EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSXCOG00000019695 (Gene tree)
Gene ID
-
Gene Symbol
cpsf3
Alias
si:dkey-81b15.1|wu:fc32f10|zgc:101655
Full Name
cleavage and polyadenylation specific factor 3
Gene Type
protein_coding
Species
Xiphophorus_couchianus
Status
putative
Strand
Minus strand
Length
7093 bases
Position
chrKQ557207.1:3984952-3992044
Accession
ZDB-GENE-030131-3275
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSXCOP00000026374CPSF73-100_CPF11718.85.1e-5311
ENSXCOP00000026374Beta-CaspPF10996.89.7e-3411
ENSXCOP00000026374Lactamase_BPF00753.271.4e-1811
ENSXCOP00000026374RMMBLPF07521.121.4e-2111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSXCOT00000026694-2052-ENSXCOP00000026374683 (aa)--
Gene Model
Click here to download ENSXCOG00000019695's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000019695's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSXCOG00000019695cpsf35378.763ENSXCOG00000000957-8778.763
ENSXCOG00000019695cpsf36835.865ENSXCOG00000015382ints117835.865
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSXCOG00000019695cpsf39985.044ENSG00000119203CPSF310098.529Homo_sapiens
ENSXCOG00000019695cpsf37595.678ENSAPOG00000012241CPSF39195.678Acanthochromis_polyacanthus
ENSXCOG00000019695cpsf310093.149ENSAPOG00000022087cpsf310093.149Acanthochromis_polyacanthus
ENSXCOG00000019695cpsf39985.191ENSAMEG00000008493CPSF39985.191Ailuropoda_melanoleuca
ENSXCOG00000019695cpsf39184.469ENSACIG00000023663CPSF39984.469Amphilophus_citrinellus
ENSXCOG00000019695cpsf39188.160ENSACIG00000009846cpsf310081.778Amphilophus_citrinellus
ENSXCOG00000019695cpsf310086.957ENSAOCG00000010077CPSF310086.957Amphiprion_ocellaris
ENSXCOG00000019695cpsf310093.149ENSAOCG00000022056cpsf310093.149Amphiprion_ocellaris
ENSXCOG00000019695cpsf310093.294ENSAPEG00000019526cpsf39994.673Amphiprion_percula
ENSXCOG00000019695cpsf310086.957ENSAPEG00000021167CPSF310086.957Amphiprion_percula
ENSXCOG00000019695cpsf39983.090ENSATEG00000014525CPSF39983.090Anabas_testudineus
ENSXCOG00000019695cpsf39992.251ENSATEG00000003959cpsf39992.251Anabas_testudineus
ENSXCOG00000019695cpsf39784.352ENSAPLG00000006941CPSF39884.352Anas_platyrhynchos
ENSXCOG00000019695cpsf39282.261ENSACAG00000001759CPSF39982.261Anolis_carolinensis
ENSXCOG00000019695cpsf39980.205ENSANAG00000031254CPSF39980.810Aotus_nancymaae
ENSXCOG00000019695cpsf310089.747ENSACLG00000014484cpsf39993.202Astatotilapia_calliptera
ENSXCOG00000019695cpsf39184.786ENSACLG00000018846CPSF39984.786Astatotilapia_calliptera
ENSXCOG00000019695cpsf39986.502ENSAMXG00000004786cpsf39986.502Astyanax_mexicanus
ENSXCOG00000019695cpsf39985.191ENSBTAG00000019735CPSF39985.191Bos_taurus
ENSXCOG00000019695cpsf39257.165WBGene00013460cpsf-39157.165Caenorhabditis_elegans
ENSXCOG00000019695cpsf39984.897ENSCJAG00000006276CPSF39984.897Callithrix_jacchus
ENSXCOG00000019695cpsf39985.191ENSCAFG00000003375CPSF39585.191Canis_familiaris
ENSXCOG00000019695cpsf39087.702ENSCAFG00020026799CPSF39987.702Canis_lupus_dingo
ENSXCOG00000019695cpsf39985.191ENSCHIG00000013973CPSF39985.191Capra_hircus
