EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXCOG00000020414 (Gene tree)
Gene ID: -
Gene Symbol: prpf18
Alias: zgc:91830
Full Name: PRP18 pre-mRNA processing factor 18 homolog (yeast)
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Plus strand
Length: 7987 bases
Position: chrKQ557212.1:13150353-13158339
Accession: ZDB-GENE-040704-45
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000027338	PRP4	PF08799.11	9.9e-14	1	1
ENSXCOP00000027337	PRP4	PF08799.11	2.2e-13	1	1
ENSXCOP00000027337	Prp18	PF02840.15	1.6e-62	1	1
ENSXCOP00000027338	Prp18	PF02840.15	7.2e-49	1	2
ENSXCOP00000027338	Prp18	PF02840.15	7.2e-49	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000027670	-	1029	-	ENSXCOP00000027337	342 (aa)	-	-
ENSXCOT00000027671	-	999	-	ENSXCOP00000027338	332 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000020414's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000020414's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000020414	prpf18	100	82.849	ENSG00000165630	PRPF18	100	82.849	Homo_sapiens
ENSXCOG00000020414	prpf18	100	92.711	ENSAPOG00000024177	prpf18	100	92.711	Acanthochromis_polyacanthus
ENSXCOG00000020414	prpf18	100	82.267	ENSAMEG00000013591	-	100	82.267	Ailuropoda_melanoleuca
ENSXCOG00000020414	prpf18	100	92.128	ENSACIG00000001186	prpf18	100	92.128	Amphilophus_citrinellus
ENSXCOG00000020414	prpf18	98	93.155	ENSAOCG00000006572	prpf18	94	90.698	Amphiprion_ocellaris
ENSXCOG00000020414	prpf18	100	93.294	ENSAPEG00000004564	prpf18	100	93.294	Amphiprion_percula
ENSXCOG00000020414	prpf18	100	92.128	ENSATEG00000000303	prpf18	100	92.128	Anabas_testudineus
ENSXCOG00000020414	prpf18	99	80.409	ENSAPLG00000003387	-	99	80.409	Anas_platyrhynchos
ENSXCOG00000020414	prpf18	100	81.503	ENSACAG00000000818	-	100	81.503	Anolis_carolinensis
ENSXCOG00000020414	prpf18	100	82.558	ENSANAG00000037445	-	100	82.558	Aotus_nancymaae
ENSXCOG00000020414	prpf18	100	91.254	ENSACLG00000026296	prpf18	100	91.254	Astatotilapia_calliptera
ENSXCOG00000020414	prpf18	100	87.500	ENSAMXG00000012848	prpf18	100	87.500	Astyanax_mexicanus
ENSXCOG00000020414	prpf18	100	82.267	ENSBTAG00000017244	PRPF18	100	82.267	Bos_taurus
ENSXCOG00000020414	prpf18	98	39.255	WBGene00009320	F32B6.3	97	39.255	Caenorhabditis_elegans
ENSXCOG00000020414	prpf18	100	82.558	ENSCJAG00000009432	-	100	82.558	Callithrix_jacchus
ENSXCOG00000020414	prpf18	100	82.267	ENSCAFG00000004735	-	100	82.267	Canis_familiaris
ENSXCOG00000020414	prpf18	100	82.267	ENSCAFG00020007712	-	100	82.267	Canis_lupus_dingo
ENSXCOG00000020414	prpf18	100	82.267	ENSCHIG00000000499	-	100	82.267	Capra_hircus
ENSXCOG00000020414	prpf18	100	82.558	ENSTSYG00000003517	-	100	82.558	Carlito_syrichta
ENSXCOG00000020414	prpf18	100	82.849	ENSCPOG00000021069	-	100	82.849	Cavia_porcellus
ENSXCOG00000020414	prpf18	100	82.558	ENSCCAG00000036822	-	100	82.558	Cebus_capucinus
