EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000020481 (Gene tree)
Gene ID: -
Gene Symbol: pcbp3
Alias: -
Full Name: poly(rC) binding protein 3
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Minus strand
Length: 9043 bases
Position: chrKQ557217.1:9931281-9940323
Accession: ZDB-GENE-050522-157
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000027424	KH_1	PF00013.29	5.3e-50	1	3
ENSXCOP00000027424	KH_1	PF00013.29	5.3e-50	2	3
ENSXCOP00000027424	KH_1	PF00013.29	5.3e-50	3	3
ENSXCOP00000027424	KH_2	PF07650.17	1.2e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000027757	-	1062	-	ENSXCOP00000027424	353 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000020481's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000020481's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000020481	pcbp3	93	68.293	ENSXCOG00000013797	PCBP2	94	68.293
ENSXCOG00000020481	pcbp3	63	76.970	ENSXCOG00000005968	zgc:110045	82	76.970
ENSXCOG00000020481	pcbp3	59	72.785	ENSXCOG00000017325	pcbp4	67	72.785
ENSXCOG00000020481	pcbp3	88	38.462	ENSXCOG00000002806	FUBP3	71	39.062
ENSXCOG00000020481	pcbp3	69	34.615	ENSXCOG00000014443	khsrp	53	34.615
ENSXCOG00000020481	pcbp3	87	30.000	ENSXCOG00000011765	-	69	30.000
ENSXCOG00000020481	pcbp3	83	67.857	ENSXCOG00000012907	pcbp2	96	67.857
ENSXCOG00000020481	pcbp3	88	58.537	ENSXCOG00000000111	-	90	59.722
ENSXCOG00000020481	pcbp3	59	38.462	ENSXCOG00000009738	NOVA1	81	33.742
ENSXCOG00000020481	pcbp3	69	55.556	ENSXCOG00000005140	hnrnpk	53	55.556
ENSXCOG00000020481	pcbp3	60	37.313	ENSXCOG00000019354	fubp1	59	37.313
ENSXCOG00000020481	pcbp3	67	55.556	ENSXCOG00000001806	hnrpkl	54	55.556

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000020481	pcbp3	100	90.113	ENSAPOG00000016582	-	100	90.113	Acanthochromis_polyacanthus
ENSXCOG00000020481	pcbp3	97	88.563	ENSAPOG00000020003	pcbp3	87	88.563	Acanthochromis_polyacanthus
ENSXCOG00000020481	pcbp3	93	86.726	ENSAMEG00000001697	-	95	86.726	Ailuropoda_melanoleuca
ENSXCOG00000020481	pcbp3	100	96.045	ENSACIG00000010933	pcbp3	100	96.045	Amphilophus_citrinellus
ENSXCOG00000020481	pcbp3	95	88.690	ENSACIG00000002739	-	96	88.690	Amphilophus_citrinellus
ENSXCOG00000020481	pcbp3	83	85.855	ENSAOCG00000007806	-	96	85.855	Amphiprion_ocellaris
ENSXCOG00000020481	pcbp3	95	91.964	ENSAOCG00000008592	-	97	91.964	Amphiprion_ocellaris
ENSXCOG00000020481	pcbp3	95	87.500	ENSAPEG00000005209	-	96	87.500	Amphiprion_percula
ENSXCOG00000020481	pcbp3	100	98.592	ENSAPEG00000008011	pcbp3	100	98.592	Amphiprion_percula
