EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000020384 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: cb445|cb789|sb:cb445|wu:fa06c04|wu:fb16f02
Full Name: -
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Plus strand
Length: 4170 bases
Position: chrKQ557212.1:12827604-12831773
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000027294	MMR_HSR1	PF01926.23	1.4e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000027627	-	543	-	ENSXCOP00000027294	180 (aa)	-	UPI000293B0DD

Gene Model

Click here to download ENSXCOG00000020384's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000020384's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000020384	-	98	81.921	ENSXCOG00000004139	arf2b	98	81.921
ENSXCOG00000020384	-	91	47.239	ENSXCOG00000005902	arl3	77	47.239
ENSXCOG00000020384	-	100	79.444	ENSXCOG00000015162	-	100	79.444
ENSXCOG00000020384	-	93	44.886	ENSXCOG00000011539	arl8	80	44.886
ENSXCOG00000020384	-	91	46.341	ENSXCOG00000006377	arl2	89	46.341
ENSXCOG00000020384	-	91	44.706	ENSXCOG00000007236	arl4aa	85	44.706
ENSXCOG00000020384	-	97	81.034	ENSXCOG00000001487	-	95	83.735
ENSXCOG00000020384	-	92	34.337	ENSXCOG00000004543	arl8bb	89	34.337
ENSXCOG00000020384	-	87	33.121	ENSXCOG00000013402	arl8ba	95	33.121
ENSXCOG00000020384	-	91	45.614	ENSXCOG00000003923	-	84	45.614
ENSXCOG00000020384	-	85	43.506	ENSXCOG00000011060	arl11	90	43.506
ENSXCOG00000020384	-	98	44.633	ENSXCOG00000017380	arl5c	98	44.633
ENSXCOG00000020384	-	95	45.763	ENSXCOG00000016119	arl4cb	89	45.763
ENSXCOG00000020384	-	96	82.081	ENSXCOG00000019704	arf3b	97	82.081
ENSXCOG00000020384	-	75	34.932	ENSXCOG00000009364	arfrp1	73	34.932
ENSXCOG00000020384	-	92	47.024	ENSXCOG00000002882	-	93	47.024
ENSXCOG00000020384	-	95	43.353	ENSXCOG00000003337	arl3l2	93	43.353
ENSXCOG00000020384	-	53	34.737	ENSXCOG00000006154	-	64	34.737
ENSXCOG00000020384	-	87	42.169	ENSXCOG00000003892	arl4d	81	42.169
ENSXCOG00000020384	-	92	31.325	ENSXCOG00000016886	arl8a	88	31.325
ENSXCOG00000020384	-	60	31.356	ENSXCOG00000018683	zgc:101559	50	31.356
ENSXCOG00000020384	-	97	81.609	ENSXCOG00000016687	-	95	81.609

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000020384	-	99	86.034	ENSG00000004059	ARF5	99	86.755	Homo_sapiens
ENSXCOG00000020384	-	100	91.667	ENSAPOG00000000667	-	100	91.667	Acanthochromis_polyacanthus
ENSXCOG00000020384	-	99	86.034	ENSAMEG00000004635	ARF5	99	86.034	Ailuropoda_melanoleuca
ENSXCOG00000020384	-	98	69.492	ENSACIG00000014610	zgc:110286	98	69.492	Amphilophus_citrinellus
ENSXCOG00000020384	-	100	93.889	ENSACIG00000000467	-	100	93.889	Amphilophus_citrinellus
ENSXCOG00000020384	-	99	89.944	ENSACIG00000005843	arf5	99	89.944	Amphilophus_citrinellus
ENSXCOG00000020384	-	100	91.111	ENSAOCG00000008113	-	100	91.111	Amphiprion_ocellaris
ENSXCOG00000020384	-	100	88.333	ENSAOCG00000023329	arf5	100	88.333	Amphiprion_ocellaris
ENSXCOG00000020384	-	100	88.333	ENSAPEG00000024614	arf5	100	88.333	Amphiprion_percula
