EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000019172 (Gene tree)
Gene ID: -
Gene Symbol: vars
Alias: CHUNP6879|im:7137378|vars2|wu:fb07a11|wu:fb07d10
Full Name: valyl-tRNA synthetase
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Minus strand
Length: 19682 bases
Position: chrKQ557218.1:10151225-10170906
Accession: ZDB-GENE-010601-1
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000025669	tRNA-synt_1g	PF09334.11	3.9e-13	1	1
ENSXCOP00000025669	Anticodon_1	PF08264.13	1.7e-36	1	1
ENSXCOP00000025669	tRNA-synt_1	PF00133.22	3.9e-205	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000025978	-	3714	-	ENSXCOP00000025669	1237 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000019172's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000019172's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000019172	vars	78	49.488	ENSXCOG00000003455	vars2	98	48.019

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000019172	vars	100	65.512	ENSG00000204394	VARS	99	72.393	Homo_sapiens
ENSXCOG00000019172	vars	98	86.168	ENSAPOG00000020691	vars	99	86.086	Acanthochromis_polyacanthus
ENSXCOG00000019172	vars	98	86.168	ENSAPOG00000020921	vars	99	86.086	Acanthochromis_polyacanthus
ENSXCOG00000019172	vars	100	65.303	ENSAMEG00000006417	VARS	100	65.303	Ailuropoda_melanoleuca
ENSXCOG00000019172	vars	100	90.032	ENSACIG00000013752	vars	100	90.032	Amphilophus_citrinellus
ENSXCOG00000019172	vars	100	88.688	ENSAOCG00000002447	vars	100	88.010	Amphiprion_ocellaris
ENSXCOG00000019172	vars	100	88.531	ENSAPEG00000010638	vars	99	88.531	Amphiprion_percula
ENSXCOG00000019172	vars	100	85.578	ENSATEG00000020219	vars	100	85.259	Anabas_testudineus
ENSXCOG00000019172	vars	89	71.615	ENSACAG00000029133	-	99	71.528	Anolis_carolinensis
ENSXCOG00000019172	vars	100	65.512	ENSANAG00000015453	VARS	100	65.512	Aotus_nancymaae
ENSXCOG00000019172	vars	100	88.636	ENSACLG00000025699	vars	97	88.636	Astatotilapia_calliptera
ENSXCOG00000019172	vars	96	80.350	ENSAMXG00000017716	vars	96	80.350	Astyanax_mexicanus
ENSXCOG00000019172	vars	100	65.827	ENSBTAG00000005631	VARS	100	65.669	Bos_taurus
ENSXCOG00000019172	vars	100	65.276	ENSCJAG00000002604	VARS	100	65.276	Callithrix_jacchus
ENSXCOG00000019172	vars	100	65.039	ENSCAFG00000000636	VARS	100	65.039	Canis_familiaris
ENSXCOG00000019172	vars	94	66.471	ENSCAFG00020020790	VARS	96	66.471	Canis_lupus_dingo
ENSXCOG00000019172	vars	100	65.748	ENSCHIG00000011008	VARS	100	65.591	Capra_hircus
ENSXCOG00000019172	vars	100	65.354	ENSTSYG00000001567	VARS	100	65.354	Carlito_syrichta
ENSXCOG00000019172	vars	91	68.706	ENSCAPG00000013736	VARS	98	68.389	Cavia_aperea
ENSXCOG00000019172	vars	100	65.173	ENSCPOG00000000870	VARS	100	64.882	Cavia_porcellus
ENSXCOG00000019172	vars	100	65.669	ENSCCAG00000035656	VARS	100	65.512	Cebus_capucinus
ENSXCOG00000019172	vars	100	65.881	ENSCATG00000022394	VARS	100	65.748	Cercocebus_atys
ENSXCOG00000019172	vars	90	66.724	ENSCLAG00000009470	VARS	92	66.407	Chinchilla_lanigera
ENSXCOG00000019172	vars	100	65.566	ENSCSAG00000008784	VARS	100	65.591	Chlorocebus_sabaeus
ENSXCOG00000019172	vars	79	74.618	ENSCPBG00000007943	VARS	96	74.618	Chrysemys_picta_bellii
