159	ENSAPOG00000014135	-	94	40.263	Acanthochromis_polyacanthus
ENSXCOG00000018920	prdm1b	61	72.182	ENSAPOG00000022084	prdm1b	89	73.571	Acanthochromis_polyacanthus
ENSXCOG00000018920	prdm1b	84	78.778	ENSACIG00000014426	prdm1b	95	78.778	Amphilophus_citrinellus
ENSXCOG00000018920	prdm1b	83	74.740	ENSAOCG00000002230	prdm1b	98	74.523	Amphiprion_ocellaris
ENSXCOG00000018920	prdm1b	98	75.441	ENSAPEG00000019826	prdm1b	97	75.258	Amphiprion_percula
ENSXCOG00000018920	prdm1b	84	79.899	ENSATEG00000006924	prdm1b	95	80.236	Anabas_testudineus
ENSXCOG00000018920	prdm1b	74	55.621	ENSATEG00000021017	prdm1a	70	55.682	Anabas_testudineus
ENSXCOG00000018920	prdm1b	94	38.462	ENSATEG00000014034	-	96	38.462	Anabas_testudineus
ENSXCOG00000018920	prdm1b	82	81.597	ENSACLG00000005487	prdm1b	90	81.597	Astatotilapia_calliptera
ENSXCOG00000018920	prdm1b	75	53.107	ENSCSEG00000009707	prdm1a	92	42.717	Cynoglossus_semilaevis
ENSXCOG00000018920	prdm1b	60	58.015	ENSCVAG00000019081	prdm1a	69	54.857	Cyprinodon_variegatus
ENSXCOG00000018920	prdm1b	98	83.504	ENSCVAG00000016746	prdm1b	96	83.796	Cyprinodon_variegatus
ENSXCOG00000018920	prdm1b	84	86.059	ENSFHEG00000019848	prdm1b	95	86.059	Fundulus_heteroclitus
ENSXCOG00000018920	prdm1b	97	93.297	ENSGAFG00000016191	prdm1b	98	93.297	Gambusia_affinis
ENSXCOG00000018920	prdm1b	60	54.601	ENSGAFG00000013012	-	56	54.601	Gambusia_affinis
ENSXCOG00000018920	prdm1b	95	70.141	ENSGACG00000002716	prdm1b	100	70.282	Gasterosteus_aculeatus
ENSXCOG00000018920	prdm1b	82	82.168	ENSHBUG00000001475	prdm1b	95	82.168	Haplochromis_burtoni
ENSXCOG00000018920	prdm1b	84	72.466	ENSHCOG00000003617	prdm1b	95	72.466	Hippocampus_comes
ENSXCOG00000018920	prdm1b	92	64.677	ENSIPUG00000013740	prdm1b	94	56.891	Ictalurus_punctatus
ENSXCOG00000018920	prdm1b	81	75.355	ENSKMAG00000011218	prdm1b	90	75.355	Kryptolebias_marmoratus
ENSXCOG00000018920	prdm1b	91	40.517	ENSKMAG00000016247	-	87	40.517	Kryptolebias_marmoratus
ENSXCOG00000018920	prdm1b	61	56.180	ENSKMAG00000017597	prdm1a	95	41.833	Kryptolebias_marmoratus
ENSXCOG00000018920	prdm1b	98	80.087	ENSLBEG00000020955	prdm1b	96	80.087	Labrus_bergylta
ENSXCOG00000018920	prdm1b	81	76.190	ENSLOCG00000004978	prdm1b	78	75.904	Lepisosteus_oculatus
ENSXCOG00000018920	prdm1b	84	79.966	ENSMZEG00005026361	prdm1b	90	79.966	Maylandia_zebra
ENSXCOG00000018920	prdm1b	82	79.514	ENSMMOG00000013458	prdm1b	95	79.514	Mola_mola
ENSXCOG00000018920	prdm1b	85	74.338	ENSMALG00000011410	prdm1b	99	74.503	Monopterus_albus
ENSXCOG00000018920	prdm1b	88	40.000	ENSMALG00000000462	-	92	40.000	Monopterus_albus
ENSXCOG00000018920	prdm1b	52	61.165	ENSONIG00000014709	-	59	55.215	Oreochromis_niloticus
ENSXCOG00000018920	prdm1b	94	85.475	ENSONIG00000013583	prdm1b	92	85.475	Oreochromis_niloticus
ENSXCOG00000018920	prdm1b	82	70.370	ENSORLG00000010025	prdm1b	96	70.370	Oryzias_latipes
ENSXCOG00000018920	prdm1b	80	69.610	ENSORLG00015009022	prdm1b	92	70.326	Oryzias_latipes_hsok
ENSXCOG00000018920	prdm1b	78	74.214	ENSPKIG00000022335	prdm1b	97	51.015	Paramormyrops_kingsleyae
ENSXCOG00000018920	prdm1b	90	82.226	ENSPFOG00000003103	prdm1b	100	85.628	Poecilia_formosa
ENSXCOG00000018920	prdm1b	84	91.275	ENSPLAG00000018491	prdm1b	95	91.275	Poecilia_latipinna
ENSXCOG00000018920	prdm1b	84	91.993	ENSPMEG00000007869	prdm1b	95	91.993	Poecilia_mexicana
ENSXCOG00000018920	prdm1b	96	91.792	ENSPREG00000011327	prdm1b	97	91.553	Poecilia_reticulata
ENSXCOG00000018920	prdm1b	94	42.933	ENSPVAG00000011732	PRDM1	93	42.933	Pteropus_vampyrus
ENSXCOG00000018920	prdm1b	93	43.546	ENSPNAG00000028442	prdm1a	89	43.154	Pygocentrus_nattereri
ENSXCOG00000018920	prdm1b	94	62.751	ENSSFOG00015021896	prdm1b	92	62.751	Scleropages_formosus
ENSXCOG00000018920	prdm1b	94	39.945	ENSSMAG00000017518	-	90	39.945	Scophthalmus_maximus
ENSXCOG00000018920	prdm1b	98	78.179	ENSSMAG00000020467	prdm1b	96	78.324	Scophthalmus_maximus
ENSXCOG00000018920	prdm1b	84	81.008	ENSSDUG00000020610	prdm1b	95	81.008	Seriola_dumerili
ENSXCOG00000018920	prdm1b	62	55.952	ENSSDUG00000000524	-	55	54.494	Seriola_dumerili
ENSXCOG00000018920	prdm1b	62	55.357	ENSSLDG00000001957	-	55	54.307	Seriola_lalandi_dorsalis
ENSXCOG00000018920	prdm1b	98	82.225	ENSSLDG00000021973	prdm1b	96	82.225	Seriola_lalandi_dorsalis
ENSXCOG00000018920	prdm1b	82	80.903	ENSSPAG00000000803	prdm1b	95	80.690	Stegastes_partitus
ENSXCOG00000018920	prdm1b	93	40.483	ENSSPAG00000009830	-	93	40.483	Stegastes_partitus
ENSXCOG00000018920	prdm1b	100	99.606	ENSXMAG00000016765	prdm1b	100	99.606	Xiphophorus_maculatus