EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000019600 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Minus strand
Length: 182063 bases
Position: chrKQ557205.1:8512775-8694837
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000026245	RRM_1	PF00076.22	5.4e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000026563	-	1041	-	ENSXCOP00000026245	346 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000019600's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000019600's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000019600	-	84	58.754	ENSXCOG00000000211	RBMS1	94	58.427
ENSXCOG00000019600	-	84	59.459	ENSXCOG00000006995	rbms2b	96	56.630
ENSXCOG00000019600	-	74	54.545	ENSXCOG00000001659	rbms1a	86	54.167
ENSXCOG00000019600	-	95	56.734	ENSXCOG00000018635	rbms2a	99	56.552

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000019600	-	95	75.067	ENSG00000144642	RBMS3	91	74.046	Homo_sapiens
ENSXCOG00000019600	-	100	83.548	ENSAPOG00000003432	-	92	83.548	Acanthochromis_polyacanthus
ENSXCOG00000019600	-	95	64.109	ENSAPOG00000007266	rbms3	92	62.617	Acanthochromis_polyacanthus
ENSXCOG00000019600	-	79	75.000	ENSAMEG00000005947	RBMS3	99	75.000	Ailuropoda_melanoleuca
ENSXCOG00000019600	-	95	60.763	ENSACIG00000021113	RBMS3	95	61.308	Amphilophus_citrinellus
ENSXCOG00000019600	-	78	80.831	ENSACIG00000006987	-	86	80.831	Amphilophus_citrinellus
ENSXCOG00000019600	-	95	69.624	ENSAOCG00000021274	rbms3	91	67.337	Amphiprion_ocellaris
ENSXCOG00000019600	-	100	83.548	ENSAOCG00000024104	-	92	78.947	Amphiprion_ocellaris
ENSXCOG00000019600	-	88	67.967	ENSAPEG00000016299	rbms3	93	67.967	Amphiprion_percula
ENSXCOG00000019600	-	100	75.907	ENSAPEG00000009481	-	91	75.907	Amphiprion_percula
ENSXCOG00000019600	-	100	83.290	ENSATEG00000008433	-	92	83.290	Anabas_testudineus
ENSXCOG00000019600	-	95	69.624	ENSATEG00000024295	rbms3	91	68.182	Anabas_testudineus
ENSXCOG00000019600	-	95	74.202	ENSAPLG00000012270	RBMS3	92	72.911	Anas_platyrhynchos
ENSXCOG00000019600	-	95	74.799	ENSACAG00000028664	RBMS3	91	73.724	Anolis_carolinensis
ENSXCOG00000019600	-	95	73.629	ENSANAG00000021899	RBMS3	91	72.682	Aotus_nancymaae
ENSXCOG00000019600	-	99	67.089	ENSACLG00000018506	rbms3	99	67.595	Astatotilapia_calliptera
ENSXCOG00000019600	-	100	82.776	ENSACLG00000008976	-	87	76.108	Astatotilapia_calliptera
ENSXCOG00000019600	-	51	68.519	ENSAMXG00000043770	-	87	69.058	Astyanax_mexicanus
ENSXCOG00000019600	-	95	75.000	ENSAMXG00000020388	rbms3	91	74.935	Astyanax_mexicanus
ENSXCOG00000019600	-	95	75.603	ENSBTAG00000044062	RBMS3	99	72.953	Bos_taurus
ENSXCOG00000019600	-	95	73.629	ENSCJAG00000004312	RBMS3	91	72.431	Callithrix_jacchus
ENSXCOG00000019600	-	95	73.629	ENSCAFG00000005464	RBMS3	91	72.682	Canis_familiaris
ENSXCOG00000019600	-	95	73.629	ENSCAFG00020024980	RBMS3	92	72.705	Canis_lupus_dingo
ENSXCOG00000019600	-	95	74.799	ENSCHIG00000009144	RBMS3	91	73.791	Capra_hircus
ENSXCOG00000019600	-	87	76.647	ENSTSYG00000002615	RBMS3	99	76.667	Carlito_syrichta
