EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSXCOG00000019460 (Gene tree)
Gene ID
-
Gene Symbol
cnot3a
Alias
fb73b06|fc17h07|wu:fb73b06|wu:fc17h07|zgc:92813
Full Name
CCR4-NOT transcription complex%2C subunit 3a
Gene Type
protein_coding
Species
Xiphophorus_couchianus
Status
putative
Strand
Minus strand
Length
12283 bases
Position
chrKQ557218.1:12173877-12186159
Accession
ZDB-GENE-040927-6
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSXCOP00000026056Not3PF04065.154.4e-9711
ENSXCOP00000026053Not3PF04065.157.6e-9711
ENSXCOP00000026051Not3PF04065.157e-9511
ENSXCOP00000026058Not3PF04065.151.1e-9211
ENSXCOP00000026056NOT2_3_5PF04153.186.8e-3911
ENSXCOP00000026053NOT2_3_5PF04153.182.8e-3811
ENSXCOP00000026051NOT2_3_5PF04153.184.3e-3711
ENSXCOP00000026058NOT2_3_5PF04153.189.6e-2511
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSXCOT00000026364-2547-ENSXCOP00000026051848 (aa)--
ENSXCOT00000026366-2487-ENSXCOP00000026053828 (aa)--
ENSXCOT00000026369-1779-ENSXCOP00000026056592 (aa)--
ENSXCOT00000026371-2562-ENSXCOP00000026058854 (aa)--
Gene Model
Click here to download ENSXCOG00000019460's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000019460's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSXCOG00000019460cnot3a7991.441ENSXCOG00000018976cnot3b7189.316
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSXCOG00000019460cnot3a8593.162ENSG00000088038CNOT310094.330Homo_sapiens
ENSXCOG00000019460cnot3a7593.780ENSAPOG00000015002cnot3b7688.768Acanthochromis_polyacanthus
ENSXCOG00000019460cnot3a10071.100ENSAPOG00000015499CNOT39287.189Acanthochromis_polyacanthus
ENSXCOG00000019460cnot3a8393.590ENSAMEG00000004528CNOT37687.582Ailuropoda_melanoleuca
ENSXCOG00000019460cnot3a9972.222ENSACIG00000003652cnot3b9987.137Amphilophus_citrinellus
ENSXCOG00000019460cnot3a9798.729ENSACIG00000006635cnot3a10099.145Amphilophus_citrinellus
ENSXCOG00000019460cnot3a9278.469ENSAOCG00000018385-10068.473Amphiprion_ocellaris
ENSXCOG00000019460cnot3a9799.145ENSAOCG00000023769cnot3a9785.177Amphiprion_ocellaris
ENSXCOG00000019460cnot3a9193.810ENSAPEG00000002640cnot3b9693.810Amphiprion_percula
ENSXCOG00000019460cnot3a9999.145ENSAPEG00000006624cnot3a9884.554Amphiprion_percula
ENSXCOG00000019460cnot3a9798.718ENSATEG00000022737cnot3a10081.469Anabas_testudineus
ENSXCOG00000019460cnot3a10063.359ENSATEG00000015777cnot3b7180.412Anabas_testudineus
ENSXCOG00000019460cnot3a8793.162ENSACAG00000016085CNOT39288.599Anolis_carolinensis
ENSXCOG00000019460cnot3a9893.162ENSANAG00000025756CNOT37887.255Aotus_nancymaae
ENSXCOG00000019460cnot3a9799.145ENSACLG00000021136cnot3a9492.793Astatotilapia_calliptera
