EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSXCOG00000019901 (Gene tree)
Gene ID
-
Gene Symbol
pabpc1b
Alias
-
Full Name
poly A binding protein%2C cytoplasmic 1 b
Gene Type
protein_coding
Species
Xiphophorus_couchianus
Status
putative
Strand
Minus strand
Length
7623 bases
Position
chrKQ557205.1:12163197-12170819
Accession
ZDB-GENE-050308-1
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSXCOP00000026649PABPPF00658.183.9e-3211
ENSXCOP00000026649RRM_5PF13893.65.3e-0912
ENSXCOP00000026649RRM_5PF13893.65.3e-0922
ENSXCOP00000026649RRM_1PF00076.224.8e-8914
ENSXCOP00000026649RRM_1PF00076.224.8e-8924
ENSXCOP00000026649RRM_1PF00076.224.8e-8934
ENSXCOP00000026649RRM_1PF00076.224.8e-8944
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSXCOT00000026973-1827-ENSXCOP00000026649608 (aa)--
Gene Model
Click here to download ENSXCOG00000019901's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000019901's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSXCOG00000019901pabpc1b5942.105ENSXCOG00000016995rbm195840.789
ENSXCOG00000019901pabpc1b10085.855ENSXCOG00000017066pabpc1a10086.371
ENSXCOG00000019901pabpc1b6332.000ENSXCOG00000002464ELAVL29132.000
ENSXCOG00000019901pabpc1b5531.008ENSXCOG00000007974trnau1apb7930.201
ENSXCOG00000019901pabpc1b9869.677ENSXCOG00000005459pabpc1l9983.688
ENSXCOG00000019901pabpc1b5931.461ENSXCOG00000008068-9231.461
ENSXCOG00000019901pabpc1b9974.094ENSXCOG00000013190pabpc49683.491
ENSXCOG00000019901pabpc1b6131.548ENSXCOG00000008899-9031.548
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSXCOG00000019901pabpc1b6079.592ENSG00000184388PABPC1L2B9879.592Homo_sapiens
ENSXCOG00000019901pabpc1b6079.592ENSG00000186288PABPC1L2A9879.592Homo_sapiens
ENSXCOG00000019901pabpc1b10090.379ENSAPOG00000017776pabpc1b10090.536Acanthochromis_polyacanthus
ENSXCOG00000019901pabpc1b10086.050ENSAPOG00000015105pabpc1a10086.050Acanthochromis_polyacanthus
ENSXCOG00000019901pabpc1b6079.592ENSAMEG00000019441-9879.592Ailuropoda_melanoleuca
ENSXCOG00000019901pabpc1b10086.349ENSACIG00000018366pabpc1b10086.508Amphilophus_citrinellus
ENSXCOG00000019901pabpc1b10085.893ENSACIG00000004685pabpc1a10085.893Amphilophus_citrinellus
ENSXCOG00000019901pabpc1b10090.536ENSAOCG00000019839pabpc1b10090.536Amphiprion_ocellaris
ENSXCOG00000019901pabpc1b10085.737ENSAOCG00000011656pabpc1a10085.737Amphiprion_ocellaris
ENSXCOG00000019901pabpc1b10085.737ENSAPEG00000006963pabpc1a10085.737Amphiprion_percula
ENSXCOG00000019901pabpc1b10090.536ENSAPEG00000010435pabpc1b10090.536Amphiprion_percula
ENSXCOG00000019901pabpc1b10090.125ENSATEG00000012917pabpc1b10090.566Anabas_testudineus
ENSXCOG00000019901pabpc1b10085.580ENSATEG00000024852pabpc1a10085.737Anabas_testudineus
ENSXCOG00000019901pabpc1b6079.592ENSANAG00000019431-9879.592Aotus_nancymaae
ENSXCOG00000019901pabpc1b6079.592ENSANAG00000019429-9879.592Aotus_nancymaae
ENSXCOG00000019901pabpc1b10089.117ENSACLG00000014335pabpc1b10089.117Astatotilapia_calliptera
ENSXCOG00000019901pabpc1b10085.423ENSACLG00000009399pabpc1a10085.580Astatotilapia_calliptera
ENSXCOG00000019901pabpc1b10088.346ENSAMXG00000008599pabpc1b10088.346Astyanax_mexicanus