ENSXCOG00000019600	-	95	71.429	ENSCAPG00000017783	RBMS3	97	71.237	Cavia_aperea
ENSXCOG00000019600	-	95	74.531	ENSCPOG00000006457	RBMS3	91	74.227	Cavia_porcellus
ENSXCOG00000019600	-	95	73.629	ENSCCAG00000008671	RBMS3	91	72.431	Cebus_capucinus
ENSXCOG00000019600	-	96	73.057	ENSCATG00000013222	RBMS3	92	72.167	Cercocebus_atys
ENSXCOG00000019600	-	95	74.531	ENSCLAG00000005866	RBMS3	91	73.537	Chinchilla_lanigera
ENSXCOG00000019600	-	74	75.451	ENSCSAG00000009655	RBMS3	99	75.451	Chlorocebus_sabaeus
ENSXCOG00000019600	-	87	76.347	ENSCHOG00000000758	RBMS3	76	76.364	Choloepus_hoffmanni
ENSXCOG00000019600	-	95	75.067	ENSCPBG00000022678	RBMS3	91	73.980	Chrysemys_picta_bellii
ENSXCOG00000019600	-	95	73.107	ENSCANG00000032137	RBMS3	91	72.208	Colobus_angolensis_palliatus
ENSXCOG00000019600	-	95	72.118	ENSCGRG00001007243	Rbms3	91	72.165	Cricetulus_griseus_chok1gshd
ENSXCOG00000019600	-	95	72.118	ENSCGRG00000004599	Rbms3	91	72.165	Cricetulus_griseus_crigri
ENSXCOG00000019600	-	98	80.890	ENSCSEG00000014677	-	89	81.410	Cynoglossus_semilaevis
ENSXCOG00000019600	-	95	69.892	ENSCSEG00000010011	RBMS3	95	68.514	Cynoglossus_semilaevis
ENSXCOG00000019600	-	100	83.763	ENSCVAG00000022814	-	100	83.763	Cyprinodon_variegatus
ENSXCOG00000019600	-	95	69.624	ENSCVAG00000022354	rbms3	91	68.367	Cyprinodon_variegatus
ENSXCOG00000019600	-	95	73.925	ENSDARG00000044574	rbms3	100	79.167	Danio_rerio
ENSXCOG00000019600	-	95	74.263	ENSDNOG00000016645	RBMS3	91	71.712	Dasypus_novemcinctus
ENSXCOG00000019600	-	95	73.995	ENSDORG00000007220	Rbms3	91	73.028	Dipodomys_ordii
ENSXCOG00000019600	-	87	60.303	ENSETEG00000009485	-	76	60.303	Echinops_telfairi
ENSXCOG00000019600	-	66	50.000	ENSEBUG00000005830	rbms3	89	50.000	Eptatretus_burgeri
ENSXCOG00000019600	-	95	74.799	ENSEASG00005006152	RBMS3	91	73.791	Equus_asinus_asinus
ENSXCOG00000019600	-	95	74.799	ENSECAG00000017871	RBMS3	91	73.791	Equus_caballus
ENSXCOG00000019600	-	84	65.306	ENSEEUG00000014337	RBMS3	91	64.624	Erinaceus_europaeus
ENSXCOG00000019600	-	100	80.720	ENSELUG00000006905	-	100	80.720	Esox_lucius
ENSXCOG00000019600	-	99	66.835	ENSELUG00000002862	rbms3	99	66.835	Esox_lucius
ENSXCOG00000019600	-	95	74.799	ENSFCAG00000002130	RBMS3	91	73.537	Felis_catus
ENSXCOG00000019600	-	95	75.067	ENSFALG00000009165	RBMS3	91	73.980	Ficedula_albicollis
ENSXCOG00000019600	-	95	73.995	ENSFDAG00000008278	RBMS3	91	73.028	Fukomys_damarensis
ENSXCOG00000019600	-	95	62.634	ENSFHEG00000004787	RBMS3	94	62.634	Fundulus_heteroclitus
ENSXCOG00000019600	-	98	75.628	ENSGMOG00000002600	-	97	76.543	Gadus_morhua
ENSXCOG00000019600	-	95	75.067	ENSGALG00000011439	RBMS3	91	73.980	Gallus_gallus
ENSXCOG00000019600	-	100	83.763	ENSGAFG00000003329	-	92	83.763	Gambusia_affinis
ENSXCOG00000019600	-	99	68.193	ENSGAFG00000000168	rbms3	99	68.193	Gambusia_affinis
ENSXCOG00000019600	-	74	76.259	ENSGAGG00000004039	RBMS3	99	76.259	Gopherus_agassizii
ENSXCOG00000019600	-	95	73.629	ENSGGOG00000007228	RBMS3	91	72.431	Gorilla_gorilla