ENSXCOG00000019460cnot3a9795.726ENSACLG00000016702cnot3b8990.228Astatotilapia_calliptera
ENSXCOG00000019460cnot3a9694.643ENSAMXG00000009447cnot3b9988.649Astyanax_mexicanus
ENSXCOG00000019460cnot3a9797.009ENSAMXG00000012359cnot3a9488.128Astyanax_mexicanus
ENSXCOG00000019460cnot3a9893.162ENSBTAG00000014900CNOT37687.255Bos_taurus
ENSXCOG00000019460cnot3a8252.604WBGene00003826ntl-39752.604Caenorhabditis_elegans
ENSXCOG00000019460cnot3a9893.162ENSCJAG00000001094CNOT37587.255Callithrix_jacchus
ENSXCOG00000019460cnot3a8393.162ENSCAFG00000002699CNOT37587.255Canis_familiaris
ENSXCOG00000019460cnot3a8393.162ENSCAFG00020018359CNOT37587.255Canis_lupus_dingo
ENSXCOG00000019460cnot3a9890.558ENSCHIG00000015302CNOT37785.762Capra_hircus
ENSXCOG00000019460cnot3a9893.162ENSTSYG00000008058CNOT37687.255Carlito_syrichta
ENSXCOG00000019460cnot3a10062.344ENSCAPG00000009533CNOT37587.255Cavia_aperea
ENSXCOG00000019460cnot3a7686.218ENSCPOG00000020741CNOT38179.514Cavia_porcellus
ENSXCOG00000019460cnot3a9893.162ENSCCAG00000036290CNOT37987.255Cebus_capucinus
ENSXCOG00000019460cnot3a8593.162ENSCATG00000030324CNOT37587.255Cercocebus_atys
ENSXCOG00000019460cnot3a7686.218ENSCLAG00000003302CNOT310085.366Chinchilla_lanigera
ENSXCOG00000019460cnot3a8593.162ENSCSAG00000001900CNOT37587.255Chlorocebus_sabaeus
ENSXCOG00000019460cnot3a9493.162ENSCPBG00000011655CNOT37789.370Chrysemys_picta_bellii
ENSXCOG00000019460cnot3a9169.957ENSCING00000000293-6969.957Ciona_intestinalis
ENSXCOG00000019460cnot3a8593.162ENSCANG00000013408CNOT37587.255Colobus_angolensis_palliatus
ENSXCOG00000019460cnot3a9877.731ENSCGRG00001000855Cnot38487.582Cricetulus_griseus_chok1gshd
ENSXCOG00000019460cnot3a7169.302ENSCGRG00000012929Cnot39248.877Cricetulus_griseus_crigri
ENSXCOG00000019460cnot3a9697.863ENSCSEG00000003574cnot3a10079.676Cynoglossus_semilaevis
ENSXCOG00000019460cnot3a9990.558ENSCSEG00000016892cnot3b7081.517Cynoglossus_semilaevis
ENSXCOG00000019460cnot3a9895.142ENSCVAG00000008168cnot3a10085.430Cyprinodon_variegatus
ENSXCOG00000019460cnot3a8293.243ENSCVAG00000022122cnot3b10061.464Cyprinodon_variegatus
ENSXCOG00000019460cnot3a9987.387ENSDARG00000007135cnot3a9387.387Danio_rerio
ENSXCOG00000019460cnot3a9193.590ENSDARG00000019842cnot3b10063.787Danio_rerio
ENSXCOG00000019460cnot3a8592.735ENSDNOG00000045972CNOT38586.928Dasypus_novemcinctus
ENSXCOG00000019460cnot3a8893.162ENSDORG00000008021Cnot310080.460Dipodomys_ordii
ENSXCOG00000019460cnot3a7667.630FBgn0033029Not35567.630Drosophila_melanogaster
ENSXCOG00000019460cnot3a69100.000ENSETEG00000006305CNOT363100.000Echinops_telfairi
ENSXCOG00000019460cnot3a8773.282ENSEBUG00000010437cnot3a7169.583Eptatretus_burgeri