ENSXCOG00000019901pabpc1b6276.555ENSBTAG00000052491-9876.555Bos_taurus
ENSXCOG00000019901pabpc1b6278.537ENSBTAG00000050902-9878.537Bos_taurus
ENSXCOG00000019901pabpc1b6079.592ENSCJAG00000041326-9879.592Callithrix_jacchus
ENSXCOG00000019901pabpc1b6278.537ENSCAFG00020002052-9878.537Canis_lupus_dingo
ENSXCOG00000019901pabpc1b6079.592ENSCHIG00000011138-9879.592Capra_hircus
ENSXCOG00000019901pabpc1b6079.592ENSCHIG00000006283-9879.592Capra_hircus
ENSXCOG00000019901pabpc1b6079.592ENSTSYG00000001775-9879.592Carlito_syrichta
ENSXCOG00000019901pabpc1b6079.592ENSCPOG00000009525-9879.592Cavia_porcellus
ENSXCOG00000019901pabpc1b6079.592ENSCCAG00000031524-9879.592Cebus_capucinus
ENSXCOG00000019901pabpc1b6079.592ENSCATG00000043125-9879.592Cercocebus_atys
ENSXCOG00000019901pabpc1b6079.592ENSCATG00000042826-9879.592Cercocebus_atys
ENSXCOG00000019901pabpc1b6078.571ENSCLAG00000017412-9878.571Chinchilla_lanigera
ENSXCOG00000019901pabpc1b6078.571ENSCLAG00000017409-9878.571Chinchilla_lanigera
ENSXCOG00000019901pabpc1b6079.592ENSCSAG00000000102-9879.592Chlorocebus_sabaeus
ENSXCOG00000019901pabpc1b6080.110ENSCGRG00001023387-9678.351Cricetulus_griseus_chok1gshd
ENSXCOG00000019901pabpc1b9985.647ENSCSEG00000013324pabpc1a10085.782Cynoglossus_semilaevis
ENSXCOG00000019901pabpc1b10086.593ENSCSEG00000015241-10086.593Cynoglossus_semilaevis
ENSXCOG00000019901pabpc1b10090.079ENSCVAG00000005489pabpc1b10089.449Cyprinodon_variegatus
ENSXCOG00000019901pabpc1b10086.364ENSCVAG00000021872pabpc1a10086.520Cyprinodon_variegatus
ENSXCOG00000019901pabpc1b10086.006ENSDARG00000017219pabpc1a10086.006Danio_rerio
ENSXCOG00000019901pabpc1b10088.504ENSDARG00000021140pabpc1b9993.617Danio_rerio
ENSXCOG00000019901pabpc1b6080.423ENSDNOG00000030926-9878.061Dasypus_novemcinctus
ENSXCOG00000019901pabpc1b6078.061ENSDORG00000011362-9878.061Dipodomys_ordii
ENSXCOG00000019901pabpc1b6278.155ENSEASG00005010399-9878.155Equus_asinus_asinus
ENSXCOG00000019901pabpc1b6278.155ENSECAG00000002620-9878.155Equus_caballus
ENSXCOG00000019901pabpc1b6275.000ENSEEUG00000008203-9875.000Erinaceus_europaeus
ENSXCOG00000019901pabpc1b6259.052ENSELUG00000005389-9759.052Esox_lucius
ENSXCOG00000019901pabpc1b9986.435ENSELUG00000003614pabpc1a10086.435Esox_lucius
ENSXCOG00000019901pabpc1b10086.813ENSELUG00000015062-10086.813Esox_lucius
ENSXCOG00000019901pabpc1b6079.592ENSFCAG00000039701-9879.592Felis_catus
ENSXCOG00000019901pabpc1b6079.592ENSFDAG00000005484-9879.592Fukomys_damarensis
ENSXCOG00000019901pabpc1b10086.364ENSFHEG00000018979pabpc1a10086.050Fundulus_heteroclitus
ENSXCOG00000019901pabpc1b10090.852ENSFHEG00000008186pabpc1b10090.852Fundulus_heteroclitus
ENSXCOG00000019901pabpc1b9984.292ENSGMOG00000013448pabpc1a9981.069Gadus_morhua
ENSXCOG00000019901pabpc1b10080.685ENSGMOG00000002448-10080.685Gadus_morhua
ENSXCOG00000019901pabpc1b10086.460ENSGAFG00000019750pabpc1a10086.460Gambusia_affinis
ENSXCOG00000019901pabpc1b10098.520ENSGAFG00000010193pabpc1b10098.520Gambusia_affinis
ENSXCOG00000019901pabpc1b10085.893ENSGACG00000003572pabpc1a10085.893Gasterosteus_aculeatus
ENSXCOG00000019901pabpc1b10087.950ENSGACG00000003771pabpc1b9989.865Gasterosteus_aculeatus