ENSXCOG00000019600	-	100	82.776	ENSHBUG00000019785	-	88	80.451	Haplochromis_burtoni
ENSXCOG00000019600	-	95	74.531	ENSHGLG00000002170	RBMS3	91	73.537	Heterocephalus_glaber_female
ENSXCOG00000019600	-	95	74.531	ENSHGLG00100014278	RBMS3	91	73.537	Heterocephalus_glaber_male
ENSXCOG00000019600	-	98	81.675	ENSHCOG00000007894	-	96	82.005	Hippocampus_comes
ENSXCOG00000019600	-	95	74.663	ENSIPUG00000017680	rbms3	91	74.677	Ictalurus_punctatus
ENSXCOG00000019600	-	95	74.866	ENSSTOG00000006324	RBMS3	91	74.046	Ictidomys_tridecemlineatus
ENSXCOG00000019600	-	95	72.654	ENSJJAG00000014708	Rbms3	91	72.010	Jaculus_jaculus
ENSXCOG00000019600	-	100	82.776	ENSKMAG00000012586	-	92	82.776	Kryptolebias_marmoratus
ENSXCOG00000019600	-	95	68.901	ENSKMAG00000020500	rbms3	91	66.250	Kryptolebias_marmoratus
ENSXCOG00000019600	-	69	63.100	ENSLBEG00000006677	rbms3	97	63.100	Labrus_bergylta
ENSXCOG00000019600	-	98	81.675	ENSLBEG00000027388	-	92	82.005	Labrus_bergylta
ENSXCOG00000019600	-	95	76.676	ENSLACG00000010581	RBMS3	91	75.703	Latimeria_chalumnae
ENSXCOG00000019600	-	79	80.068	ENSLOCG00000002328	rbms3	99	80.068	Lepisosteus_oculatus
ENSXCOG00000019600	-	95	73.368	ENSLAFG00000000354	RBMS3	92	72.431	Loxodonta_africana
ENSXCOG00000019600	-	95	74.799	ENSMFAG00000033300	RBMS3	91	73.791	Macaca_fascicularis
ENSXCOG00000019600	-	95	74.799	ENSMMUG00000004404	RBMS3	91	73.791	Macaca_mulatta
ENSXCOG00000019600	-	95	73.368	ENSMNEG00000035839	RBMS3	99	72.457	Macaca_nemestrina
ENSXCOG00000019600	-	96	73.057	ENSMLEG00000029464	RBMS3	92	72.167	Mandrillus_leucophaeus
ENSXCOG00000019600	-	95	70.161	ENSMAMG00000024043	rbms3	91	69.270	Mastacembelus_armatus
ENSXCOG00000019600	-	100	82.776	ENSMAMG00000002176	-	85	82.776	Mastacembelus_armatus
ENSXCOG00000019600	-	100	82.776	ENSMZEG00005026469	-	88	81.679	Maylandia_zebra
ENSXCOG00000019600	-	95	69.086	ENSMZEG00005006308	rbms3	91	67.595	Maylandia_zebra
ENSXCOG00000019600	-	95	72.118	ENSMAUG00000016436	Rbms3	91	72.165	Mesocricetus_auratus
ENSXCOG00000019600	-	95	74.406	ENSMICG00000049249	RBMS3	91	73.418	Microcebus_murinus
ENSXCOG00000019600	-	95	71.582	ENSMOCG00000006997	Rbms3	91	71.907	Microtus_ochrogaster
ENSXCOG00000019600	-	88	68.347	ENSMMOG00000008471	RBMS3	95	68.908	Mola_mola
ENSXCOG00000019600	-	100	81.491	ENSMMOG00000015071	-	92	81.491	Mola_mola
ENSXCOG00000019600	-	95	72.610	ENSMODG00000015125	RBMS3	87	72.634	Monodelphis_domestica
ENSXCOG00000019600	-	100	82.776	ENSMALG00000009155	-	92	82.776	Monopterus_albus
ENSXCOG00000019600	-	95	69.624	ENSMALG00000019536	RBMS3	92	68.262	Monopterus_albus
ENSXCOG00000019600	-	97	71.391	MGP_CAROLIEiJ_G0032783	Rbms3	84	80.925	Mus_caroli
ENSXCOG00000019600	-	95	72.118	ENSMUSG00000039607	Rbms3	84	81.503	Mus_musculus
ENSXCOG00000019600	-	95	71.925	MGP_PahariEiJ_G0015650	Rbms3	84	81.503	Mus_pahari
ENSXCOG00000019600	-	95	72.118	MGP_SPRETEiJ_G0033930	Rbms3	84	81.503	Mus_spretus
ENSXCOG00000019600	-	95	73.629	ENSMPUG00000011956	RBMS3	92	72.705	Mustela_putorius_furo
