EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000020244 (Gene tree)
Gene ID: -
Gene Symbol: zgc:162879
Alias: -
Full Name: zgc:162879
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Plus strand
Length: 6383 bases
Position: chrKQ557212.1:10238017-10244399
Accession: ZDB-GENE-070424-92
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000027119	MMR_HSR1	PF01926.23	1.7e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000027452	-	1374	-	ENSXCOP00000027119	457 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000020244's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000020244's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000020244	zgc:162879	93	38.085	ENSXCOG00000005178	rasef	75	37.500

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000020244	zgc:162879	100	67.913	ENSAPOG00000008539	zgc:162879	77	67.913	Acanthochromis_polyacanthus
ENSXCOG00000020244	zgc:162879	100	70.238	ENSACIG00000023717	zgc:162879	77	69.841	Amphilophus_citrinellus
ENSXCOG00000020244	zgc:162879	100	66.865	ENSAOCG00000006210	zgc:162879	79	66.865	Amphiprion_ocellaris
ENSXCOG00000020244	zgc:162879	100	68.898	ENSAPEG00000017489	zgc:162879	79	67.063	Amphiprion_percula
ENSXCOG00000020244	zgc:162879	100	69.548	ENSATEG00000006102	zgc:162879	77	69.548	Anabas_testudineus
ENSXCOG00000020244	zgc:162879	100	68.056	ENSACLG00000021066	zgc:162879	77	68.056	Astatotilapia_calliptera
ENSXCOG00000020244	zgc:162879	100	55.814	ENSAMXG00000007430	zgc:162879	77	55.814	Astyanax_mexicanus
ENSXCOG00000020244	zgc:162879	99	56.224	ENSCSEG00000013699	zgc:162879	81	56.224	Cynoglossus_semilaevis
ENSXCOG00000020244	zgc:162879	99	71.287	ENSCVAG00000014510	zgc:162879	77	71.287	Cyprinodon_variegatus
ENSXCOG00000020244	zgc:162879	99	57.367	ENSDARG00000074163	zgc:162879	76	57.367	Danio_rerio
ENSXCOG00000020244	zgc:162879	99	58.405	ENSELUG00000019483	zgc:162879	82	58.285	Esox_lucius
ENSXCOG00000020244	zgc:162879	99	68.986	ENSFHEG00000022549	zgc:162879	100	68.986	Fundulus_heteroclitus
ENSXCOG00000020244	zgc:162879	100	85.913	ENSGAFG00000001313	zgc:162879	77	85.516	Gambusia_affinis
ENSXCOG00000020244	zgc:162879	100	61.152	ENSGACG00000010798	zgc:162879	77	61.152	Gasterosteus_aculeatus
ENSXCOG00000020244	zgc:162879	100	67.191	ENSHBUG00000016335	zgc:162879	77	67.191	Haplochromis_burtoni
ENSXCOG00000020244	zgc:162879	88	55.981	ENSHCOG00000012026	zgc:162879	75	54.688	Hippocampus_comes
ENSXCOG00000020244	zgc:162879	100	66.533	ENSKMAG00000016246	zgc:162879	80	67.134	Kryptolebias_marmoratus
ENSXCOG00000020244	zgc:162879	99	65.618	ENSLBEG00000006690	zgc:162879	76	65.618	Labrus_bergylta
ENSXCOG00000020244	zgc:162879	94	53.974	ENSLACG00000014082	-	60	53.974	Latimeria_chalumnae
ENSXCOG00000020244	zgc:162879	100	52.885	ENSLOCG00000014347	zgc:162879	76	52.885	Lepisosteus_oculatus
ENSXCOG00000020244	zgc:162879	99	72.050	ENSMAMG00000008875	zgc:162879	76	72.050	Mastacembelus_armatus
ENSXCOG00000020244	zgc:162879	100	67.126	ENSMZEG00005022256	zgc:162879	77	67.126	Maylandia_zebra
ENSXCOG00000020244	zgc:162879	94	61.181	ENSNBRG00000020110	zgc:162879	73	61.181	Neolamprologus_brichardi
ENSXCOG00000020244	zgc:162879	100	65.465	ENSONIG00000015165	zgc:162879	75	65.465	Oreochromis_niloticus
ENSXCOG00000020244	zgc:162879	99	58.812	ENSORLG00015017960	zgc:162879	76	58.812	Oryzias_latipes_hsok
ENSXCOG00000020244	zgc:162879	88	59.903	ENSPKIG00000020661	zgc:162879	76	54.825	Paramormyrops_kingsleyae
ENSXCOG00000020244	zgc:162879	100	83.929	ENSPFOG00000006354	zgc:162879	76	83.929	Poecilia_formosa
ENSXCOG00000020244	zgc:162879	100	83.730	ENSPLAG00000020643	zgc:162879	76	83.730	Poecilia_latipinna
ENSXCOG00000020244	zgc:162879	100	83.135	ENSPMEG00000014713	zgc:162879	82	83.135	Poecilia_mexicana
ENSXCOG00000020244	zgc:162879	94	64.842	ENSPNYG00000010530	zgc:162879	75	64.842	Pundamilia_nyererei
ENSXCOG00000020244	zgc:162879	99	55.620	ENSPNAG00000012022	zgc:162879	77	55.620	Pygocentrus_nattereri
ENSXCOG00000020244	zgc:162879	87	51.860	ENSSFOG00015023774	zgc:162879	70	51.860	Scleropages_formosus
ENSXCOG00000020244	zgc:162879	100	65.815	ENSSMAG00000001513	zgc:162879	78	65.107	Scophthalmus_maximus
ENSXCOG00000020244	zgc:162879	100	69.548	ENSSDUG00000011478	zgc:162879	77	69.548	Seriola_dumerili
ENSXCOG00000020244	zgc:162879	100	69.548	ENSSLDG00000000877	zgc:162879	77	69.548	Seriola_lalandi_dorsalis
ENSXCOG00000020244	zgc:162879	100	68.267	ENSSPAG00000010598	zgc:162879	75	68.267	Stegastes_partitus
ENSXCOG00000020244	zgc:162879	100	62.741	ENSTNIG00000019239	zgc:162879	73	62.741	Tetraodon_nigroviridis
ENSXCOG00000020244	zgc:162879	98	40.454	ENSXETG00000015491	rasef	72	40.454	Xenopus_tropicalis
ENSXCOG00000020244	zgc:162879	100	89.683	ENSXMAG00000002846	zgc:162879	83	89.683	Xiphophorus_maculatus