ENSXCOG00000019172	vars	100	65.645	ENSCANG00000033570	VARS	100	65.669	Colobus_angolensis_palliatus
ENSXCOG00000019172	vars	100	65.354	ENSCGRG00001005686	Vars	100	65.433	Cricetulus_griseus_chok1gshd
ENSXCOG00000019172	vars	93	63.417	ENSCGRG00000013352	Vars	78	63.500	Cricetulus_griseus_crigri
ENSXCOG00000019172	vars	100	82.816	ENSCSEG00000019652	vars	100	82.578	Cynoglossus_semilaevis
ENSXCOG00000019172	vars	100	92.320	ENSCVAG00000022398	vars	100	92.320	Cyprinodon_variegatus
ENSXCOG00000019172	vars	100	82.537	ENSDARG00000044575	vars	100	82.537	Danio_rerio
ENSXCOG00000019172	vars	85	70.594	ENSDORG00000016433	Vars	94	70.688	Dipodomys_ordii
ENSXCOG00000019172	vars	69	73.599	ENSETEG00000003824	VARS	77	73.599	Echinops_telfairi
ENSXCOG00000019172	vars	53	71.826	ENSEBUG00000007086	vars	83	71.826	Eptatretus_burgeri
ENSXCOG00000019172	vars	59	64.843	ENSEBUG00000004637	vars	100	64.843	Eptatretus_burgeri
ENSXCOG00000019172	vars	100	65.906	ENSEASG00005015673	VARS	100	65.906	Equus_asinus_asinus
ENSXCOG00000019172	vars	100	65.854	ENSECAG00000014620	VARS	100	66.090	Equus_caballus
ENSXCOG00000019172	vars	72	71.178	ENSEEUG00000004116	VARS	83	71.178	Erinaceus_europaeus
ENSXCOG00000019172	vars	100	81.669	ENSELUG00000006550	vars	97	81.435	Esox_lucius
ENSXCOG00000019172	vars	100	65.512	ENSFCAG00000004510	VARS	100	65.669	Felis_catus
ENSXCOG00000019172	vars	83	70.884	ENSFDAG00000011401	VARS	100	70.695	Fukomys_damarensis
ENSXCOG00000019172	vars	100	90.596	ENSFHEG00000010672	vars	100	90.596	Fundulus_heteroclitus
ENSXCOG00000019172	vars	100	79.283	ENSGMOG00000014908	vars	100	79.283	Gadus_morhua
ENSXCOG00000019172	vars	100	95.369	ENSGAFG00000021630	vars	100	95.369	Gambusia_affinis
ENSXCOG00000019172	vars	93	86.146	ENSGACG00000009601	vars	100	82.238	Gasterosteus_aculeatus
ENSXCOG00000019172	vars	100	65.906	ENSGGOG00000011364	VARS	100	65.906	Gorilla_gorilla
ENSXCOG00000019172	vars	100	88.715	ENSHBUG00000017151	vars	97	88.715	Haplochromis_burtoni
ENSXCOG00000019172	vars	100	64.933	ENSHGLG00000011646	VARS	100	64.933	Heterocephalus_glaber_female
ENSXCOG00000019172	vars	93	61.245	ENSHGLG00100018062	VARS	99	61.079	Heterocephalus_glaber_male
ENSXCOG00000019172	vars	99	83.034	ENSHCOG00000012198	vars	99	83.034	Hippocampus_comes
ENSXCOG00000019172	vars	100	81.441	ENSIPUG00000005218	vars	100	81.519	Ictalurus_punctatus
ENSXCOG00000019172	vars	100	65.696	ENSSTOG00000013112	VARS	100	65.618	Ictidomys_tridecemlineatus
ENSXCOG00000019172	vars	100	53.402	ENSJJAG00000015343	-	99	54.894	Jaculus_jaculus
ENSXCOG00000019172	vars	100	65.460	ENSJJAG00000019749	-	100	65.142	Jaculus_jaculus
ENSXCOG00000019172	vars	100	87.322	ENSKMAG00000009455	vars	100	87.322	Kryptolebias_marmoratus
ENSXCOG00000019172	vars	100	85.304	ENSLBEG00000010341	vars	100	85.304	Labrus_bergylta
ENSXCOG00000019172	vars	94	65.876	ENSLACG00000015232	VARS	99	66.149	Latimeria_chalumnae
ENSXCOG00000019172	vars	100	74.313	ENSLOCG00000004240	vars	100	74.077	Lepisosteus_oculatus
ENSXCOG00000019172	vars	100	65.406	ENSLAFG00000023090	VARS	100	65.406	Loxodonta_africana
