EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXCOG00000020227 (Gene tree)
Gene ID: -
Gene Symbol: blm
Alias: -
Full Name: BLM RecQ like helicase
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Minus strand
Length: 9557 bases
Position: chrKQ557212.1:10015010-10024566
Accession: ZDB-GENE-070702-5
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000027080	HRDC	PF00570.23	2e-14	1	1
ENSXCOP00000027080	BDHCT	PF08072.11	1.8e-18	1	1
ENSXCOP00000027080	DEAD	PF00270.29	3.7e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000027413	-	4140	-	ENSXCOP00000027080	1379 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000020227's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000020227's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000020227	blm	55	61.509	ENSG00000197299	BLM	50	67.828	Homo_sapiens
ENSXCOG00000020227	blm	100	68.417	ENSAPOG00000017966	blm	100	68.961	Acanthochromis_polyacanthus
ENSXCOG00000020227	blm	55	61.381	ENSAMEG00000013843	BLM	55	60.614	Ailuropoda_melanoleuca
ENSXCOG00000020227	blm	100	70.763	ENSACIG00000023762	blm	100	70.601	Amphilophus_citrinellus
ENSXCOG00000020227	blm	100	67.040	ENSAOCG00000003318	blm	100	67.158	Amphiprion_ocellaris
ENSXCOG00000020227	blm	100	68.702	ENSAPEG00000018105	blm	100	68.772	Amphiprion_percula
ENSXCOG00000020227	blm	99	67.762	ENSATEG00000006421	blm	100	67.133	Anabas_testudineus
ENSXCOG00000020227	blm	73	51.101	ENSAPLG00000006878	BLM	69	59.069	Anas_platyrhynchos
ENSXCOG00000020227	blm	58	62.532	ENSACAG00000014275	BLM	84	62.403	Anolis_carolinensis
ENSXCOG00000020227	blm	55	61.460	ENSANAG00000038415	BLM	50	67.828	Aotus_nancymaae
ENSXCOG00000020227	blm	100	69.501	ENSACLG00000020354	blm	100	69.480	Astatotilapia_calliptera
ENSXCOG00000020227	blm	99	52.525	ENSAMXG00000016970	blm	73	69.693	Astyanax_mexicanus
ENSXCOG00000020227	blm	74	50.642	ENSCJAG00000009803	BLM	50	68.033	Callithrix_jacchus
ENSXCOG00000020227	blm	84	61.047	ENSCAFG00000012385	BLM	83	61.047	Canis_familiaris
ENSXCOG00000020227	blm	84	61.047	ENSCAFG00020016111	BLM	92	61.538	Canis_lupus_dingo
ENSXCOG00000020227	blm	55	61.047	ENSCHIG00000010329	BLM	51	71.274	Capra_hircus
ENSXCOG00000020227	blm	55	61.381	ENSTSYG00000012368	BLM	51	67.008	Carlito_syrichta
ENSXCOG00000020227	blm	62	64.799	ENSCAPG00000017976	BLM	77	64.799	Cavia_aperea
ENSXCOG00000020227	blm	81	47.313	ENSCPOG00000001761	BLM	59	58.234	Cavia_porcellus
ENSXCOG00000020227	blm	74	50.507	ENSCCAG00000023069	BLM	51	67.828	Cebus_capucinus
ENSXCOG00000020227	blm	55	61.637	ENSCATG00000040609	BLM	75	67.213	Cercocebus_atys
ENSXCOG00000020227	blm	99	43.904	ENSCLAG00000012111	BLM	59	59.036	Chinchilla_lanigera
ENSXCOG00000020227	blm	55	61.381	ENSCSAG00000017040	BLM	55	61.509	Chlorocebus_sabaeus