ENSXCOG00000020384	-	100	91.111	ENSAPEG00000003087	-	100	91.111	Amphiprion_percula
ENSXCOG00000020384	-	99	89.385	ENSATEG00000003053	ARF5	99	89.385	Anabas_testudineus
ENSXCOG00000020384	-	100	92.778	ENSATEG00000001302	-	100	92.778	Anabas_testudineus
ENSXCOG00000020384	-	99	86.034	ENSANAG00000026446	ARF5	99	86.034	Aotus_nancymaae
ENSXCOG00000020384	-	99	90.503	ENSACLG00000005705	arf5	99	90.503	Astatotilapia_calliptera
ENSXCOG00000020384	-	100	92.778	ENSACLG00000025604	-	100	92.778	Astatotilapia_calliptera
ENSXCOG00000020384	-	99	90.503	ENSAMXG00000038224	-	99	90.503	Astyanax_mexicanus
ENSXCOG00000020384	-	99	89.944	ENSAMXG00000031774	ARF5	99	89.944	Astyanax_mexicanus
ENSXCOG00000020384	-	99	91.061	ENSAMXG00000004249	-	99	91.061	Astyanax_mexicanus
ENSXCOG00000020384	-	99	87.709	ENSAMXG00000031467	arf4a	99	87.709	Astyanax_mexicanus
ENSXCOG00000020384	-	99	86.034	ENSBTAG00000009366	ARF5	99	86.034	Bos_taurus
ENSXCOG00000020384	-	99	86.592	WBGene00000183	arf-3	99	86.592	Caenorhabditis_elegans
ENSXCOG00000020384	-	99	86.034	ENSCJAG00000017604	ARF5	99	86.034	Callithrix_jacchus
ENSXCOG00000020384	-	99	72.300	ENSCAFG00020021629	ARF5	99	72.300	Canis_lupus_dingo
ENSXCOG00000020384	-	99	86.034	ENSCHIG00000018906	ARF5	99	86.034	Capra_hircus
ENSXCOG00000020384	-	99	85.000	ENSCPOG00000006239	ARF5	99	85.000	Cavia_porcellus
ENSXCOG00000020384	-	99	86.034	ENSCCAG00000027943	-	99	86.034	Cebus_capucinus
ENSXCOG00000020384	-	99	86.034	ENSCATG00000010217	ARF5	99	86.034	Cercocebus_atys
ENSXCOG00000020384	-	99	86.034	ENSCLAG00000007930	ARF5	99	86.034	Chinchilla_lanigera
ENSXCOG00000020384	-	99	86.034	ENSCSAG00000010208	ARF5	99	86.034	Chlorocebus_sabaeus
ENSXCOG00000020384	-	100	75.000	ENSCING00000004846	-	100	75.000	Ciona_intestinalis
ENSXCOG00000020384	-	100	73.077	ENSCSAVG00000001959	-	100	73.077	Ciona_savignyi
ENSXCOG00000020384	-	89	85.625	ENSCANG00000037234	ARF5	98	85.625	Colobus_angolensis_palliatus
ENSXCOG00000020384	-	99	86.034	ENSCGRG00001024919	Arf5	99	86.034	Cricetulus_griseus_chok1gshd
ENSXCOG00000020384	-	99	82.682	ENSCSEG00000006004	arf5	99	82.682	Cynoglossus_semilaevis
ENSXCOG00000020384	-	99	90.503	ENSCVAG00000007314	-	99	90.503	Cyprinodon_variegatus
ENSXCOG00000020384	-	99	90.503	ENSCVAG00000009124	ARF5	99	90.503	Cyprinodon_variegatus
ENSXCOG00000020384	-	100	96.667	ENSCVAG00000011381	-	100	96.667	Cyprinodon_variegatus
ENSXCOG00000020384	-	99	71.111	ENSDARG00000074210	ARF5	88	71.111	Danio_rerio
ENSXCOG00000020384	-	99	90.503	ENSDARG00000113899	zgc:77650	99	90.503	Danio_rerio
ENSXCOG00000020384	-	99	87.709	ENSDARG00000045989	arf4a	99	87.709	Danio_rerio
ENSXCOG00000020384	-	99	91.061	ENSDARG00000070472	arf5	99	91.061	Danio_rerio
ENSXCOG00000020384	-	99	86.034	ENSDORG00000000325	Arf5	99	86.034	Dipodomys_ordii
ENSXCOG00000020384	-	99	84.916	FBgn0013749	Arf102F	99	84.916	Drosophila_melanogaster
ENSXCOG00000020384	-	97	82.759	ENSETEG00000009275	ARF5	99	82.759	Echinops_telfairi