ENSXCOG00000019695cpsf39985.044ENSTSYG00000002967CPSF39985.044Carlito_syrichta
ENSXCOG00000019695cpsf39684.858ENSCAPG00000013851CPSF39984.858Cavia_aperea
ENSXCOG00000019695cpsf39984.897ENSCPOG00000011299CPSF39984.897Cavia_porcellus
ENSXCOG00000019695cpsf39984.897ENSCCAG00000036730CPSF39985.007Cebus_capucinus
ENSXCOG00000019695cpsf39983.652ENSCATG00000014770CPSF39990.501Cercocebus_atys
ENSXCOG00000019695cpsf39984.457ENSCLAG00000002727CPSF39984.457Chinchilla_lanigera
ENSXCOG00000019695cpsf39977.126ENSCSAG00000007125CPSF39977.126Chlorocebus_sabaeus
ENSXCOG00000019695cpsf385100.000ENSCHOG00000000180CPSF38560.457Choloepus_hoffmanni
ENSXCOG00000019695cpsf39984.928ENSCPBG00000014074CPSF39984.928Chrysemys_picta_bellii
ENSXCOG00000019695cpsf39867.449ENSCING00000007214-9867.449Ciona_intestinalis
ENSXCOG00000019695cpsf39975.292ENSCANG00000034435CPSF39975.292Colobus_angolensis_palliatus
ENSXCOG00000019695cpsf39984.751ENSCGRG00001013134Cpsf39984.751Cricetulus_griseus_chok1gshd
ENSXCOG00000019695cpsf39984.751ENSCGRG00000018319Cpsf39984.751Cricetulus_griseus_crigri
ENSXCOG00000019695cpsf310085.818ENSCSEG00000002021CPSF310085.818Cynoglossus_semilaevis
ENSXCOG00000019695cpsf310086.667ENSCVAG00000015067CPSF310086.667Cyprinodon_variegatus
ENSXCOG00000019695cpsf310086.812ENSDARG00000027649cpsf310086.812Danio_rerio
ENSXCOG00000019695cpsf39983.602ENSDNOG00000008940CPSF39583.602Dasypus_novemcinctus
ENSXCOG00000019695cpsf39586.308ENSDORG00000014263Cpsf39986.308Dipodomys_ordii
ENSXCOG00000019695cpsf39966.617FBgn0261065Cpsf739966.617Drosophila_melanogaster
ENSXCOG00000019695cpsf39574.308ENSETEG00000003893CPSF39974.308Echinops_telfairi
ENSXCOG00000019695cpsf39974.048ENSEBUG00000009018cpsf39974.048Eptatretus_burgeri
ENSXCOG00000019695cpsf39985.191ENSEASG00005003970CPSF39985.191Equus_asinus_asinus
ENSXCOG00000019695cpsf39985.191ENSECAG00000019911CPSF39689.899Equus_caballus
ENSXCOG00000019695cpsf39970.381ENSEEUG00000015422CPSF39970.381Erinaceus_europaeus
ENSXCOG00000019695cpsf39989.099ENSELUG00000013775cpsf39989.099Esox_lucius
ENSXCOG00000019695cpsf39985.191ENSFCAG00000007852CPSF39985.191Felis_catus
ENSXCOG00000019695cpsf39484.080ENSFALG00000006572CPSF310084.080Ficedula_albicollis
ENSXCOG00000019695cpsf39984.457ENSFDAG00000006317CPSF39984.457Fukomys_damarensis
ENSXCOG00000019695cpsf35866.098ENSFHEG00000012186CPSF310066.098Fundulus_heteroclitus
ENSXCOG00000019695cpsf310095.627ENSFHEG00000014774cpsf310095.627Fundulus_heteroclitus
ENSXCOG00000019695cpsf310088.824ENSGMOG00000003157cpsf310088.824Gadus_morhua
ENSXCOG00000019695cpsf39984.470ENSGALG00000016424CPSF39984.470Gallus_gallus
ENSXCOG00000019695cpsf39797.588ENSGAFG00000019449cpsf310090.776Gambusia_affinis
ENSXCOG00000019695cpsf310087.536ENSGAFG00000008016CPSF310087.536Gambusia_affinis
ENSXCOG00000019695cpsf36779.443ENSGAGG00000025583CPSF39379.443Gopherus_agassizii
ENSXCOG00000019695cpsf39982.927ENSGGOG00000001757CPSF39196.360Gorilla_gorilla
ENSXCOG00000019695cpsf35878.607ENSHBUG00000014332CPSF310078.607Haplochromis_burtoni