ENSXCOG00000020414	prpf18	100	72.093	ENSCATG00000016633	-	100	72.093	Cercocebus_atys
ENSXCOG00000020414	prpf18	100	82.558	ENSCLAG00000011770	-	100	82.558	Chinchilla_lanigera
ENSXCOG00000020414	prpf18	100	80.737	ENSCSAG00000013109	-	100	80.737	Chlorocebus_sabaeus
ENSXCOG00000020414	prpf18	100	79.050	ENSCPBG00000003100	-	100	79.888	Chrysemys_picta_bellii
ENSXCOG00000020414	prpf18	99	56.105	ENSCING00000020481	-	97	56.105	Ciona_intestinalis
ENSXCOG00000020414	prpf18	99	54.971	ENSCSAVG00000010546	-	99	54.545	Ciona_savignyi
ENSXCOG00000020414	prpf18	100	82.849	ENSCANG00000034900	-	100	82.849	Colobus_angolensis_palliatus
ENSXCOG00000020414	prpf18	100	82.558	ENSCGRG00001023665	Prpf18	100	82.558	Cricetulus_griseus_chok1gshd
ENSXCOG00000020414	prpf18	100	82.558	ENSCGRG00000014690	Prpf18	100	82.558	Cricetulus_griseus_crigri
ENSXCOG00000020414	prpf18	100	88.338	ENSCSEG00000005536	prpf18	99	88.338	Cynoglossus_semilaevis
ENSXCOG00000020414	prpf18	100	96.210	ENSCVAG00000012401	prpf18	100	96.210	Cyprinodon_variegatus
ENSXCOG00000020414	prpf18	100	87.791	ENSDARG00000058306	prpf18	100	87.791	Danio_rerio
ENSXCOG00000020414	prpf18	100	82.267	ENSDNOG00000035607	-	100	82.267	Dasypus_novemcinctus
ENSXCOG00000020414	prpf18	100	81.977	ENSDORG00000000858	Prpf18	100	81.977	Dipodomys_ordii
ENSXCOG00000020414	prpf18	99	52.059	FBgn0027784	Prp18	98	52.059	Drosophila_melanogaster
ENSXCOG00000020414	prpf18	100	75.000	ENSETEG00000015060	-	100	75.000	Echinops_telfairi
ENSXCOG00000020414	prpf18	100	68.481	ENSEBUG00000016502	prpf18	99	67.622	Eptatretus_burgeri
ENSXCOG00000020414	prpf18	100	82.558	ENSEASG00005019373	-	100	82.558	Equus_asinus_asinus
ENSXCOG00000020414	prpf18	100	82.558	ENSECAG00000006997	PRPF18	100	82.558	Equus_caballus
ENSXCOG00000020414	prpf18	78	100.000	ENSEEUG00000001171	-	79	100.000	Erinaceus_europaeus
ENSXCOG00000020414	prpf18	100	86.667	ENSELUG00000022190	prpf18	100	86.667	Esox_lucius
ENSXCOG00000020414	prpf18	100	82.267	ENSFCAG00000004436	-	100	82.267	Felis_catus
ENSXCOG00000020414	prpf18	92	77.676	ENSFALG00000001912	-	97	77.982	Ficedula_albicollis
ENSXCOG00000020414	prpf18	94	84.472	ENSFDAG00000014026	-	100	84.472	Fukomys_damarensis
ENSXCOG00000020414	prpf18	99	55.908	ENSFDAG00000010713	-	97	55.908	Fukomys_damarensis
ENSXCOG00000020414	prpf18	80	97.455	ENSFHEG00000020125	prpf18	100	97.455	Fundulus_heteroclitus
ENSXCOG00000020414	prpf18	99	86.804	ENSGMOG00000012210	prpf18	99	86.804	Gadus_morhua
ENSXCOG00000020414	prpf18	100	81.395	ENSGALG00000043593	-	100	81.395	Gallus_gallus
ENSXCOG00000020414	prpf18	100	97.085	ENSGAFG00000006034	prpf18	100	97.085	Gambusia_affinis
ENSXCOG00000020414	prpf18	100	88.338	ENSGACG00000012232	prpf18	100	88.338	Gasterosteus_aculeatus
ENSXCOG00000020414	prpf18	100	83.140	ENSGAGG00000016878	-	100	83.140	Gopherus_agassizii
ENSXCOG00000020414	prpf18	92	82.075	ENSGGOG00000025188	-	96	82.075	Gorilla_gorilla