ENSXCOG00000020384	-	99	83.799	ENSEBUG00000014420	-	99	83.799	Eptatretus_burgeri
ENSXCOG00000020384	-	99	71.508	ENSEBUG00000004484	-	99	71.508	Eptatretus_burgeri
ENSXCOG00000020384	-	99	72.626	ENSELUG00000014428	arf4	99	72.626	Esox_lucius
ENSXCOG00000020384	-	99	86.034	ENSFCAG00000005482	ARF5	99	86.034	Felis_catus
ENSXCOG00000020384	-	99	89.944	ENSFHEG00000023119	arf5	99	89.944	Fundulus_heteroclitus
ENSXCOG00000020384	-	99	84.358	ENSGMOG00000019109	-	99	84.358	Gadus_morhua
ENSXCOG00000020384	-	99	84.916	ENSGMOG00000008747	arf5	99	84.916	Gadus_morhua
ENSXCOG00000020384	-	100	100.000	ENSGAFG00000005163	-	100	100.000	Gambusia_affinis
ENSXCOG00000020384	-	99	90.503	ENSGAFG00000018703	arf5	99	90.503	Gambusia_affinis
ENSXCOG00000020384	-	99	89.944	ENSGACG00000000686	arf5	99	89.944	Gasterosteus_aculeatus
ENSXCOG00000020384	-	100	87.778	ENSGACG00000012500	-	100	87.778	Gasterosteus_aculeatus
ENSXCOG00000020384	-	99	86.592	ENSGAGG00000000231	ARF5	99	86.592	Gopherus_agassizii
ENSXCOG00000020384	-	99	86.034	ENSGGOG00000016749	ARF5	99	86.034	Gorilla_gorilla
ENSXCOG00000020384	-	99	90.503	ENSHBUG00000008546	arf5	99	90.503	Haplochromis_burtoni
ENSXCOG00000020384	-	100	92.778	ENSHBUG00000011041	-	100	92.778	Haplochromis_burtoni
ENSXCOG00000020384	-	99	86.034	ENSHGLG00000007494	ARF5	99	86.034	Heterocephalus_glaber_female
ENSXCOG00000020384	-	99	84.916	ENSHGLG00100006040	ARF5	60	84.916	Heterocephalus_glaber_male
ENSXCOG00000020384	-	99	86.592	ENSHCOG00000015577	-	100	86.592	Hippocampus_comes
ENSXCOG00000020384	-	99	71.508	ENSIPUG00000006913	-	70	71.508	Ictalurus_punctatus
ENSXCOG00000020384	-	99	87.709	ENSIPUG00000007016	arf4	99	87.709	Ictalurus_punctatus
ENSXCOG00000020384	-	99	89.944	ENSIPUG00000004215	arf5	99	89.944	Ictalurus_punctatus
ENSXCOG00000020384	-	99	89.944	ENSIPUG00000004159	Arf5	99	89.944	Ictalurus_punctatus
ENSXCOG00000020384	-	99	86.034	ENSSTOG00000002104	ARF5	99	86.034	Ictidomys_tridecemlineatus
ENSXCOG00000020384	-	99	86.034	ENSJJAG00000005105	Arf5	99	86.034	Jaculus_jaculus
ENSXCOG00000020384	-	100	95.000	ENSKMAG00000012816	-	100	95.000	Kryptolebias_marmoratus
ENSXCOG00000020384	-	99	87.709	ENSLBEG00000026532	arf5	99	87.709	Labrus_bergylta
ENSXCOG00000020384	-	99	84.831	ENSLBEG00000012002	-	98	84.831	Labrus_bergylta
ENSXCOG00000020384	-	99	86.034	ENSLAFG00000011469	ARF5	99	86.034	Loxodonta_africana
ENSXCOG00000020384	-	99	86.034	ENSMFAG00000019772	ARF5	99	86.034	Macaca_fascicularis
ENSXCOG00000020384	-	99	86.034	ENSMMUG00000046381	ARF5	99	86.034	Macaca_mulatta
ENSXCOG00000020384	-	99	86.034	ENSMNEG00000040893	ARF5	99	86.034	Macaca_nemestrina
ENSXCOG00000020384	-	99	88.827	ENSMAMG00000021160	arf5	99	88.827	Mastacembelus_armatus
ENSXCOG00000020384	-	100	91.667	ENSMAMG00000008223	-	100	91.667	Mastacembelus_armatus
ENSXCOG00000020384	-	99	90.503	ENSMZEG00005015033	arf5	66	90.503	Maylandia_zebra
ENSXCOG00000020384	-	88	91.772	ENSMZEG00005019741	-	94	91.772	Maylandia_zebra