ENSXCOG00000020481	pcbp3	95	96.429	ENSATEG00000015787	-	99	96.429	Anabas_testudineus
ENSXCOG00000020481	pcbp3	95	87.500	ENSATEG00000009833	-	96	87.500	Anabas_testudineus
ENSXCOG00000020481	pcbp3	93	85.380	ENSAPLG00000002975	-	95	85.380	Anas_platyrhynchos
ENSXCOG00000020481	pcbp3	98	77.297	ENSAPLG00000008951	-	82	77.297	Anas_platyrhynchos
ENSXCOG00000020481	pcbp3	93	90.517	ENSACAG00000004607	-	95	90.517	Anolis_carolinensis
ENSXCOG00000020481	pcbp3	93	86.018	ENSACAG00000009819	-	94	86.018	Anolis_carolinensis
ENSXCOG00000020481	pcbp3	91	71.004	ENSANAG00000030702	-	96	87.732	Aotus_nancymaae
ENSXCOG00000020481	pcbp3	100	97.746	ENSACLG00000011835	pcbp3	100	97.746	Astatotilapia_calliptera
ENSXCOG00000020481	pcbp3	100	89.548	ENSACLG00000003801	-	100	89.548	Astatotilapia_calliptera
ENSXCOG00000020481	pcbp3	100	96.045	ENSAMXG00000003440	pcbp3	100	96.045	Astyanax_mexicanus
ENSXCOG00000020481	pcbp3	95	84.821	ENSAMXG00000013588	-	99	84.821	Astyanax_mexicanus
ENSXCOG00000020481	pcbp3	98	62.398	ENSAMXG00000001760	zgc:110045	76	62.398	Astyanax_mexicanus
ENSXCOG00000020481	pcbp3	91	83.582	ENSCAFG00020019472	-	86	83.582	Canis_lupus_dingo
ENSXCOG00000020481	pcbp3	93	88.450	ENSCSAG00000007440	-	86	88.450	Chlorocebus_sabaeus
ENSXCOG00000020481	pcbp3	98	85.981	ENSCPBG00000000733	-	72	85.981	Chrysemys_picta_bellii
ENSXCOG00000020481	pcbp3	96	86.686	ENSCPBG00000012151	-	93	86.686	Chrysemys_picta_bellii
ENSXCOG00000020481	pcbp3	95	72.022	ENSCSEG00000016984	-	94	75.862	Cynoglossus_semilaevis
ENSXCOG00000020481	pcbp3	96	87.059	ENSCSEG00000000822	pcbp3	100	87.059	Cynoglossus_semilaevis
ENSXCOG00000020481	pcbp3	100	89.548	ENSCVAG00000005262	-	100	89.548	Cyprinodon_variegatus
ENSXCOG00000020481	pcbp3	100	98.310	ENSCVAG00000014482	pcbp3	100	98.310	Cyprinodon_variegatus
ENSXCOG00000020481	pcbp3	100	96.328	ENSDARG00000054378	pcbp3	100	96.328	Danio_rerio
ENSXCOG00000020481	pcbp3	93	74.772	ENSETEG00000015988	-	95	74.772	Echinops_telfairi
ENSXCOG00000020481	pcbp3	82	68.966	ENSEBUG00000016192	pcbp3	99	68.966	Eptatretus_burgeri
ENSXCOG00000020481	pcbp3	71	66.667	ENSEBUG00000005495	pcbp3	68	66.667	Eptatretus_burgeri
ENSXCOG00000020481	pcbp3	98	71.347	ENSEBUG00000007485	-	92	73.061	Eptatretus_burgeri
ENSXCOG00000020481	pcbp3	100	89.831	ENSELUG00000001560	-	97	84.181	Esox_lucius
ENSXCOG00000020481	pcbp3	100	97.191	ENSELUG00000003521	pcbp3	100	97.191	Esox_lucius
ENSXCOG00000020481	pcbp3	93	88.146	ENSFALG00000003949	-	95	88.146	Ficedula_albicollis
ENSXCOG00000020481	pcbp3	98	77.568	ENSFALG00000004411	-	77	77.568	Ficedula_albicollis