ENSXCOG00000019901pabpc1b6079.592ENSGGOG00000043933-9879.592Gorilla_gorilla
ENSXCOG00000019901pabpc1b6079.592ENSGGOG00000038606-9879.592Gorilla_gorilla
ENSXCOG00000019901pabpc1b10085.423ENSHBUG00000020487pabpc1a10085.580Haplochromis_burtoni
ENSXCOG00000019901pabpc1b10089.117ENSHBUG00000002075pabpc1b10089.117Haplochromis_burtoni
ENSXCOG00000019901pabpc1b6079.592ENSHGLG00000019762-9879.592Heterocephalus_glaber_female
ENSXCOG00000019901pabpc1b6079.592ENSHGLG00000019668-9879.592Heterocephalus_glaber_female
ENSXCOG00000019901pabpc1b6079.592ENSHGLG00100020854-9879.592Heterocephalus_glaber_male
ENSXCOG00000019901pabpc1b9868.539ENSHCOG00000003175pabpc1b9970.169Hippocampus_comes
ENSXCOG00000019901pabpc1b10085.893ENSHCOG00000013502pabpc1a10085.893Hippocampus_comes
ENSXCOG00000019901pabpc1b7755.224ENSIPUG00000018724-7655.224Ictalurus_punctatus
ENSXCOG00000019901pabpc1b10085.601ENSIPUG00000008848pabpc1a10086.234Ictalurus_punctatus
ENSXCOG00000019901pabpc1b10087.356ENSIPUG00000010791-10087.356Ictalurus_punctatus
ENSXCOG00000019901pabpc1b7755.532ENSIPUG00000021244-6555.532Ictalurus_punctatus
ENSXCOG00000019901pabpc1b6080.102ENSSTOG00000026028-9880.102Ictidomys_tridecemlineatus
ENSXCOG00000019901pabpc1b6080.102ENSSTOG00000022096-9880.102Ictidomys_tridecemlineatus
ENSXCOG00000019901pabpc1b6079.082ENSJJAG00000007037-9879.082Jaculus_jaculus
ENSXCOG00000019901pabpc1b10089.557ENSKMAG00000008049pabpc1b10089.715Kryptolebias_marmoratus
ENSXCOG00000019901pabpc1b10085.781ENSKMAG00000000605pabpc1a10085.781Kryptolebias_marmoratus
ENSXCOG00000019901pabpc1b10088.942ENSLBEG00000026845pabpc1b10088.784Labrus_bergylta
ENSXCOG00000019901pabpc1b10085.893ENSLBEG00000024002-10085.893Labrus_bergylta
ENSXCOG00000019901pabpc1b6078.974ENSLAFG00000023096-9878.974Loxodonta_africana
ENSXCOG00000019901pabpc1b6079.188ENSMFAG00000028878-9879.188Macaca_fascicularis
ENSXCOG00000019901pabpc1b6079.592ENSMMUG00000009740-9879.592Macaca_mulatta
ENSXCOG00000019901pabpc1b6079.592ENSMMUG00000037681-9879.592Macaca_mulatta
ENSXCOG00000019901pabpc1b6079.592ENSMMUG00000039929-9879.592Macaca_mulatta
ENSXCOG00000019901pabpc1b6079.592ENSMNEG00000037732-9879.592Macaca_nemestrina
ENSXCOG00000019901pabpc1b6079.592ENSMLEG00000027495-9879.592Mandrillus_leucophaeus
ENSXCOG00000019901pabpc1b10085.110ENSMAMG00000004502-10085.266Mastacembelus_armatus
ENSXCOG00000019901pabpc1b10089.905ENSMAMG00000014610pabpc1b10090.221Mastacembelus_armatus
ENSXCOG00000019901pabpc1b10085.423ENSMZEG00005025416pabpc1a10085.580Maylandia_zebra
ENSXCOG00000019901pabpc1b10089.117ENSMZEG00005026745pabpc1b10089.117Maylandia_zebra
ENSXCOG00000019901pabpc1b6079.592ENSMICG00000047642-9879.592Microcebus_murinus
ENSXCOG00000019901pabpc1b9393.333ENSMMOG00000018044pabpc1a10093.333Mola_mola
ENSXCOG00000019901pabpc1b10087.993ENSMMOG00000018009pabpc1b10087.993Mola_mola
ENSXCOG00000019901pabpc1b9871.108ENSMODG00000013156-9871.750Monodelphis_domestica
ENSXCOG00000019901pabpc1b9965.287ENSMODG00000015024-9965.287Monodelphis_domestica
ENSXCOG00000019901pabpc1b10085.197ENSMALG00000013020-10085.878Monopterus_albus