ENSXCOG00000020384	-	99	86.034	ENSMAUG00000014825	Arf5	99	86.034	Mesocricetus_auratus
ENSXCOG00000020384	-	99	86.034	ENSMICG00000000091	ARF5	99	86.034	Microcebus_murinus
ENSXCOG00000020384	-	99	86.034	ENSMOCG00000022861	Arf5	99	86.034	Microtus_ochrogaster
ENSXCOG00000020384	-	99	85.475	ENSMODG00000015229	ARF5	99	85.475	Monodelphis_domestica
ENSXCOG00000020384	-	99	70.391	ENSMALG00000022638	zgc:110286	100	70.391	Monopterus_albus
ENSXCOG00000020384	-	100	92.778	ENSMALG00000006020	-	100	92.778	Monopterus_albus
ENSXCOG00000020384	-	99	89.385	ENSMALG00000010117	-	99	89.385	Monopterus_albus
ENSXCOG00000020384	-	99	86.034	MGP_CAROLIEiJ_G0028156	Arf5	99	86.034	Mus_caroli
ENSXCOG00000020384	-	99	86.034	ENSMUSG00000020440	Arf5	99	86.034	Mus_musculus
ENSXCOG00000020384	-	99	86.034	MGP_PahariEiJ_G0021914	Arf5	99	86.034	Mus_pahari
ENSXCOG00000020384	-	99	86.034	MGP_SPRETEiJ_G0029156	Arf5	99	86.034	Mus_spretus
ENSXCOG00000020384	-	99	86.034	ENSMPUG00000006675	ARF5	99	86.034	Mustela_putorius_furo
ENSXCOG00000020384	-	99	86.034	ENSMLUG00000017122	ARF5	99	86.034	Myotis_lucifugus
ENSXCOG00000020384	-	99	86.034	ENSNGAG00000011743	Arf5	99	86.034	Nannospalax_galili
ENSXCOG00000020384	-	99	90.503	ENSNBRG00000018854	arf5	99	90.503	Neolamprologus_brichardi
ENSXCOG00000020384	-	99	86.034	ENSODEG00000011800	ARF5	99	86.034	Octodon_degus
ENSXCOG00000020384	-	99	90.503	ENSONIG00000007594	arf5	99	90.503	Oreochromis_niloticus
ENSXCOG00000020384	-	100	92.778	ENSONIG00000014890	-	100	92.778	Oreochromis_niloticus
ENSXCOG00000020384	-	99	86.034	ENSOCUG00000024365	ARF5	99	86.034	Oryctolagus_cuniculus
ENSXCOG00000020384	-	100	91.667	ENSORLG00020001755	-	100	91.667	Oryzias_latipes_hni
ENSXCOG00000020384	-	100	91.667	ENSOMEG00000000211	-	65	91.667	Oryzias_melastigma
ENSXCOG00000020384	-	99	89.944	ENSOMEG00000020821	ARF5	99	89.944	Oryzias_melastigma
ENSXCOG00000020384	-	99	86.034	ENSOGAG00000013336	ARF5	99	86.034	Otolemur_garnettii
ENSXCOG00000020384	-	99	86.034	ENSPPAG00000037755	ARF5	99	86.034	Pan_paniscus
ENSXCOG00000020384	-	99	86.034	ENSPPRG00000004674	ARF5	99	86.034	Panthera_pardus
ENSXCOG00000020384	-	99	86.034	ENSPTRG00000019651	ARF5	99	86.034	Pan_troglodytes
ENSXCOG00000020384	-	99	86.034	ENSPANG00000032970	ARF5	99	86.034	Papio_anubis
ENSXCOG00000020384	-	99	89.385	ENSPKIG00000025381	-	99	89.385	Paramormyrops_kingsleyae
ENSXCOG00000020384	-	100	90.000	ENSPKIG00000013814	-	100	90.000	Paramormyrops_kingsleyae
ENSXCOG00000020384	-	99	86.592	ENSPKIG00000025349	arf4a	99	86.592	Paramormyrops_kingsleyae
ENSXCOG00000020384	-	99	85.475	ENSPMGG00000009985	-	99	85.475	Periophthalmus_magnuspinnatus
ENSXCOG00000020384	-	99	86.034	ENSPEMG00000021476	Arf5	99	86.034	Peromyscus_maniculatus_bairdii
ENSXCOG00000020384	-	99	79.330	ENSPMAG00000009600	arf4a	100	79.330	Petromyzon_marinus
ENSXCOG00000020384	-	99	90.503	ENSPFOG00000015817	arf5	99	90.503	Poecilia_formosa
ENSXCOG00000020384	-	100	99.448	ENSPFOG00000017992	-	100	99.448	Poecilia_formosa