ENSXCOG00000019460cnot3a9893.162ENSEASG00005021591CNOT37587.255Equus_asinus_asinus
ENSXCOG00000019460cnot3a9893.162ENSECAG00000023181CNOT37587.255Equus_caballus
ENSXCOG00000019460cnot3a9492.735ENSELUG00000000953cnot3b7179.110Esox_lucius
ENSXCOG00000019460cnot3a9794.915ENSELUG00000014743cnot3a9092.237Esox_lucius
ENSXCOG00000019460cnot3a10071.218ENSFCAG00000014042CNOT37687.255Felis_catus
ENSXCOG00000019460cnot3a9699.145ENSFHEG00000023166cnot3a9895.161Fundulus_heteroclitus
ENSXCOG00000019460cnot3a8293.243ENSFHEG00000001696cnot3b9761.154Fundulus_heteroclitus
ENSXCOG00000019460cnot3a8988.158ENSGMOG00000005365cnot3a9484.571Gadus_morhua
ENSXCOG00000019460cnot3a7891.441ENSGAFG00000003459cnot3b10061.070Gambusia_affinis
ENSXCOG00000019460cnot3a10096.893ENSGAFG00000013094cnot3a9696.893Gambusia_affinis
ENSXCOG00000019460cnot3a5657.582ENSGACG00000009395cnot3b5182.836Gasterosteus_aculeatus
ENSXCOG00000019460cnot3a9088.136ENSGACG00000011489cnot3a9877.687Gasterosteus_aculeatus
ENSXCOG00000019460cnot3a9962.378ENSGAGG00000012677CNOT37583.168Gopherus_agassizii
ENSXCOG00000019460cnot3a8593.162ENSGGOG00000012996CNOT37987.255Gorilla_gorilla
ENSXCOG00000019460cnot3a7094.554ENSHBUG00000019699cnot3b8878.146Haplochromis_burtoni
ENSXCOG00000019460cnot3a9799.145ENSHBUG00000005275cnot3a10081.838Haplochromis_burtoni
ENSXCOG00000019460cnot3a8793.162ENSHGLG00000008821CNOT310080.460Heterocephalus_glaber_female
ENSXCOG00000019460cnot3a8783.846ENSHGLG00100006181CNOT310080.460Heterocephalus_glaber_male
ENSXCOG00000019460cnot3a9599.145ENSHCOG00000020968cnot3a10077.656Hippocampus_comes
ENSXCOG00000019460cnot3a9894.915ENSIPUG00000009046cnot3b10061.008Ictalurus_punctatus
ENSXCOG00000019460cnot3a9994.872ENSIPUG00000000167cnot37881.661Ictalurus_punctatus
ENSXCOG00000019460cnot3a9993.162ENSSTOG00000028248CNOT38587.255Ictidomys_tridecemlineatus
ENSXCOG00000019460cnot3a8293.590ENSJJAG00000014594Cnot310080.460Jaculus_jaculus
ENSXCOG00000019460cnot3a9999.145ENSKMAG00000004863cnot3a10090.761Kryptolebias_marmoratus
ENSXCOG00000019460cnot3a10063.077ENSKMAG00000018723cnot3b10062.756Kryptolebias_marmoratus
ENSXCOG00000019460cnot3a8994.718ENSLBEG00000017296cnot3a9591.364Labrus_bergylta
ENSXCOG00000019460cnot3a9585.824ENSLBEG00000018278cnot3b9384.783Labrus_bergylta
ENSXCOG00000019460cnot3a8391.880ENSLACG00000009742CNOT37585.714Latimeria_chalumnae
ENSXCOG00000019460cnot3a7194.872ENSLOCG00000000005cnot3b8591.339Lepisosteus_oculatus
ENSXCOG00000019460cnot3a9892.340ENSLAFG00000022133CNOT38178.351Loxodonta_africana
ENSXCOG00000019460cnot3a10071.218ENSMFAG00000040073CNOT37587.255Macaca_fascicularis