ENSXCOG00000019901pabpc1b10093.092ENSMALG00000006066pabpc1b10093.092Monopterus_albus
ENSXCOG00000019901pabpc1b6081.967ENSNGAG00000012688-9879.082Nannospalax_galili
ENSXCOG00000019901pabpc1b10085.580ENSNBRG00000003068-10085.737Neolamprologus_brichardi
ENSXCOG00000019901pabpc1b10088.959ENSNBRG00000013737pabpc1b10088.959Neolamprologus_brichardi
ENSXCOG00000019901pabpc1b6079.592ENSNLEG00000018128-9879.592Nomascus_leucogenys
ENSXCOG00000019901pabpc1b6079.082ENSODEG00000018540-9879.082Octodon_degus
ENSXCOG00000019901pabpc1b10085.423ENSONIG00000006871-10085.737Oreochromis_niloticus
ENSXCOG00000019901pabpc1b10089.117ENSONIG00000002717pabpc1b10089.117Oreochromis_niloticus
ENSXCOG00000019901pabpc1b6079.592ENSOCUG00000002565-9879.592Oryctolagus_cuniculus
ENSXCOG00000019901pabpc1b10083.201ENSORLG00000003008-10083.201Oryzias_latipes
ENSXCOG00000019901pabpc1b10085.243ENSORLG00000002691pabpc1a10085.243Oryzias_latipes
ENSXCOG00000019901pabpc1b10083.043ENSORLG00020022259-10083.043Oryzias_latipes_hni
ENSXCOG00000019901pabpc1b10085.400ENSORLG00020022398pabpc1a10085.400Oryzias_latipes_hni
ENSXCOG00000019901pabpc1b10085.243ENSORLG00015013633pabpc110085.243Oryzias_latipes_hsok
ENSXCOG00000019901pabpc1b10083.201ENSORLG00015010932-10083.201Oryzias_latipes_hsok
ENSXCOG00000019901pabpc1b10085.714ENSOMEG00000020219pabpc1a10085.871Oryzias_melastigma
ENSXCOG00000019901pabpc1b9387.736ENSOMEG00000013627pabpc1b10087.736Oryzias_melastigma
ENSXCOG00000019901pabpc1b6079.592ENSOGAG00000026047-9879.592Otolemur_garnettii
ENSXCOG00000019901pabpc1b6079.592ENSOGAG00000029513-9879.592Otolemur_garnettii
ENSXCOG00000019901pabpc1b6079.592ENSOARG00000005943-9879.592Ovis_aries
ENSXCOG00000019901pabpc1b6079.592ENSPPAG00000012920-9879.592Pan_paniscus
ENSXCOG00000019901pabpc1b6079.592ENSPPRG00000011804-9879.592Panthera_pardus
ENSXCOG00000019901pabpc1b6079.592ENSPPRG00000011809-9879.592Panthera_pardus
ENSXCOG00000019901pabpc1b6079.592ENSPTRG00000028252-9879.592Pan_troglodytes
ENSXCOG00000019901pabpc1b6079.592ENSPANG00000011549-9879.592Papio_anubis
ENSXCOG00000019901pabpc1b10088.504ENSPKIG00000005676pabpc1b10088.504Paramormyrops_kingsleyae
ENSXCOG00000019901pabpc1b7394.170ENSPMGG00000023134-9794.170Periophthalmus_magnuspinnatus
ENSXCOG00000019901pabpc1b7392.377ENSPMGG00000022487pabpc1a9292.377Periophthalmus_magnuspinnatus
ENSXCOG00000019901pabpc1b9969.243ENSPCIG00000016995-5469.243Phascolarctos_cinereus
ENSXCOG00000019901pabpc1b10084.462ENSPFOG00000010815pabpc1a10084.308Poecilia_formosa
ENSXCOG00000019901pabpc1b10091.956ENSPFOG00000005917pabpc1b10092.271Poecilia_formosa
ENSXCOG00000019901pabpc1b10092.114ENSPLAG00000001388pabpc1b10092.429Poecilia_latipinna
ENSXCOG00000019901pabpc1b10085.737ENSPLAG00000004114pabpc1a10085.893Poecilia_latipinna
ENSXCOG00000019901pabpc1b10085.737ENSPMEG00000001334pabpc1a10085.893Poecilia_mexicana
ENSXCOG00000019901pabpc1b10091.956ENSPMEG00000014399pabpc1b10092.271Poecilia_mexicana
ENSXCOG00000019901pabpc1b10098.026ENSPREG00000010911pabpc1b10098.026Poecilia_reticulata
ENSXCOG00000019901pabpc1b10086.928ENSPREG00000019595pabpc1a9296.947Poecilia_reticulata