ENSXCOG00000020227	blm	74	52.760	ENSCPBG00000025000	BLM	72	65.000	Chrysemys_picta_bellii
ENSXCOG00000020227	blm	55	62.500	ENSCGRG00001024897	Blm	59	59.472	Cricetulus_griseus_chok1gshd
ENSXCOG00000020227	blm	93	64.141	ENSCSEG00000013483	blm	99	63.506	Cynoglossus_semilaevis
ENSXCOG00000020227	blm	76	80.786	ENSCVAG00000017583	blm	97	76.768	Cyprinodon_variegatus
ENSXCOG00000020227	blm	99	55.457	ENSDARG00000077089	blm	100	55.222	Danio_rerio
ENSXCOG00000020227	blm	55	60.409	ENSDNOG00000010159	BLM	54	60.536	Dasypus_novemcinctus
ENSXCOG00000020227	blm	57	59.300	ENSDORG00000011033	Blm	99	52.277	Dipodomys_ordii
ENSXCOG00000020227	blm	77	46.878	ENSEASG00005006727	BLM	54	57.827	Equus_asinus_asinus
ENSXCOG00000020227	blm	54	60.764	ENSECAG00000011405	BLM	55	61.104	Equus_caballus
ENSXCOG00000020227	blm	74	50.139	ENSEEUG00000001434	BLM	56	59.642	Erinaceus_europaeus
ENSXCOG00000020227	blm	99	55.392	ENSELUG00000019098	blm	99	54.558	Esox_lucius
ENSXCOG00000020227	blm	55	61.558	ENSFCAG00000006087	BLM	50	67.280	Felis_catus
ENSXCOG00000020227	blm	76	50.360	ENSFALG00000010981	BLM	67	58.740	Ficedula_albicollis
ENSXCOG00000020227	blm	99	40.259	ENSFDAG00000012658	BLM	56	53.431	Fukomys_damarensis
ENSXCOG00000020227	blm	100	77.982	ENSFHEG00000002553	blm	100	77.135	Fundulus_heteroclitus
ENSXCOG00000020227	blm	99	56.982	ENSGMOG00000016431	blm	98	66.783	Gadus_morhua
ENSXCOG00000020227	blm	100	91.734	ENSGAFG00000001117	blm	100	91.951	Gambusia_affinis
ENSXCOG00000020227	blm	99	64.241	ENSGACG00000010863	blm	100	82.765	Gasterosteus_aculeatus
ENSXCOG00000020227	blm	63	52.452	ENSGAGG00000005383	BLM	79	66.884	Gopherus_agassizii
ENSXCOG00000020227	blm	55	61.253	ENSGGOG00000007710	BLM	75	66.557	Gorilla_gorilla
ENSXCOG00000020227	blm	100	69.480	ENSHBUG00000015943	blm	100	69.550	Haplochromis_burtoni
ENSXCOG00000020227	blm	74	50.462	ENSHGLG00000013231	BLM	62	59.720	Heterocephalus_glaber_female
ENSXCOG00000020227	blm	73	65.247	ENSHCOG00000011455	blm	100	64.820	Hippocampus_comes
ENSXCOG00000020227	blm	73	60.331	ENSIPUG00000000529	blm	73	67.831	Ictalurus_punctatus
ENSXCOG00000020227	blm	54	61.607	ENSSTOG00000005000	BLM	55	61.509	Ictidomys_tridecemlineatus
ENSXCOG00000020227	blm	55	54.082	ENSJJAG00000016322	Blm	73	53.699	Jaculus_jaculus
ENSXCOG00000020227	blm	100	71.459	ENSKMAG00000016608	blm	100	71.842	Kryptolebias_marmoratus
ENSXCOG00000020227	blm	58	74.790	ENSLBEG00000018729	blm	96	74.667	Labrus_bergylta
ENSXCOG00000020227	blm	55	65.696	ENSLACG00000006490	BLM	54	65.526	Latimeria_chalumnae
ENSXCOG00000020227	blm	99	50.233	ENSLOCG00000014302	blm	86	67.515	Lepisosteus_oculatus
ENSXCOG00000020227	blm	55	61.637	ENSMFAG00000042982	BLM	75	66.885	Macaca_fascicularis
ENSXCOG00000020227	blm	55	61.637	ENSMMUG00000019526	BLM	75	66.885	Macaca_mulatta