ENSXCOG00000019460cnot3a8592.797ENSMMUG00000009698CNOT310096.078Macaca_mulatta
ENSXCOG00000019460cnot3a8593.162ENSMNEG00000036750CNOT37587.255Macaca_nemestrina
ENSXCOG00000019460cnot3a8593.162ENSMLEG00000036579CNOT37587.255Mandrillus_leucophaeus
ENSXCOG00000019460cnot3a10062.500ENSMAMG00000019357cnot3b7180.069Mastacembelus_armatus
ENSXCOG00000019460cnot3a9998.718ENSMAMG00000019397cnot3a10081.182Mastacembelus_armatus
ENSXCOG00000019460cnot3a9799.145ENSMZEG00005016304cnot3a9492.793Maylandia_zebra
ENSXCOG00000019460cnot3a9795.726ENSMZEG00005002466cnot3b8990.228Maylandia_zebra
ENSXCOG00000019460cnot3a10062.162ENSMAUG00000014996Cnot38587.582Mesocricetus_auratus
ENSXCOG00000019460cnot3a8593.162ENSMICG00000002370CNOT37587.255Microcebus_murinus
ENSXCOG00000019460cnot3a66100.000ENSMOCG00000013249Cnot363100.000Microtus_ochrogaster
ENSXCOG00000019460cnot3a10070.767ENSMMOG00000013086cnot3b9386.122Mola_mola
ENSXCOG00000019460cnot3a9791.453ENSMMOG00000016446cnot3a10081.416Mola_mola
ENSXCOG00000019460cnot3a7993.162ENSMODG00000004066CNOT36888.274Monodelphis_domestica
ENSXCOG00000019460cnot3a9997.863ENSMALG00000009204cnot3a10079.978Monopterus_albus
ENSXCOG00000019460cnot3a7889.474ENSMALG00000004936cnot3b9585.763Monopterus_albus
ENSXCOG00000019460cnot3a10061.125MGP_CAROLIEiJ_G0029095Cnot310098.000Mus_caroli
ENSXCOG00000019460cnot3a10061.125ENSMUSG00000035632Cnot310098.000Mus_musculus
ENSXCOG00000019460cnot3a10061.671MGP_PahariEiJ_G0020964Cnot310098.000Mus_pahari
ENSXCOG00000019460cnot3a10061.125MGP_SPRETEiJ_G0030148Cnot310098.000Mus_spretus
ENSXCOG00000019460cnot3a8393.162ENSMPUG00000010352CNOT37587.255Mustela_putorius_furo
ENSXCOG00000019460cnot3a7993.162ENSNGAG00000013266Cnot38179.514Nannospalax_galili
ENSXCOG00000019460cnot3a9799.145ENSNBRG00000002401cnot3a10079.759Neolamprologus_brichardi
ENSXCOG00000019460cnot3a9689.823ENSNBRG00000003336cnot3b9786.920Neolamprologus_brichardi
ENSXCOG00000019460cnot3a8593.162ENSNLEG00000006272CNOT37487.255Nomascus_leucogenys
ENSXCOG00000019460cnot3a52100.000ENSMEUG00000002952CNOT357100.000Notamacropus_eugenii
ENSXCOG00000019460cnot3a63100.000ENSOPRG00000001605-63100.000Ochotona_princeps
ENSXCOG00000019460cnot3a7685.897ENSODEG00000000705CNOT310088.608Octodon_degus
ENSXCOG00000019460cnot3a9799.145ENSONIG00000006568cnot3a10080.459Oreochromis_niloticus
ENSXCOG00000019460cnot3a8095.299ENSONIG00000007047cnot3b7281.443Oreochromis_niloticus
ENSXCOG00000019460cnot3a8393.162ENSOCUG00000007691CNOT37687.255Oryctolagus_cuniculus
ENSXCOG00000019460cnot3a9598.718ENSORLG00000011174cnot3a10081.057Oryzias_latipes
ENSXCOG00000019460cnot3a9694.690ENSORLG00020005779cnot3b10065.137Oryzias_latipes_hni