ENSXCOG00000020384	-	100	100.000	ENSPLAG00000015630	-	100	100.000	Poecilia_latipinna
ENSXCOG00000020384	-	99	90.503	ENSPLAG00000006742	arf5	99	90.503	Poecilia_latipinna
ENSXCOG00000020384	-	99	90.503	ENSPMEG00000009605	arf5	99	90.503	Poecilia_mexicana
ENSXCOG00000020384	-	100	100.000	ENSPMEG00000004624	-	100	100.000	Poecilia_mexicana
ENSXCOG00000020384	-	99	86.034	ENSPCOG00000027640	ARF5	99	86.034	Propithecus_coquereli
ENSXCOG00000020384	-	99	86.034	ENSPVAG00000013940	ARF5	99	86.034	Pteropus_vampyrus
ENSXCOG00000020384	-	99	90.503	ENSPNYG00000001663	arf5	99	90.503	Pundamilia_nyererei
ENSXCOG00000020384	-	100	92.778	ENSPNYG00000004931	-	100	92.778	Pundamilia_nyererei
ENSXCOG00000020384	-	99	90.503	ENSPNAG00000024427	-	99	90.503	Pygocentrus_nattereri
ENSXCOG00000020384	-	99	75.978	ENSPNAG00000005054	-	99	75.978	Pygocentrus_nattereri
ENSXCOG00000020384	-	99	71.508	ENSPNAG00000004475	-	99	71.508	Pygocentrus_nattereri
ENSXCOG00000020384	-	99	86.592	ENSPNAG00000004745	arf4a	99	86.592	Pygocentrus_nattereri
ENSXCOG00000020384	-	99	86.034	ENSRNOG00000007806	Arf5	99	86.034	Rattus_norvegicus
ENSXCOG00000020384	-	99	86.034	ENSRBIG00000039868	ARF5	99	86.034	Rhinopithecus_bieti
ENSXCOG00000020384	-	99	86.034	ENSRROG00000041157	ARF5	99	86.034	Rhinopithecus_roxellana
ENSXCOG00000020384	-	99	86.034	ENSSBOG00000021669	ARF5	99	86.034	Saimiri_boliviensis_boliviensis
ENSXCOG00000020384	-	99	86.034	ENSSHAG00000015053	ARF5	99	86.034	Sarcophilus_harrisii
ENSXCOG00000020384	-	99	79.888	ENSSFOG00015007701	-	99	79.888	Scleropages_formosus
ENSXCOG00000020384	-	99	91.620	ENSSFOG00015020707	ARF5	99	91.620	Scleropages_formosus
ENSXCOG00000020384	-	100	90.000	ENSSMAG00000004541	-	100	90.000	Scophthalmus_maximus
ENSXCOG00000020384	-	99	88.268	ENSSMAG00000011361	arf5	99	88.268	Scophthalmus_maximus
ENSXCOG00000020384	-	99	89.385	ENSSDUG00000005105	arf5	99	89.385	Seriola_dumerili
ENSXCOG00000020384	-	99	89.385	ENSSLDG00000017188	arf5	99	89.385	Seriola_lalandi_dorsalis
ENSXCOG00000020384	-	99	88.268	ENSSPAG00000014434	arf5	99	88.268	Stegastes_partitus
ENSXCOG00000020384	-	100	92.778	ENSSPAG00000022680	-	100	92.778	Stegastes_partitus
ENSXCOG00000020384	-	99	86.034	ENSSSCG00000016593	ARF5	99	86.034	Sus_scrofa
ENSXCOG00000020384	-	99	85.475	ENSTRUG00000025462	-	100	85.475	Takifugu_rubripes
ENSXCOG00000020384	-	99	88.827	ENSTNIG00000003348	arf5	100	88.827	Tetraodon_nigroviridis
ENSXCOG00000020384	-	99	83.240	ENSTNIG00000017954	-	100	83.240	Tetraodon_nigroviridis
ENSXCOG00000020384	-	89	86.957	ENSTTRG00000006043	ARF5	99	86.957	Tursiops_truncatus
ENSXCOG00000020384	-	99	86.034	ENSUAMG00000012982	ARF5	99	86.034	Ursus_americanus
ENSXCOG00000020384	-	99	86.034	ENSVVUG00000007062	ARF5	99	86.034	Vulpes_vulpes
ENSXCOG00000020384	-	99	90.503	ENSXMAG00000015306	arf5	99	90.503	Xiphophorus_maculatus
ENSXCOG00000020384	-	100	100.000	ENSXMAG00000004558	-	100	100.000	Xiphophorus_maculatus