ENSXCOG00000019695cpsf310093.149ENSHBUG00000001188cpsf310093.149Haplochromis_burtoni
ENSXCOG00000019695cpsf39984.457ENSHGLG00000000666CPSF39984.457Heterocephalus_glaber_female
ENSXCOG00000019695cpsf39984.457ENSHGLG00100007765CPSF39984.457Heterocephalus_glaber_male
ENSXCOG00000019695cpsf39991.095ENSHCOG00000007251cpsf39991.095Hippocampus_comes
ENSXCOG00000019695cpsf39985.631ENSHCOG00000015957CPSF39985.631Hippocampus_comes
ENSXCOG00000019695cpsf39987.083ENSIPUG00000023488cpsf39987.083Ictalurus_punctatus
ENSXCOG00000019695cpsf39984.751ENSSTOG00000004476CPSF39984.751Ictidomys_tridecemlineatus
ENSXCOG00000019695cpsf39984.187ENSJJAG00000023415Cpsf39984.187Jaculus_jaculus
ENSXCOG00000019695cpsf310086.232ENSKMAG00000007317CPSF310086.232Kryptolebias_marmoratus
ENSXCOG00000019695cpsf310093.586ENSKMAG00000002806cpsf310093.586Kryptolebias_marmoratus
ENSXCOG00000019695cpsf35487.634ENSLBEG00000015018-9987.634Labrus_bergylta
ENSXCOG00000019695cpsf39984.141ENSLBEG00000020569cpsf39684.141Labrus_bergylta
ENSXCOG00000019695cpsf39688.280ENSLBEG00000013492CPSF39988.280Labrus_bergylta
ENSXCOG00000019695cpsf39978.520ENSLACG00000008308CPSF39978.520Latimeria_chalumnae
ENSXCOG00000019695cpsf310086.724ENSLOCG00000016823cpsf310086.724Lepisosteus_oculatus
ENSXCOG00000019695cpsf39883.947ENSLAFG00000009467CPSF39983.947Loxodonta_africana
ENSXCOG00000019695cpsf39984.897ENSMFAG00000001339CPSF39593.361Macaca_fascicularis
ENSXCOG00000019695cpsf39384.520ENSMMUG00000018038CPSF39293.361Macaca_mulatta
ENSXCOG00000019695cpsf39971.701ENSMNEG00000039447CPSF39971.701Macaca_nemestrina
ENSXCOG00000019695cpsf39985.044ENSMLEG00000026825CPSF39296.352Mandrillus_leucophaeus
ENSXCOG00000019695cpsf39184.554ENSMAMG00000008835CPSF39978.488Mastacembelus_armatus
ENSXCOG00000019695cpsf310091.399ENSMAMG00000003076cpsf310091.399Mastacembelus_armatus
ENSXCOG00000019695cpsf310093.149ENSMZEG00005014358cpsf310093.149Maylandia_zebra
ENSXCOG00000019695cpsf310086.812ENSMZEG00005006258CPSF310086.812Maylandia_zebra
ENSXCOG00000019695cpsf39684.708ENSMGAG00000013995CPSF310084.708Meleagris_gallopavo
ENSXCOG00000019695cpsf35475.200ENSMAUG00000000166Cpsf39975.200Mesocricetus_auratus
ENSXCOG00000019695cpsf39980.292ENSMICG00000002363CPSF39980.292Microcebus_murinus
ENSXCOG00000019695cpsf39982.301ENSMOCG00000020067Cpsf39982.301Microtus_ochrogaster
ENSXCOG00000019695cpsf38069.940ENSMMOG00000011923CPSF38576.786Mola_mola
ENSXCOG00000019695cpsf39386.813ENSMMOG00000018212CPSF39886.813Mola_mola
ENSXCOG00000019695cpsf39983.309ENSMODG00000014703CPSF39983.309Monodelphis_domestica
ENSXCOG00000019695cpsf39282.547ENSMALG00000011474CPSF39982.547Monopterus_albus
ENSXCOG00000019695cpsf310092.128ENSMALG00000016416cpsf310092.128Monopterus_albus
ENSXCOG00000019695cpsf39985.337MGP_CAROLIEiJ_G0017640Cpsf39985.337Mus_caroli
ENSXCOG00000019695cpsf39985.337ENSMUSG00000054309Cpsf39697.034Mus_musculus
ENSXCOG00000019695cpsf39985.191MGP_PahariEiJ_G0029397Cpsf39985.191Mus_pahari
ENSXCOG00000019695cpsf39985.337MGP_SPRETEiJ_G0018481Cpsf39985.337Mus_spretus