ENSXCOG00000019172	vars	100	65.723	ENSMFAG00000001032	VARS	100	65.591	Macaca_fascicularis
ENSXCOG00000019172	vars	100	65.723	ENSMMUG00000006828	VARS	100	65.591	Macaca_mulatta
ENSXCOG00000019172	vars	100	65.723	ENSMNEG00000042072	VARS	100	65.748	Macaca_nemestrina
ENSXCOG00000019172	vars	100	65.802	ENSMLEG00000039307	VARS	100	65.827	Mandrillus_leucophaeus
ENSXCOG00000019172	vars	100	87.018	ENSMAMG00000003949	vars	100	87.018	Mastacembelus_armatus
ENSXCOG00000019172	vars	100	88.715	ENSMZEG00005018327	vars	97	88.715	Maylandia_zebra
ENSXCOG00000019172	vars	100	65.197	ENSMAUG00000006715	Vars	100	65.276	Mesocricetus_auratus
ENSXCOG00000019172	vars	100	65.907	ENSMICG00000003548	VARS	100	65.827	Microcebus_murinus
ENSXCOG00000019172	vars	100	65.124	ENSMOCG00000015404	Vars	100	65.124	Microtus_ochrogaster
ENSXCOG00000019172	vars	100	85.306	ENSMMOG00000015801	vars	100	85.226	Mola_mola
ENSXCOG00000019172	vars	100	65.748	ENSMODG00000015204	-	100	65.669	Monodelphis_domestica
ENSXCOG00000019172	vars	99	87.314	ENSMALG00000022532	vars	99	87.314	Monopterus_albus
ENSXCOG00000019172	vars	100	66.036	MGP_CAROLIEiJ_G0021491	Vars	100	66.036	Mus_caroli
ENSXCOG00000019172	vars	100	65.800	ENSMUSG00000007029	Vars	100	65.800	Mus_musculus
ENSXCOG00000019172	vars	100	65.800	MGP_PahariEiJ_G0020486	Vars	100	65.800	Mus_pahari
ENSXCOG00000019172	vars	100	65.879	MGP_SPRETEiJ_G0022396	Vars	100	65.879	Mus_spretus
ENSXCOG00000019172	vars	100	65.276	ENSMPUG00000010821	VARS	100	65.276	Mustela_putorius_furo
ENSXCOG00000019172	vars	77	68.725	ENSMLUG00000013126	VARS	100	68.725	Myotis_lucifugus
ENSXCOG00000019172	vars	100	65.248	ENSNGAG00000012151	Vars	100	65.248	Nannospalax_galili
ENSXCOG00000019172	vars	100	88.401	ENSNBRG00000020520	vars	100	88.401	Neolamprologus_brichardi
ENSXCOG00000019172	vars	100	65.591	ENSNLEG00000006351	VARS	100	65.591	Nomascus_leucogenys
ENSXCOG00000019172	vars	100	64.173	ENSMEUG00000011378	VARS	100	64.252	Notamacropus_eugenii
ENSXCOG00000019172	vars	100	65.433	ENSOPRG00000003607	VARS	100	65.512	Ochotona_princeps
ENSXCOG00000019172	vars	100	64.471	ENSODEG00000017681	VARS	100	64.471	Octodon_degus
ENSXCOG00000019172	vars	100	89.345	ENSONIG00000013064	vars	100	89.983	Oreochromis_niloticus
ENSXCOG00000019172	vars	77	67.587	ENSOANG00000005400	VARS	98	67.587	Ornithorhynchus_anatinus
ENSXCOG00000019172	vars	100	64.038	ENSOCUG00000022463	VARS	100	63.693	Oryctolagus_cuniculus
ENSXCOG00000019172	vars	100	86.325	ENSORLG00000013063	vars	100	86.325	Oryzias_latipes
ENSXCOG00000019172	vars	100	86.865	ENSORLG00020003504	vars	100	86.787	Oryzias_latipes_hni
ENSXCOG00000019172	vars	100	87.011	ENSORLG00015009001	vars	100	86.933	Oryzias_latipes_hsok
ENSXCOG00000019172	vars	100	87.402	ENSOMEG00000015016	vars	100	87.402	Oryzias_melastigma
ENSXCOG00000019172	vars	100	65.433	ENSOGAG00000007515	VARS	100	65.433	Otolemur_garnettii
ENSXCOG00000019172	vars	100	65.512	ENSPPAG00000034012	VARS	100	65.512	Pan_paniscus
ENSXCOG00000019172	vars	100	65.512	ENSPPRG00000014855	VARS	100	65.669	Panthera_pardus
ENSXCOG00000019172	vars	85	69.815	ENSPTIG00000010462	VARS	93	70.000	Panthera_tigris_altaica
ENSXCOG00000019172	vars	100	65.512	ENSPTRG00000017985	VARS	100	65.512	Pan_troglodytes