ENSXCOG00000020414	prpf18	100	91.254	ENSHBUG00000010264	prpf18	100	91.254	Haplochromis_burtoni
ENSXCOG00000020414	prpf18	100	82.267	ENSHGLG00000018534	PRPF18	100	82.267	Heterocephalus_glaber_female
ENSXCOG00000020414	prpf18	94	84.161	ENSHGLG00100012161	-	98	84.161	Heterocephalus_glaber_male
ENSXCOG00000020414	prpf18	100	92.420	ENSHCOG00000015987	prpf18	100	92.420	Hippocampus_comes
ENSXCOG00000020414	prpf18	100	81.408	ENSIPUG00000007432	prpf18	100	81.408	Ictalurus_punctatus
ENSXCOG00000020414	prpf18	100	82.558	ENSSTOG00000008735	-	100	82.558	Ictidomys_tridecemlineatus
ENSXCOG00000020414	prpf18	100	82.849	ENSJJAG00000024041	-	100	82.849	Jaculus_jaculus
ENSXCOG00000020414	prpf18	100	61.159	ENSJJAG00000015191	-	100	61.159	Jaculus_jaculus
ENSXCOG00000020414	prpf18	100	93.003	ENSKMAG00000012124	prpf18	100	93.003	Kryptolebias_marmoratus
ENSXCOG00000020414	prpf18	100	85.714	ENSLBEG00000028466	prpf18	99	86.982	Labrus_bergylta
ENSXCOG00000020414	prpf18	100	82.558	ENSLACG00000009885	prpf18	100	82.558	Latimeria_chalumnae
ENSXCOG00000020414	prpf18	100	86.337	ENSLOCG00000016736	prpf18	100	86.337	Lepisosteus_oculatus
ENSXCOG00000020414	prpf18	100	82.849	ENSLAFG00000007753	-	100	82.849	Loxodonta_africana
ENSXCOG00000020414	prpf18	100	82.849	ENSMFAG00000000540	-	100	82.849	Macaca_fascicularis
ENSXCOG00000020414	prpf18	100	82.849	ENSMMUG00000015071	PRPF18	93	90.066	Macaca_mulatta
ENSXCOG00000020414	prpf18	100	82.849	ENSMNEG00000024679	-	100	82.849	Macaca_nemestrina
ENSXCOG00000020414	prpf18	100	67.733	ENSMLEG00000031715	-	100	67.733	Mandrillus_leucophaeus
ENSXCOG00000020414	prpf18	100	91.254	ENSMAMG00000006610	prpf18	100	91.254	Mastacembelus_armatus
ENSXCOG00000020414	prpf18	100	91.254	ENSMZEG00005019392	prpf18	100	91.254	Maylandia_zebra
ENSXCOG00000020414	prpf18	100	81.395	ENSMGAG00000005023	-	100	81.395	Meleagris_gallopavo
ENSXCOG00000020414	prpf18	100	83.140	ENSMICG00000006572	-	100	83.140	Microcebus_murinus
ENSXCOG00000020414	prpf18	100	82.849	ENSMOCG00000021468	Prpf18	100	82.849	Microtus_ochrogaster
ENSXCOG00000020414	prpf18	100	92.398	ENSMMOG00000013012	prpf18	100	92.398	Mola_mola
ENSXCOG00000020414	prpf18	100	75.581	ENSMODG00000024043	-	100	75.581	Monodelphis_domestica
ENSXCOG00000020414	prpf18	96	77.353	ENSMODG00000016902	-	92	77.353	Monodelphis_domestica
ENSXCOG00000020414	prpf18	100	83.143	ENSMALG00000005486	prpf18	100	83.429	Monopterus_albus
ENSXCOG00000020414	prpf18	100	82.267	MGP_CAROLIEiJ_G0023143	Prpf18	100	94.521	Mus_caroli
ENSXCOG00000020414	prpf18	100	82.558	ENSMUSG00000039449	Prpf18	100	94.521	Mus_musculus
ENSXCOG00000020414	prpf18	100	82.558	MGP_PahariEiJ_G0019203	Prpf18	100	94.521	Mus_pahari
ENSXCOG00000020414	prpf18	100	82.558	MGP_SPRETEiJ_G0024061	Prpf18	100	94.521	Mus_spretus
ENSXCOG00000020414	prpf18	100	82.558	ENSMPUG00000000938	-	100	82.558	Mustela_putorius_furo
ENSXCOG00000020414	prpf18	100	81.977	ENSMLUG00000009200	-	100	81.977	Myotis_lucifugus