ENSXCOG00000019600	-	95	75.067	ENSMLUG00000000659	RBMS3	91	74.046	Myotis_lucifugus
ENSXCOG00000019600	-	95	73.995	ENSNGAG00000014039	Rbms3	91	73.969	Nannospalax_galili
ENSXCOG00000019600	-	100	82.519	ENSNBRG00000018065	-	92	82.519	Neolamprologus_brichardi
ENSXCOG00000019600	-	95	73.629	ENSNLEG00000004129	RBMS3	91	72.431	Nomascus_leucogenys
ENSXCOG00000019600	-	95	65.316	ENSMEUG00000004772	RBMS3	92	64.663	Notamacropus_eugenii
ENSXCOG00000019600	-	95	73.351	ENSOPRG00000006808	RBMS3	78	72.431	Ochotona_princeps
ENSXCOG00000019600	-	95	74.799	ENSODEG00000003651	RBMS3	91	73.791	Octodon_degus
ENSXCOG00000019600	-	95	69.086	ENSONIG00000007172	rbms3	93	67.939	Oreochromis_niloticus
ENSXCOG00000019600	-	95	73.615	ENSOANG00000010529	RBMS3	91	72.431	Ornithorhynchus_anatinus
ENSXCOG00000019600	-	95	73.629	ENSOCUG00000004840	RBMS3	91	72.682	Oryctolagus_cuniculus
ENSXCOG00000019600	-	95	68.280	ENSORLG00000005370	RBMS3	91	67.176	Oryzias_latipes
ENSXCOG00000019600	-	98	81.414	ENSORLG00000002306	-	92	81.748	Oryzias_latipes
ENSXCOG00000019600	-	98	81.675	ENSORLG00020008496	-	92	82.005	Oryzias_latipes_hni
ENSXCOG00000019600	-	95	68.011	ENSORLG00020022674	RBMS3	91	66.921	Oryzias_latipes_hni
ENSXCOG00000019600	-	95	68.280	ENSORLG00015005509	rbms3	91	67.176	Oryzias_latipes_hsok
ENSXCOG00000019600	-	98	81.675	ENSORLG00015015719	-	92	82.005	Oryzias_latipes_hsok
ENSXCOG00000019600	-	100	82.005	ENSOMEG00000007677	-	100	82.005	Oryzias_melastigma
ENSXCOG00000019600	-	99	67.176	ENSOMEG00000014805	RBMS3	99	67.176	Oryzias_melastigma
ENSXCOG00000019600	-	95	72.846	ENSOARG00000014684	RBMS3	91	71.960	Ovis_aries
ENSXCOG00000019600	-	95	73.629	ENSPPAG00000036519	RBMS3	91	72.431	Pan_paniscus
ENSXCOG00000019600	-	95	73.107	ENSPPRG00000002761	RBMS3	91	72.208	Panthera_pardus
ENSXCOG00000019600	-	95	74.531	ENSPTIG00000011568	RBMS3	91	73.791	Panthera_tigris_altaica
ENSXCOG00000019600	-	95	75.067	ENSPTRG00000014709	RBMS3	91	74.046	Pan_troglodytes
ENSXCOG00000019600	-	96	73.057	ENSPANG00000010234	RBMS3	92	71.638	Papio_anubis
ENSXCOG00000019600	-	51	69.444	ENSPKIG00000007989	-	87	70.404	Paramormyrops_kingsleyae
ENSXCOG00000019600	-	95	74.799	ENSPSIG00000005269	RBMS3	91	73.724	Pelodiscus_sinensis
ENSXCOG00000019600	-	100	82.732	ENSPMGG00000021683	-	100	82.732	Periophthalmus_magnuspinnatus
ENSXCOG00000019600	-	88	68.644	ENSPMGG00000021544	rbms3	91	68.644	Periophthalmus_magnuspinnatus
ENSXCOG00000019600	-	95	71.989	ENSPEMG00000001117	Rbms3	91	72.043	Peromyscus_maniculatus_bairdii
ENSXCOG00000019600	-	74	75.585	ENSPCIG00000006106	RBMS3	75	78.333	Phascolarctos_cinereus
ENSXCOG00000019600	-	95	69.892	ENSPFOG00000017887	rbms3	91	68.448	Poecilia_formosa
ENSXCOG00000019600	-	87	71.605	ENSPLAG00000016866	-	81	71.296	Poecilia_latipinna
ENSXCOG00000019600	-	100	84.021	ENSPMEG00000002993	-	92	84.021	Poecilia_mexicana
ENSXCOG00000019600	-	100	84.021	ENSPREG00000018221	-	72	84.021	Poecilia_reticulata
ENSXCOG00000019600	-	95	69.786	ENSPREG00000011880	rbms3	96	68.354	Poecilia_reticulata