ENSXCOG00000019695cpsf39985.169ENSMPUG00000013213CPSF39985.169Mustela_putorius_furo
ENSXCOG00000019695cpsf39985.066ENSMLUG00000010636CPSF39985.066Myotis_lucifugus
ENSXCOG00000019695cpsf39985.044ENSNGAG00000019836Cpsf39985.044Nannospalax_galili
ENSXCOG00000019695cpsf310093.003ENSNBRG00000004770cpsf310093.003Neolamprologus_brichardi
ENSXCOG00000019695cpsf39184.786ENSNBRG00000010525CPSF39984.786Neolamprologus_brichardi
ENSXCOG00000019695cpsf39984.897ENSNLEG00000013359CPSF39196.360Nomascus_leucogenys
ENSXCOG00000019695cpsf39954.692ENSMEUG00000013117-9954.692Notamacropus_eugenii
ENSXCOG00000019695cpsf39876.730ENSOPRG00000008902CPSF39976.730Ochotona_princeps
ENSXCOG00000019695cpsf39984.604ENSODEG00000003129CPSF39984.604Octodon_degus
ENSXCOG00000019695cpsf310092.566ENSONIG00000018812cpsf310092.566Oreochromis_niloticus
ENSXCOG00000019695cpsf38181.883ENSOANG00000008577CPSF39981.883Ornithorhynchus_anatinus
ENSXCOG00000019695cpsf39985.191ENSOCUG00000003728CPSF39985.191Oryctolagus_cuniculus
ENSXCOG00000019695cpsf310092.274ENSORLG00000018854cpsf310092.274Oryzias_latipes
ENSXCOG00000019695cpsf310092.128ENSORLG00020013331cpsf310092.128Oryzias_latipes_hni
ENSXCOG00000019695cpsf310092.274ENSORLG00015011017cpsf310092.274Oryzias_latipes_hsok
ENSXCOG00000019695cpsf310091.837ENSOMEG00000010647cpsf39691.837Oryzias_melastigma
ENSXCOG00000019695cpsf39975.073ENSOGAG00000001680CPSF39975.073Otolemur_garnettii
ENSXCOG00000019695cpsf39985.191ENSOARG00000015073CPSF39985.191Ovis_aries
ENSXCOG00000019695cpsf39985.044ENSPPAG00000042457CPSF39196.360Pan_paniscus
ENSXCOG00000019695cpsf39985.044ENSPPRG00000016790CPSF39985.191Panthera_pardus
ENSXCOG00000019695cpsf39885.420ENSPTIG00000003920CPSF39985.567Panthera_tigris_altaica
ENSXCOG00000019695cpsf39985.044ENSPTRG00000011638CPSF39196.360Pan_troglodytes
ENSXCOG00000019695cpsf39985.044ENSPANG00000016798CPSF39593.361Papio_anubis
ENSXCOG00000019695cpsf310086.812ENSPKIG00000023646cpsf310086.812Paramormyrops_kingsleyae
ENSXCOG00000019695cpsf39983.871ENSPSIG00000016144CPSF39983.871Pelodiscus_sinensis
ENSXCOG00000019695cpsf35878.607ENSPMGG00000015311CPSF310078.607Periophthalmus_magnuspinnatus
ENSXCOG00000019695cpsf38290.283ENSPMGG00000006141-10077.745Periophthalmus_magnuspinnatus
ENSXCOG00000019695cpsf39984.751ENSPEMG00000017668Cpsf39984.897Peromyscus_maniculatus_bairdii
ENSXCOG00000019695cpsf37988.766ENSPMAG00000004841cpsf39988.766Petromyzon_marinus
ENSXCOG00000019695cpsf39684.384ENSPCIG00000009823CPSF39884.663Phascolarctos_cinereus
ENSXCOG00000019695cpsf310087.246ENSPFOG00000010418-10087.246Poecilia_formosa
ENSXCOG00000019695cpsf310098.102ENSPFOG00000015922cpsf310098.102Poecilia_formosa
ENSXCOG00000019695cpsf35880.000ENSPLAG00000021300-10080.000Poecilia_latipinna
ENSXCOG00000019695cpsf310098.102ENSPLAG00000000882cpsf310098.102Poecilia_latipinna
ENSXCOG00000019695cpsf310098.248ENSPMEG00000018309cpsf310098.248Poecilia_mexicana
ENSXCOG00000019695cpsf310081.805ENSPREG00000004482CPSF310081.805Poecilia_reticulata
ENSXCOG00000019695cpsf39796.624ENSPREG00000014875cpsf310089.898Poecilia_reticulata