ENSXCOG00000019901pabpc1b6079.592ENSPPYG00000020468-9879.592Pongo_abelii
ENSXCOG00000019901pabpc1b6279.592ENSPCAG00000005308-9879.592Procavia_capensis
ENSXCOG00000019901pabpc1b6080.102ENSPCOG00000026349-9880.102Propithecus_coquereli
ENSXCOG00000019901pabpc1b6280.000ENSPVAG00000016117-9880.000Pteropus_vampyrus
ENSXCOG00000019901pabpc1b10089.117ENSPNYG00000012578pabpc1b10089.117Pundamilia_nyererei
ENSXCOG00000019901pabpc1b10085.423ENSPNYG00000005192pabpc1a10085.836Pundamilia_nyererei
ENSXCOG00000019901pabpc1b10085.855ENSPNAG00000028408pabpc1a10085.855Pygocentrus_nattereri
ENSXCOG00000019901pabpc1b10087.874ENSPNAG00000024626pabpc1b10087.874Pygocentrus_nattereri
ENSXCOG00000019901pabpc1b6079.592ENSRBIG00000027173-9879.592Rhinopithecus_bieti
ENSXCOG00000019901pabpc1b9974.150ENSRBIG00000028738-9973.167Rhinopithecus_bieti
ENSXCOG00000019901pabpc1b6079.592ENSRROG00000017404-9879.592Rhinopithecus_roxellana
ENSXCOG00000019901pabpc1b9862.379ENSSHAG00000000511-10062.379Sarcophilus_harrisii
ENSXCOG00000019901pabpc1b10088.959ENSSFOG00015002752-10088.959Scleropages_formosus
ENSXCOG00000019901pabpc1b7379.769ENSSFOG00015019668-9179.769Scleropages_formosus
ENSXCOG00000019901pabpc1b10085.849ENSSFOG00015006662pabpc1a10086.299Scleropages_formosus
ENSXCOG00000019901pabpc1b10085.557ENSSMAG00000010803pabpc1a10085.557Scophthalmus_maximus
ENSXCOG00000019901pabpc1b10088.486ENSSMAG00000006869pabpc1b10088.801Scophthalmus_maximus
ENSXCOG00000019901pabpc1b10088.942ENSSDUG00000011965pabpc1b10088.784Seriola_dumerili
ENSXCOG00000019901pabpc1b10085.737ENSSDUG00000006675pabpc1a10085.893Seriola_dumerili
ENSXCOG00000019901pabpc1b10085.737ENSSLDG00000011661pabpc1a10085.893Seriola_lalandi_dorsalis
ENSXCOG00000019901pabpc1b10090.596ENSSLDG00000014156pabpc1b10090.439Seriola_lalandi_dorsalis
ENSXCOG00000019901pabpc1b10092.434ENSSPAG00000019265pabpc1b10092.434Stegastes_partitus
ENSXCOG00000019901pabpc1b10085.893ENSSPAG00000014453-10085.893Stegastes_partitus
ENSXCOG00000019901pabpc1b6079.592ENSSSCG00000036336-9879.592Sus_scrofa
ENSXCOG00000019901pabpc1b6079.592ENSSSCG00000032167-9879.592Sus_scrofa
ENSXCOG00000019901pabpc1b10084.953ENSTRUG00000011577-10084.796Takifugu_rubripes
ENSXCOG00000019901pabpc1b10087.087ENSTRUG00000003767-10086.772Takifugu_rubripes
ENSXCOG00000019901pabpc1b10082.253ENSTNIG00000013307pabpc1a10082.071Tetraodon_nigroviridis
ENSXCOG00000019901pabpc1b10086.834ENSTNIG00000009153pabpc1b10086.834Tetraodon_nigroviridis
ENSXCOG00000019901pabpc1b6079.592ENSTTRG00000013181-9879.592Tursiops_truncatus
ENSXCOG00000019901pabpc1b6079.592ENSUAMG00000008089-9879.592Ursus_americanus
ENSXCOG00000019901pabpc1b6079.592ENSUMAG00000003364-9879.592Ursus_maritimus
ENSXCOG00000019901pabpc1b9653.595ENSUMAG00000023926-8968.232Ursus_maritimus
ENSXCOG00000019901pabpc1b6178.500ENSVVUG00000015892-9778.500Vulpes_vulpes
ENSXCOG00000019901pabpc1b9946.604ENSXETG00000015439-10046.604Xenopus_tropicalis
ENSXCOG00000019901pabpc1b10092.902ENSXMAG00000003753pabpc1b10092.902Xiphophorus_maculatus
ENSXCOG00000019901pabpc1b10086.185ENSXMAG00000002555pabpc1a10086.342Xiphophorus_maculatus

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