ENSXCOG00000019600	-	95	67.442	ENSPPYG00000014050	RBMS3	74	66.758	Pongo_abelii
ENSXCOG00000019600	-	94	54.068	ENSPCAG00000006307	RBMS3	91	53.713	Procavia_capensis
ENSXCOG00000019600	-	95	73.890	ENSPCOG00000017136	RBMS3	92	72.932	Propithecus_coquereli
ENSXCOG00000019600	-	87	76.347	ENSPVAG00000014037	RBMS3	76	76.364	Pteropus_vampyrus
ENSXCOG00000019600	-	100	82.776	ENSPNYG00000012624	-	92	82.776	Pundamilia_nyererei
ENSXCOG00000019600	-	95	68.817	ENSPNYG00000010546	rbms3	91	67.342	Pundamilia_nyererei
ENSXCOG00000019600	-	95	74.731	ENSPNAG00000001800	rbms3	91	74.677	Pygocentrus_nattereri
ENSXCOG00000019600	-	95	72.118	ENSRNOG00000025881	Rbms3	91	72.165	Rattus_norvegicus
ENSXCOG00000019600	-	95	72.846	ENSRBIG00000035863	RBMS3	91	71.960	Rhinopithecus_bieti
ENSXCOG00000019600	-	95	73.107	ENSRROG00000027512	RBMS3	97	71.960	Rhinopithecus_roxellana
ENSXCOG00000019600	-	95	73.629	ENSSBOG00000020232	RBMS3	91	72.431	Saimiri_boliviensis_boliviensis
ENSXCOG00000019600	-	95	68.365	ENSSHAG00000002411	RBMS3	99	67.513	Sarcophilus_harrisii
ENSXCOG00000019600	-	100	79.692	ENSSFOG00015008578	rbms3	100	79.692	Scleropages_formosus
ENSXCOG00000019600	-	96	76.800	ENSSMAG00000020065	-	97	76.800	Scophthalmus_maximus
ENSXCOG00000019600	-	95	68.011	ENSSMAG00000004997	rbms3	99	68.548	Scophthalmus_maximus
ENSXCOG00000019600	-	95	69.624	ENSSDUG00000013656	RBMS3	94	68.010	Seriola_dumerili
ENSXCOG00000019600	-	100	83.548	ENSSDUG00000019287	-	92	83.548	Seriola_dumerili
ENSXCOG00000019600	-	95	69.892	ENSSLDG00000020276	RBMS3	91	67.750	Seriola_lalandi_dorsalis
ENSXCOG00000019600	-	100	83.548	ENSSLDG00000013224	-	92	83.548	Seriola_lalandi_dorsalis
ENSXCOG00000019600	-	84	60.058	ENSSARG00000000695	RBMS3	98	59.780	Sorex_araneus
ENSXCOG00000019600	-	80	76.589	ENSSPUG00000017197	RBMS3	97	76.589	Sphenodon_punctatus
ENSXCOG00000019600	-	95	69.355	ENSSPAG00000020693	rbms3	97	68.245	Stegastes_partitus
ENSXCOG00000019600	-	100	83.548	ENSSPAG00000003983	-	92	76.617	Stegastes_partitus
ENSXCOG00000019600	-	95	74.531	ENSSSCG00000036381	RBMS3	91	73.537	Sus_scrofa
ENSXCOG00000019600	-	87	76.877	ENSTGUG00000003572	RBMS3	99	76.900	Taeniopygia_guttata
ENSXCOG00000019600	-	88	85.583	ENSTRUG00000007482	-	79	85.583	Takifugu_rubripes
ENSXCOG00000019600	-	95	68.097	ENSTRUG00000021719	RBMS3	91	66.247	Takifugu_rubripes
ENSXCOG00000019600	-	84	72.886	ENSTBEG00000005362	RBMS3	98	71.901	Tupaia_belangeri
ENSXCOG00000019600	-	95	72.846	ENSTTRG00000006202	RBMS3	92	71.960	Tursiops_truncatus
ENSXCOG00000019600	-	95	73.629	ENSUMAG00000000263	RBMS3	91	72.682	Ursus_maritimus
ENSXCOG00000019600	-	95	71.654	ENSVPAG00000003842	RBMS3	97	70.781	Vicugna_pacos
ENSXCOG00000019600	-	95	74.247	ENSVVUG00000004660	RBMS3	99	68.696	Vulpes_vulpes
ENSXCOG00000019600	-	80	73.684	ENSXETG00000032055	RBMS3	98	73.684	Xenopus_tropicalis
ENSXCOG00000019600	-	95	69.624	ENSXMAG00000021783	rbms3	99	61.832	Xiphophorus_maculatus
ENSXCOG00000019600	-	100	84.021	ENSXMAG00000014382	-	92	84.021	Xiphophorus_maculatus