ENSXCOG00000019460cnot3a9598.718ENSORLG00020008009cnot3a10080.000Oryzias_latipes_hni
ENSXCOG00000019460cnot3a9998.718ENSORLG00015013729cnot3a10080.926Oryzias_latipes_hsok
ENSXCOG00000019460cnot3a9598.718ENSOMEG00000010309cnot3a9695.053Oryzias_melastigma
ENSXCOG00000019460cnot3a9694.690ENSOMEG00000015557cnot3b10064.764Oryzias_melastigma
ENSXCOG00000019460cnot3a10071.218ENSOGAG00000006945CNOT37587.255Otolemur_garnettii
ENSXCOG00000019460cnot3a9091.444ENSOARG00000002981CNOT36690.909Ovis_aries
ENSXCOG00000019460cnot3a8593.162ENSPPAG00000002748CNOT37987.255Pan_paniscus
ENSXCOG00000019460cnot3a10071.218ENSPPRG00000011705CNOT37687.255Panthera_pardus
ENSXCOG00000019460cnot3a10071.141ENSPTIG00000008781CNOT39785.993Panthera_tigris_altaica
ENSXCOG00000019460cnot3a8593.162ENSPTRG00000011444CNOT37987.255Pan_troglodytes
ENSXCOG00000019460cnot3a8593.162ENSPTRG00000046717-7987.255Pan_troglodytes
ENSXCOG00000019460cnot3a8593.162ENSPANG00000009375CNOT37587.255Papio_anubis
ENSXCOG00000019460cnot3a9895.299ENSPKIG00000011733CNOT37682.069Paramormyrops_kingsleyae
ENSXCOG00000019460cnot3a9294.872ENSPKIG00000015967-9994.872Paramormyrops_kingsleyae
ENSXCOG00000019460cnot3a8892.523ENSPMGG00000022539cnot3b7276.978Periophthalmus_magnuspinnatus
ENSXCOG00000019460cnot3a5484.375ENSPMGG00000012037cnot3a8592.857Periophthalmus_magnuspinnatus
ENSXCOG00000019460cnot3a10061.916ENSPEMG00000024185Cnot37889.764Peromyscus_maniculatus_bairdii
ENSXCOG00000019460cnot3a9878.302ENSPCIG00000023018CNOT39688.976Phascolarctos_cinereus
ENSXCOG00000019460cnot3a8591.441ENSPFOG00000007168cnot3b10060.753Poecilia_formosa
ENSXCOG00000019460cnot3a10096.785ENSPFOG00000008693cnot3a9396.785Poecilia_formosa
ENSXCOG00000019460cnot3a10096.893ENSPLAG00000013324cnot3a9696.893Poecilia_latipinna
ENSXCOG00000019460cnot3a9291.441ENSPLAG00000013457cnot3b10060.753Poecilia_latipinna
ENSXCOG00000019460cnot3a10096.326ENSPMEG00000017718cnot3a9696.326Poecilia_mexicana
ENSXCOG00000019460cnot3a9291.441ENSPMEG00000010184cnot3b10060.860Poecilia_mexicana
ENSXCOG00000019460cnot3a9084.000ENSPREG00000000662cnot3b9756.972Poecilia_reticulata
ENSXCOG00000019460cnot3a10096.301ENSPREG00000007592cnot3a9998.312Poecilia_reticulata
ENSXCOG00000019460cnot3a8592.735ENSPPYG00000010372CNOT37586.928Pongo_abelii
ENSXCOG00000019460cnot3a8093.220ENSPCAG00000011999CNOT35693.220Procavia_capensis
ENSXCOG00000019460cnot3a8593.162ENSPCOG00000017673CNOT37787.255Propithecus_coquereli
ENSXCOG00000019460cnot3a9292.735ENSPVAG00000015564CNOT37086.928Pteropus_vampyrus
ENSXCOG00000019460cnot3a9794.397ENSPNYG00000003358cnot3b8887.960Pundamilia_nyererei