ENSXCOG00000020414	prpf18	100	82.849	ENSNGAG00000012500	-	100	82.849	Nannospalax_galili
ENSXCOG00000020414	prpf18	68	81.034	ENSNGAG00000023550	-	83	81.034	Nannospalax_galili
ENSXCOG00000020414	prpf18	100	91.545	ENSNBRG00000001778	prpf18	100	91.545	Neolamprologus_brichardi
ENSXCOG00000020414	prpf18	100	82.849	ENSNLEG00000012186	-	100	82.849	Nomascus_leucogenys
ENSXCOG00000020414	prpf18	100	58.772	ENSMEUG00000005032	-	100	58.772	Notamacropus_eugenii
ENSXCOG00000020414	prpf18	77	63.296	ENSOPRG00000002153	-	100	63.296	Ochotona_princeps
ENSXCOG00000020414	prpf18	100	81.977	ENSODEG00000003770	-	100	81.977	Octodon_degus
ENSXCOG00000020414	prpf18	98	91.369	ENSONIG00000014854	prpf18	96	91.369	Oreochromis_niloticus
ENSXCOG00000020414	prpf18	100	83.430	ENSOANG00000015404	-	100	83.430	Ornithorhynchus_anatinus
ENSXCOG00000020414	prpf18	100	82.558	ENSOCUG00000027756	-	96	83.283	Oryctolagus_cuniculus
ENSXCOG00000020414	prpf18	100	87.784	ENSORLG00000010293	prpf18	100	87.784	Oryzias_latipes
ENSXCOG00000020414	prpf18	100	90.087	ENSORLG00020001530	prpf18	100	90.087	Oryzias_latipes_hni
ENSXCOG00000020414	prpf18	100	89.796	ENSORLG00015013705	prpf18	100	89.796	Oryzias_latipes_hsok
ENSXCOG00000020414	prpf18	100	91.254	ENSOMEG00000009167	prpf18	100	91.254	Oryzias_melastigma
ENSXCOG00000020414	prpf18	100	81.977	ENSOGAG00000007294	-	100	81.977	Otolemur_garnettii
ENSXCOG00000020414	prpf18	100	80.170	ENSOARG00000006243	-	100	80.170	Ovis_aries
ENSXCOG00000020414	prpf18	100	82.849	ENSPPAG00000041959	-	100	82.849	Pan_paniscus
ENSXCOG00000020414	prpf18	100	82.267	ENSPPRG00000000107	-	100	82.267	Panthera_pardus
ENSXCOG00000020414	prpf18	100	82.267	ENSPTIG00000021094	-	100	82.267	Panthera_tigris_altaica
ENSXCOG00000020414	prpf18	100	82.849	ENSPTRG00000002306	PRPF18	100	82.849	Pan_troglodytes
ENSXCOG00000020414	prpf18	100	82.558	ENSPANG00000023346	-	100	82.558	Papio_anubis
ENSXCOG00000020414	prpf18	90	100.000	ENSPKIG00000014128	prpf18	96	84.986	Paramormyrops_kingsleyae
ENSXCOG00000020414	prpf18	100	82.267	ENSPSIG00000016064	-	100	82.267	Pelodiscus_sinensis
ENSXCOG00000020414	prpf18	100	82.849	ENSPMGG00000016486	prpf18	100	82.849	Periophthalmus_magnuspinnatus
ENSXCOG00000020414	prpf18	100	82.558	ENSPEMG00000013704	Prpf18	100	82.558	Peromyscus_maniculatus_bairdii
ENSXCOG00000020414	prpf18	100	72.779	ENSPMAG00000000204	prpf18	100	72.779	Petromyzon_marinus
ENSXCOG00000020414	prpf18	92	82.075	ENSPCIG00000012963	-	99	82.075	Phascolarctos_cinereus
ENSXCOG00000020414	prpf18	100	94.886	ENSPFOG00000017611	prpf18	100	94.886	Poecilia_formosa
ENSXCOG00000020414	prpf18	100	97.376	ENSPLAG00000000369	prpf18	100	97.376	Poecilia_latipinna
ENSXCOG00000020414	prpf18	100	97.668	ENSPMEG00000005183	prpf18	100	97.668	Poecilia_mexicana
ENSXCOG00000020414	prpf18	100	96.501	ENSPREG00000015232	prpf18	100	96.501	Poecilia_reticulata