ENSXCOG00000019695cpsf39980.792ENSPPYG00000012666CPSF39980.792Pongo_abelii
ENSXCOG00000019695cpsf38564.717ENSPCAG00000015042CPSF38964.717Procavia_capensis
ENSXCOG00000019695cpsf38885.567ENSPCOG00000023016CPSF39985.567Propithecus_coquereli
ENSXCOG00000019695cpsf39985.316ENSPVAG00000005324CPSF39985.316Pteropus_vampyrus
ENSXCOG00000019695cpsf37990.625ENSPNYG00000021047CPSF39190.625Pundamilia_nyererei
ENSXCOG00000019695cpsf310093.149ENSPNYG00000004405cpsf310093.149Pundamilia_nyererei
ENSXCOG00000019695cpsf310086.812ENSPNAG00000023060cpsf310086.812Pygocentrus_nattereri
ENSXCOG00000019695cpsf39985.316ENSRNOG00000052418Cpsf39985.316Rattus_norvegicus
ENSXCOG00000019695cpsf39979.912ENSRBIG00000041615CPSF39981.115Rhinopithecus_bieti
ENSXCOG00000019695cpsf39985.044ENSRROG00000033792CPSF39985.044Rhinopithecus_roxellana
ENSXCOG00000019695cpsf39638.932YLR277CYSH19838.932Saccharomyces_cerevisiae
ENSXCOG00000019695cpsf39681.532ENSSBOG00000027263CPSF39781.532Saimiri_boliviensis_boliviensis
ENSXCOG00000019695cpsf39984.604ENSSHAG00000007024CPSF39984.604Sarcophilus_harrisii
ENSXCOG00000019695cpsf310086.667ENSSFOG00015002108cpsf310086.667Scleropages_formosus
ENSXCOG00000019695cpsf39688.073ENSSMAG00000020534CPSF39788.073Scophthalmus_maximus
ENSXCOG00000019695cpsf310086.667ENSSDUG00000018498CPSF310086.667Seriola_dumerili
ENSXCOG00000019695cpsf310092.420ENSSDUG00000002828cpsf39792.420Seriola_dumerili
ENSXCOG00000019695cpsf310086.667ENSSLDG00000005234CPSF310086.667Seriola_lalandi_dorsalis
ENSXCOG00000019695cpsf310092.128ENSSLDG00000008469cpsf39792.128Seriola_lalandi_dorsalis
ENSXCOG00000019695cpsf39082.519ENSSARG00000005186CPSF39082.519Sorex_araneus
ENSXCOG00000019695cpsf39683.284ENSSPUG00000015525CPSF39783.284Sphenodon_punctatus
ENSXCOG00000019695cpsf310086.667ENSSPAG00000002906CPSF310086.667Stegastes_partitus
ENSXCOG00000019695cpsf310092.566ENSSPAG00000018579cpsf310092.566Stegastes_partitus
ENSXCOG00000019695cpsf39985.191ENSSSCG00000020799CPSF39985.191Sus_scrofa
ENSXCOG00000019695cpsf39984.357ENSTGUG00000013016CPSF310084.357Taeniopygia_guttata
ENSXCOG00000019695cpsf35871.571ENSTRUG00000013905CPSF39971.571Takifugu_rubripes
ENSXCOG00000019695cpsf39989.327ENSTRUG00000007030cpsf39889.327Takifugu_rubripes
ENSXCOG00000019695cpsf38490.110ENSTBEG00000002707CPSF38490.110Tupaia_belangeri
ENSXCOG00000019695cpsf38673.123ENSTTRG00000000861CPSF38773.123Tursiops_truncatus
ENSXCOG00000019695cpsf39685.845ENSUAMG00000007535CPSF39485.845Ursus_americanus
ENSXCOG00000019695cpsf39384.830ENSUMAG00000003676CPSF39589.027Ursus_maritimus
ENSXCOG00000019695cpsf39285.331ENSVPAG00000008041CPSF310085.331Vicugna_pacos
ENSXCOG00000019695cpsf39985.191ENSVVUG00000002194CPSF39985.191Vulpes_vulpes
ENSXCOG00000019695cpsf39983.019ENSXETG00000008263cpsf39983.019Xenopus_tropicalis
ENSXCOG00000019695cpsf310087.681ENSXMAG00000027291CPSF310087.681Xiphophorus_maculatus
ENSXCOG00000019695cpsf310099.125ENSXMAG00000009784cpsf310099.221Xiphophorus_maculatus

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