ENSXCOG00000019460cnot3a9799.145ENSPNYG00000002282cnot3a10081.729Pundamilia_nyererei
ENSXCOG00000019460cnot3a9894.017ENSPNAG00000027459cnot3b10066.193Pygocentrus_nattereri
ENSXCOG00000019460cnot3a9789.498ENSPNAG00000017679cnot3a9496.581Pygocentrus_nattereri
ENSXCOG00000019460cnot3a7686.218ENSRNOG00000053234Cnot37587.582Rattus_norvegicus
ENSXCOG00000019460cnot3a10070.480ENSRBIG00000031025CNOT37587.255Rhinopithecus_bieti
ENSXCOG00000019460cnot3a10070.480ENSRROG00000003872CNOT37587.255Rhinopithecus_roxellana
ENSXCOG00000019460cnot3a5339.914YPR072W-5438.934Saccharomyces_cerevisiae
ENSXCOG00000019460cnot3a9893.162ENSSBOG00000030268CNOT37887.255Saimiri_boliviensis_boliviensis
ENSXCOG00000019460cnot3a9795.299ENSSFOG00015019203-10066.993Scleropages_formosus
ENSXCOG00000019460cnot3a10085.714ENSSFOG00015000248cnot39088.128Scleropages_formosus
ENSXCOG00000019460cnot3a9797.436ENSSMAG00000013235cnot3a9782.770Scophthalmus_maximus
ENSXCOG00000019460cnot3a7992.735ENSSMAG00000016031cnot3b8488.274Scophthalmus_maximus
ENSXCOG00000019460cnot3a9798.305ENSSDUG00000008181cnot3a10098.718Seriola_dumerili
ENSXCOG00000019460cnot3a10064.632ENSSDUG00000003428cnot3b7180.412Seriola_dumerili
ENSXCOG00000019460cnot3a9294.017ENSSLDG00000014376cnot3b7180.412Seriola_lalandi_dorsalis
ENSXCOG00000019460cnot3a9198.718ENSSLDG00000014733cnot3a9985.601Seriola_lalandi_dorsalis
ENSXCOG00000019460cnot3a10061.826ENSSPUG00000008510CNOT38488.274Sphenodon_punctatus
ENSXCOG00000019460cnot3a9499.145ENSSPAG00000003858cnot3a9196.831Stegastes_partitus
ENSXCOG00000019460cnot3a9794.872ENSSPAG00000001429cnot3b10065.245Stegastes_partitus
ENSXCOG00000019460cnot3a9893.162ENSSSCG00000003264CNOT37587.255Sus_scrofa
ENSXCOG00000019460cnot3a9796.581ENSTRUG00000015732cnot3a10080.396Takifugu_rubripes
ENSXCOG00000019460cnot3a9791.453ENSTRUG00000007248cnot3b6789.305Takifugu_rubripes
ENSXCOG00000019460cnot3a7191.453ENSTNIG00000005663cnot3b7178.276Tetraodon_nigroviridis
ENSXCOG00000019460cnot3a8897.009ENSTNIG00000008082cnot3a10079.167Tetraodon_nigroviridis
ENSXCOG00000019460cnot3a5394.737ENSTBEG00000009620-5493.985Tupaia_belangeri
ENSXCOG00000019460cnot3a8393.590ENSUAMG00000005234CNOT39787.582Ursus_americanus
ENSXCOG00000019460cnot3a8393.590ENSUMAG00000010934CNOT38893.162Ursus_maritimus
ENSXCOG00000019460cnot3a8393.162ENSVVUG00000008239CNOT37488.274Vulpes_vulpes
ENSXCOG00000019460cnot3a8291.064ENSXETG00000003166cnot38487.500Xenopus_tropicalis
ENSXCOG00000019460cnot3a8591.441ENSXMAG00000014176cnot3b10061.342Xiphophorus_maculatus
ENSXCOG00000019460cnot3a10097.806ENSXMAG00000012273cnot3a9697.806Xiphophorus_maculatus

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