ENSXCOG00000020481	pcbp3	95	89.286	ENSFHEG00000016615	pcbp3	95	89.286	Fundulus_heteroclitus
ENSXCOG00000020481	pcbp3	95	87.202	ENSFHEG00000006539	-	96	87.202	Fundulus_heteroclitus
ENSXCOG00000020481	pcbp3	95	75.766	ENSGMOG00000011992	pcbp3	96	75.833	Gadus_morhua
ENSXCOG00000020481	pcbp3	95	66.667	ENSGMOG00000008611	-	99	66.667	Gadus_morhua
ENSXCOG00000020481	pcbp3	93	87.644	ENSGALG00000004394	-	95	87.644	Gallus_gallus
ENSXCOG00000020481	pcbp3	93	86.018	ENSGALG00000013155	-	99	82.388	Gallus_gallus
ENSXCOG00000020481	pcbp3	98	92.486	ENSGAFG00000011430	pcbp3	98	92.486	Gambusia_affinis
ENSXCOG00000020481	pcbp3	100	89.548	ENSGAFG00000010274	-	100	89.548	Gambusia_affinis
ENSXCOG00000020481	pcbp3	95	84.181	ENSGACG00000002266	-	96	84.181	Gasterosteus_aculeatus
ENSXCOG00000020481	pcbp3	96	82.633	ENSGACG00000014955	-	97	82.633	Gasterosteus_aculeatus
ENSXCOG00000020481	pcbp3	76	87.037	ENSGAGG00000006956	-	86	87.037	Gopherus_agassizii
ENSXCOG00000020481	pcbp3	82	81.100	ENSGAGG00000000271	-	100	81.100	Gopherus_agassizii
ENSXCOG00000020481	pcbp3	100	89.548	ENSHBUG00000021782	-	100	89.548	Haplochromis_burtoni
ENSXCOG00000020481	pcbp3	100	97.746	ENSHBUG00000010697	pcbp3	100	97.746	Haplochromis_burtoni
ENSXCOG00000020481	pcbp3	95	85.119	ENSHCOG00000006067	-	96	85.119	Hippocampus_comes
ENSXCOG00000020481	pcbp3	100	98.588	ENSHCOG00000017868	pcbp3	100	98.588	Hippocampus_comes
ENSXCOG00000020481	pcbp3	95	95.536	ENSIPUG00000006238	pcbp3	97	95.536	Ictalurus_punctatus
ENSXCOG00000020481	pcbp3	100	98.310	ENSKMAG00000003046	pcbp3	100	98.310	Kryptolebias_marmoratus
ENSXCOG00000020481	pcbp3	100	88.701	ENSKMAG00000018530	-	100	88.701	Kryptolebias_marmoratus
ENSXCOG00000020481	pcbp3	95	89.552	ENSLBEG00000006201	pcbp3	95	89.552	Labrus_bergylta
ENSXCOG00000020481	pcbp3	100	76.554	ENSLBEG00000006542	-	100	78.814	Labrus_bergylta
ENSXCOG00000020481	pcbp3	98	77.384	ENSLACG00000010804	zgc:110045	77	77.384	Latimeria_chalumnae
ENSXCOG00000020481	pcbp3	93	88.352	ENSLACG00000010386	pcbp3	73	88.352	Latimeria_chalumnae
ENSXCOG00000020481	pcbp3	93	95.441	ENSLOCG00000009369	pcbp3	95	95.441	Lepisosteus_oculatus
ENSXCOG00000020481	pcbp3	93	85.410	ENSLOCG00000005058	zgc:110045	79	85.410	Lepisosteus_oculatus
ENSXCOG00000020481	pcbp3	95	86.310	ENSMAMG00000011620	-	96	86.310	Mastacembelus_armatus
ENSXCOG00000020481	pcbp3	95	89.286	ENSMAMG00000022336	pcbp3	93	89.286	Mastacembelus_armatus
ENSXCOG00000020481	pcbp3	100	96.045	ENSMZEG00005008993	pcbp3	100	96.045	Maylandia_zebra
ENSXCOG00000020481	pcbp3	100	86.158	ENSMZEG00005014882	-	100	86.275	Maylandia_zebra