ENSXCOG00000020414	prpf18	100	82.558	ENSPPYG00000002101	PRPF18	100	82.558	Pongo_abelii
ENSXCOG00000020414	prpf18	87	87.805	ENSPCAG00000010833	-	82	87.805	Procavia_capensis
ENSXCOG00000020414	prpf18	100	79.532	ENSPCOG00000013057	-	100	79.532	Propithecus_coquereli
ENSXCOG00000020414	prpf18	100	49.709	ENSPVAG00000002947	-	100	49.709	Pteropus_vampyrus
ENSXCOG00000020414	prpf18	100	90.962	ENSPNYG00000003554	prpf18	100	90.962	Pundamilia_nyererei
ENSXCOG00000020414	prpf18	100	84.703	ENSPNAG00000023151	prpf18	100	84.703	Pygocentrus_nattereri
ENSXCOG00000020414	prpf18	100	82.558	ENSRNOG00000018396	Prpf18	100	82.558	Rattus_norvegicus
ENSXCOG00000020414	prpf18	100	83.140	ENSRBIG00000028028	-	100	83.140	Rhinopithecus_bieti
ENSXCOG00000020414	prpf18	100	82.849	ENSRROG00000040695	-	100	82.849	Rhinopithecus_roxellana
ENSXCOG00000020414	prpf18	100	82.558	ENSSBOG00000034482	-	100	82.558	Saimiri_boliviensis_boliviensis
ENSXCOG00000020414	prpf18	100	83.140	ENSSHAG00000016463	-	100	83.140	Sarcophilus_harrisii
ENSXCOG00000020414	prpf18	100	68.895	ENSSHAG00000009669	-	100	68.895	Sarcophilus_harrisii
ENSXCOG00000020414	prpf18	77	43.774	ENSSFOG00015021154	-	89	48.511	Scleropages_formosus
ENSXCOG00000020414	prpf18	98	82.709	ENSSFOG00015022118	prpf18	100	78.510	Scleropages_formosus
ENSXCOG00000020414	prpf18	100	89.796	ENSSMAG00000005308	prpf18	100	89.796	Scophthalmus_maximus
ENSXCOG00000020414	prpf18	100	92.711	ENSSDUG00000015428	prpf18	100	92.711	Seriola_dumerili
ENSXCOG00000020414	prpf18	100	92.420	ENSSLDG00000023989	prpf18	100	92.420	Seriola_lalandi_dorsalis
ENSXCOG00000020414	prpf18	83	92.308	ENSSARG00000005307	-	78	92.308	Sorex_araneus
ENSXCOG00000020414	prpf18	100	82.267	ENSSPUG00000002619	-	100	82.267	Sphenodon_punctatus
ENSXCOG00000020414	prpf18	100	93.003	ENSSPAG00000019502	prpf18	100	93.003	Stegastes_partitus
ENSXCOG00000020414	prpf18	100	82.267	ENSSSCG00000026354	-	100	82.267	Sus_scrofa
ENSXCOG00000020414	prpf18	100	81.105	ENSTGUG00000002286	-	100	81.105	Taeniopygia_guttata
ENSXCOG00000020414	prpf18	100	89.504	ENSTRUG00000011278	prpf18	100	89.504	Takifugu_rubripes
ENSXCOG00000020414	prpf18	100	89.213	ENSTNIG00000000911	prpf18	100	89.213	Tetraodon_nigroviridis
ENSXCOG00000020414	prpf18	84	97.436	ENSTBEG00000013011	-	79	97.436	Tupaia_belangeri
ENSXCOG00000020414	prpf18	100	82.849	ENSTTRG00000011117	PRPF18	100	82.849	Tursiops_truncatus
ENSXCOG00000020414	prpf18	91	84.984	ENSUAMG00000001815	-	93	84.984	Ursus_americanus
ENSXCOG00000020414	prpf18	100	78.042	ENSUMAG00000012329	-	100	78.042	Ursus_maritimus
ENSXCOG00000020414	prpf18	100	76.744	ENSVPAG00000011486	-	100	76.744	Vicugna_pacos
ENSXCOG00000020414	prpf18	100	82.267	ENSVVUG00000005453	-	100	82.267	Vulpes_vulpes
ENSXCOG00000020414	prpf18	100	74.928	ENSXETG00000024057	prpf18	100	74.640	Xenopus_tropicalis
ENSXCOG00000020414	prpf18	100	99.125	ENSXMAG00000004713	prpf18	91	99.125	Xiphophorus_maculatus