ENSXCOG00000020227	blm	55	61.381	ENSMNEG00000031251	BLM	75	66.557	Macaca_nemestrina
ENSXCOG00000020227	blm	54	58.003	ENSMLEG00000032934	BLM	54	58.003	Mandrillus_leucophaeus
ENSXCOG00000020227	blm	99	67.021	ENSMAMG00000008726	blm	99	67.139	Mastacembelus_armatus
ENSXCOG00000020227	blm	100	68.922	ENSMZEG00005022323	blm	100	68.710	Maylandia_zebra
ENSXCOG00000020227	blm	55	61.509	ENSMAUG00000008953	Blm	55	61.765	Mesocricetus_auratus
ENSXCOG00000020227	blm	55	62.214	ENSMICG00000034442	BLM	50	67.623	Microcebus_murinus
ENSXCOG00000020227	blm	55	62.516	ENSMOCG00000016367	Blm	55	62.644	Microtus_ochrogaster
ENSXCOG00000020227	blm	100	65.190	ENSMMOG00000006959	blm	100	64.557	Mola_mola
ENSXCOG00000020227	blm	55	61.118	ENSMODG00000019449	BLM	54	61.245	Monodelphis_domestica
ENSXCOG00000020227	blm	100	67.503	ENSMALG00000007323	blm	100	67.015	Monopterus_albus
ENSXCOG00000020227	blm	55	61.677	MGP_CAROLIEiJ_G0029907	Blm	55	61.161	Mus_caroli
ENSXCOG00000020227	blm	55	61.856	ENSMUSG00000030528	Blm	54	61.469	Mus_musculus
ENSXCOG00000020227	blm	55	62.371	MGP_PahariEiJ_G0013129	Blm	55	61.727	Mus_pahari
ENSXCOG00000020227	blm	55	62.033	MGP_SPRETEiJ_G0031009	Blm	55	61.647	Mus_spretus
ENSXCOG00000020227	blm	73	51.270	ENSMLUG00000014697	BLM	55	60.483	Myotis_lucifugus
ENSXCOG00000020227	blm	100	68.878	ENSNBRG00000019702	blm	100	68.900	Neolamprologus_brichardi
ENSXCOG00000020227	blm	55	59.079	ENSNLEG00000012087	BLM	74	57.995	Nomascus_leucogenys
ENSXCOG00000020227	blm	50	61.367	ENSOPRG00000011667	BLM	51	61.119	Ochotona_princeps
ENSXCOG00000020227	blm	73	47.954	ENSODEG00000015373	BLM	79	53.688	Octodon_degus
ENSXCOG00000020227	blm	100	66.185	ENSONIG00000015193	blm	100	66.667	Oreochromis_niloticus
ENSXCOG00000020227	blm	53	61.479	ENSOANG00000009316	-	100	60.903	Ornithorhynchus_anatinus
ENSXCOG00000020227	blm	84	60.825	ENSOCUG00000013969	BLM	61	60.567	Oryctolagus_cuniculus
ENSXCOG00000020227	blm	100	71.045	ENSORLG00000008110	blm	100	70.410	Oryzias_latipes
ENSXCOG00000020227	blm	100	70.833	ENSORLG00020004812	blm	100	70.198	Oryzias_latipes_hni
ENSXCOG00000020227	blm	100	70.763	ENSORLG00015018640	blm	100	71.319	Oryzias_latipes_hsok
ENSXCOG00000020227	blm	100	68.082	ENSOMEG00000023545	blm	100	68.011	Oryzias_melastigma
ENSXCOG00000020227	blm	55	60.997	ENSOARG00000012875	BLM	55	60.486	Ovis_aries
ENSXCOG00000020227	blm	55	61.765	ENSPPAG00000032173	BLM	50	68.033	Pan_paniscus
ENSXCOG00000020227	blm	55	61.303	ENSPPRG00000002471	BLM	50	67.280	Panthera_pardus
ENSXCOG00000020227	blm	55	60.792	ENSPTIG00000016168	BLM	50	67.073	Panthera_tigris_altaica
ENSXCOG00000020227	blm	54	61.204	ENSPTRG00000007460	BLM	50	67.967	Pan_troglodytes
ENSXCOG00000020227	blm	55	61.509	ENSPANG00000018572	BLM	75	66.885	Papio_anubis