ENSXCOG00000020481	pcbp3	94	79.772	ENSMGAG00000001883	-	96	79.772	Meleagris_gallopavo
ENSXCOG00000020481	pcbp3	98	77.568	ENSMGAG00000006794	-	77	77.568	Meleagris_gallopavo
ENSXCOG00000020481	pcbp3	95	88.393	ENSMMOG00000000730	pcbp3	87	88.393	Mola_mola
ENSXCOG00000020481	pcbp3	95	86.905	ENSMMOG00000005216	-	96	86.905	Mola_mola
ENSXCOG00000020481	pcbp3	71	86.449	ENSMODG00000027884	-	93	86.449	Monodelphis_domestica
ENSXCOG00000020481	pcbp3	100	96.884	ENSMALG00000000691	pcbp3	100	96.884	Monopterus_albus
ENSXCOG00000020481	pcbp3	93	78.063	ENSMPUG00000001779	-	87	78.063	Mustela_putorius_furo
ENSXCOG00000020481	pcbp3	100	89.136	ENSNBRG00000016714	-	100	89.136	Neolamprologus_brichardi
ENSXCOG00000020481	pcbp3	100	95.480	ENSNBRG00000016409	-	100	95.480	Neolamprologus_brichardi
ENSXCOG00000020481	pcbp3	93	86.782	ENSOPRG00000003431	-	99	86.782	Ochotona_princeps
ENSXCOG00000020481	pcbp3	96	92.201	ENSONIG00000012122	-	98	92.201	Oreochromis_niloticus
ENSXCOG00000020481	pcbp3	95	89.286	ENSONIG00000004611	-	96	89.286	Oreochromis_niloticus
ENSXCOG00000020481	pcbp3	93	87.842	ENSOCUG00000002696	-	86	87.842	Oryctolagus_cuniculus
ENSXCOG00000020481	pcbp3	99	88.952	ENSORLG00000022739	-	99	88.952	Oryzias_latipes
ENSXCOG00000020481	pcbp3	95	91.964	ENSORLG00000000059	pcbp3	99	91.964	Oryzias_latipes
ENSXCOG00000020481	pcbp3	99	88.669	ENSORLG00020006124	-	99	88.669	Oryzias_latipes_hni
ENSXCOG00000020481	pcbp3	95	91.964	ENSORLG00020012671	pcbp3	97	91.964	Oryzias_latipes_hni
ENSXCOG00000020481	pcbp3	99	88.952	ENSORLG00015008051	-	99	88.952	Oryzias_latipes_hsok
ENSXCOG00000020481	pcbp3	95	91.964	ENSORLG00015000429	pcbp3	97	91.964	Oryzias_latipes_hsok
ENSXCOG00000020481	pcbp3	85	92.027	ENSOMEG00000020811	pcbp3	96	92.027	Oryzias_melastigma
ENSXCOG00000020481	pcbp3	95	88.988	ENSOMEG00000020162	-	96	88.988	Oryzias_melastigma
ENSXCOG00000020481	pcbp3	93	81.972	ENSOGAG00000008044	-	95	81.972	Otolemur_garnettii
ENSXCOG00000020481	pcbp3	76	78.404	ENSPKIG00000020913	-	91	78.404	Paramormyrops_kingsleyae
ENSXCOG00000020481	pcbp3	100	88.983	ENSPKIG00000019329	pcbp3	100	88.983	Paramormyrops_kingsleyae
ENSXCOG00000020481	pcbp3	93	76.522	ENSPSIG00000014970	-	95	77.101	Pelodiscus_sinensis
ENSXCOG00000020481	pcbp3	74	81.226	ENSPSIG00000008350	-	72	81.226	Pelodiscus_sinensis
ENSXCOG00000020481	pcbp3	100	98.300	ENSPMGG00000022383	pcbp3	100	98.300	Periophthalmus_magnuspinnatus
ENSXCOG00000020481	pcbp3	93	68.862	ENSPMAG00000004551	pcbp3	88	68.862	Petromyzon_marinus
ENSXCOG00000020481	pcbp3	76	87.958	ENSPMAG00000004637	-	97	87.958	Petromyzon_marinus