ENSXCOG00000019172	vars	100	64.241	ENSPANG00000014565	VARS	100	64.263	Papio_anubis
ENSXCOG00000019172	vars	100	78.444	ENSPKIG00000016304	vars	100	78.444	Paramormyrops_kingsleyae
ENSXCOG00000019172	vars	100	84.505	ENSPMGG00000023909	vars	100	84.265	Periophthalmus_magnuspinnatus
ENSXCOG00000019172	vars	100	65.487	ENSPEMG00000006639	Vars	100	65.566	Peromyscus_maniculatus_bairdii
ENSXCOG00000019172	vars	100	65.354	ENSPCIG00000018553	VARS	100	65.276	Phascolarctos_cinereus
ENSXCOG00000019172	vars	100	94.270	ENSPFOG00000015690	vars	100	94.270	Poecilia_formosa
ENSXCOG00000019172	vars	100	95.326	ENSPLAG00000009590	vars	100	95.326	Poecilia_latipinna
ENSXCOG00000019172	vars	100	94.270	ENSPMEG00000004708	vars	100	94.270	Poecilia_mexicana
ENSXCOG00000019172	vars	100	91.134	ENSPREG00000013264	vars	100	91.134	Poecilia_reticulata
ENSXCOG00000019172	vars	100	63.808	ENSPPYG00000016460	VARS	100	64.173	Pongo_abelii
ENSXCOG00000019172	vars	86	66.252	ENSPCAG00000013565	VARS	86	66.252	Procavia_capensis
ENSXCOG00000019172	vars	100	65.618	ENSPCOG00000010942	VARS	100	65.854	Propithecus_coquereli
ENSXCOG00000019172	vars	100	63.286	ENSPVAG00000012403	VARS	100	63.543	Pteropus_vampyrus
ENSXCOG00000019172	vars	100	88.793	ENSPNYG00000022511	vars	100	88.793	Pundamilia_nyererei
ENSXCOG00000019172	vars	100	82.123	ENSPNAG00000020962	vars	100	82.358	Pygocentrus_nattereri
ENSXCOG00000019172	vars	100	65.512	ENSRNOG00000000867	Vars	100	65.354	Rattus_norvegicus
ENSXCOG00000019172	vars	100	65.645	ENSRBIG00000041669	VARS	100	65.669	Rhinopithecus_bieti
ENSXCOG00000019172	vars	100	65.645	ENSRROG00000045490	VARS	100	65.669	Rhinopithecus_roxellana
ENSXCOG00000019172	vars	100	65.197	ENSSBOG00000035402	VARS	100	65.197	Saimiri_boliviensis_boliviensis
ENSXCOG00000019172	vars	100	64.926	ENSSHAG00000006937	VARS	100	65.082	Sarcophilus_harrisii
ENSXCOG00000019172	vars	100	78.488	ENSSFOG00015014272	vars	100	78.488	Scleropages_formosus
ENSXCOG00000019172	vars	100	85.759	ENSSMAG00000009596	vars	99	85.759	Scophthalmus_maximus
ENSXCOG00000019172	vars	100	88.106	ENSSDUG00000014177	vars	100	88.185	Seriola_dumerili
ENSXCOG00000019172	vars	100	87.872	ENSSLDG00000025316	vars	100	87.950	Seriola_lalandi_dorsalis
ENSXCOG00000019172	vars	100	87.981	ENSSPAG00000017068	vars	100	87.981	Stegastes_partitus
ENSXCOG00000019172	vars	100	65.146	ENSSSCG00000038950	VARS	100	65.382	Sus_scrofa
ENSXCOG00000019172	vars	82	80.426	ENSTRUG00000012307	vars	98	80.271	Takifugu_rubripes
ENSXCOG00000019172	vars	100	85.127	ENSTNIG00000008011	vars	100	85.127	Tetraodon_nigroviridis
ENSXCOG00000019172	vars	100	59.732	ENSTTRG00000014128	VARS	100	59.732	Tursiops_truncatus
ENSXCOG00000019172	vars	100	63.105	ENSUAMG00000010424	VARS	100	63.162	Ursus_americanus
ENSXCOG00000019172	vars	100	59.906	ENSUMAG00000013486	VARS	100	59.672	Ursus_maritimus
ENSXCOG00000019172	vars	100	65.409	ENSVVUG00000021323	VARS	100	65.146	Vulpes_vulpes
ENSXCOG00000019172	vars	100	64.914	ENSXETG00000024076	vars	100	64.632	Xenopus_tropicalis
ENSXCOG00000019172	vars	100	96.075	ENSXMAG00000010927	vars	100	96.075	Xiphophorus_maculatus