ENSXCOG00000020227	blm	69	66.126	ENSPMGG00000006629	blm	100	66.836	Periophthalmus_magnuspinnatus
ENSXCOG00000020227	blm	77	49.225	ENSPCIG00000006609	BLM	58	58.167	Phascolarctos_cinereus
ENSXCOG00000020227	blm	100	89.857	ENSPFOG00000005059	blm	100	89.857	Poecilia_formosa
ENSXCOG00000020227	blm	100	89.714	ENSPLAG00000017344	blm	100	89.714	Poecilia_latipinna
ENSXCOG00000020227	blm	100	91.643	ENSPMEG00000000321	blm	100	91.643	Poecilia_mexicana
ENSXCOG00000020227	blm	100	90.364	ENSPREG00000007715	blm	100	90.079	Poecilia_reticulata
ENSXCOG00000020227	blm	57	58.072	ENSPCAG00000008960	BLM	59	57.590	Procavia_capensis
ENSXCOG00000020227	blm	77	44.803	ENSPCOG00000000439	BLM	53	52.739	Propithecus_coquereli
ENSXCOG00000020227	blm	60	67.110	ENSPVAG00000011642	BLM	62	67.110	Pteropus_vampyrus
ENSXCOG00000020227	blm	100	64.986	ENSPNYG00000010956	blm	100	64.606	Pundamilia_nyererei
ENSXCOG00000020227	blm	100	54.949	ENSPNAG00000011714	blm	100	55.191	Pygocentrus_nattereri
ENSXCOG00000020227	blm	55	61.282	ENSRNOG00000011213	Blm	55	61.410	Rattus_norvegicus
ENSXCOG00000020227	blm	73	50.233	ENSRBIG00000029656	BLM	75	66.557	Rhinopithecus_bieti
ENSXCOG00000020227	blm	59	61.716	ENSRROG00000037871	BLM	75	66.557	Rhinopithecus_roxellana
ENSXCOG00000020227	blm	64	50.576	ENSSBOG00000030957	BLM	50	67.623	Saimiri_boliviensis_boliviensis
ENSXCOG00000020227	blm	58	57.412	ENSSHAG00000007988	BLM	61	57.494	Sarcophilus_harrisii
ENSXCOG00000020227	blm	74	59.643	ENSSFOG00015015462	blm	80	58.818	Scleropages_formosus
ENSXCOG00000020227	blm	100	65.684	ENSSMAG00000001120	blm	100	65.895	Scophthalmus_maximus
ENSXCOG00000020227	blm	100	67.760	ENSSDUG00000010955	blm	100	66.853	Seriola_dumerili
ENSXCOG00000020227	blm	100	67.156	ENSSLDG00000000634	blm	100	66.247	Seriola_lalandi_dorsalis
ENSXCOG00000020227	blm	55	56.250	ENSSARG00000006398	BLM	59	56.138	Sorex_araneus
ENSXCOG00000020227	blm	73	51.464	ENSSPUG00000000013	BLM	73	59.030	Sphenodon_punctatus
ENSXCOG00000020227	blm	99	70.601	ENSSPAG00000013999	blm	99	70.268	Stegastes_partitus
ENSXCOG00000020227	blm	57	61.708	ENSSSCG00000001816	BLM	59	61.295	Sus_scrofa
ENSXCOG00000020227	blm	77	44.194	ENSTGUG00000009959	-	82	52.415	Taeniopygia_guttata
ENSXCOG00000020227	blm	99	62.588	ENSTRUG00000019860	blm	99	62.316	Takifugu_rubripes
ENSXCOG00000020227	blm	99	62.062	ENSTNIG00000019246	blm	99	62.333	Tetraodon_nigroviridis
ENSXCOG00000020227	blm	54	61.697	ENSTTRG00000016386	BLM	55	61.183	Tursiops_truncatus
ENSXCOG00000020227	blm	68	53.750	ENSUMAG00000009105	BLM	93	64.765	Ursus_maritimus
ENSXCOG00000020227	blm	55	57.746	ENSVPAG00000000085	BLM	55	57.234	Vicugna_pacos
ENSXCOG00000020227	blm	78	69.919	ENSVVUG00000006402	BLM	85	69.919	Vulpes_vulpes
ENSXCOG00000020227	blm	100	96.710	ENSXMAG00000002951	blm	100	96.710	Xiphophorus_maculatus