ENSXCOG00000020481	pcbp3	93	95.137	ENSPCIG00000028092	-	95	95.137	Phascolarctos_cinereus
ENSXCOG00000020481	pcbp3	100	83.042	ENSPLAG00000011449	pcbp3	100	83.042	Poecilia_latipinna
ENSXCOG00000020481	pcbp3	94	84.012	ENSPLAG00000004074	-	89	84.012	Poecilia_latipinna
ENSXCOG00000020481	pcbp3	100	87.288	ENSPMEG00000006653	-	100	87.288	Poecilia_mexicana
ENSXCOG00000020481	pcbp3	100	100.000	ENSPMEG00000021239	pcbp3	100	100.000	Poecilia_mexicana
ENSXCOG00000020481	pcbp3	95	86.905	ENSPREG00000020585	-	96	86.905	Poecilia_reticulata
ENSXCOG00000020481	pcbp3	95	87.500	ENSPREG00000015736	pcbp3	99	87.500	Poecilia_reticulata
ENSXCOG00000020481	pcbp3	96	88.824	ENSPNYG00000012326	pcbp3	96	88.824	Pundamilia_nyererei
ENSXCOG00000020481	pcbp3	95	86.905	ENSPNYG00000013205	-	96	86.905	Pundamilia_nyererei
ENSXCOG00000020481	pcbp3	100	93.239	ENSPNAG00000008541	-	100	93.239	Pygocentrus_nattereri
ENSXCOG00000020481	pcbp3	95	89.881	ENSPNAG00000015104	pcbp3	96	89.881	Pygocentrus_nattereri
ENSXCOG00000020481	pcbp3	93	88.450	ENSRNOG00000001245	Pcbp3	95	88.450	Rattus_norvegicus
ENSXCOG00000020481	pcbp3	93	80.392	ENSRBIG00000028177	-	95	80.392	Rhinopithecus_bieti
ENSXCOG00000020481	pcbp3	93	84.615	ENSSHAG00000007890	-	95	83.333	Sarcophilus_harrisii
ENSXCOG00000020481	pcbp3	100	89.548	ENSSFOG00015010205	pcbp3	99	94.048	Scleropages_formosus
ENSXCOG00000020481	pcbp3	93	77.439	ENSSFOG00015007118	-	92	77.439	Scleropages_formosus
ENSXCOG00000020481	pcbp3	100	93.785	ENSSFOG00015014706	pcbp3	100	93.785	Scleropages_formosus
ENSXCOG00000020481	pcbp3	100	89.266	ENSSMAG00000003135	-	100	89.266	Scophthalmus_maximus
ENSXCOG00000020481	pcbp3	97	87.791	ENSSMAG00000011929	pcbp3	99	87.791	Scophthalmus_maximus
ENSXCOG00000020481	pcbp3	97	95.614	ENSSDUG00000011608	pcbp3	99	95.614	Seriola_dumerili
ENSXCOG00000020481	pcbp3	100	87.853	ENSSDUG00000008502	-	100	87.853	Seriola_dumerili
ENSXCOG00000020481	pcbp3	100	90.113	ENSSLDG00000020161	-	100	90.113	Seriola_lalandi_dorsalis
ENSXCOG00000020481	pcbp3	97	95.614	ENSSLDG00000008518	pcbp3	99	95.614	Seriola_lalandi_dorsalis
ENSXCOG00000020481	pcbp3	98	75.956	ENSSPUG00000013214	-	91	85.121	Sphenodon_punctatus
ENSXCOG00000020481	pcbp3	100	85.311	ENSSPAG00000023341	-	100	85.311	Stegastes_partitus
ENSXCOG00000020481	pcbp3	83	85.855	ENSSPAG00000004190	-	96	85.855	Stegastes_partitus
ENSXCOG00000020481	pcbp3	93	82.371	ENSTGUG00000008158	-	95	82.371	Taeniopygia_guttata
ENSXCOG00000020481	pcbp3	93	81.089	ENSTGUG00000003316	-	95	81.089	Taeniopygia_guttata
ENSXCOG00000020481	pcbp3	85	89.667	ENSTRUG00000006280	-	88	89.667	Takifugu_rubripes
ENSXCOG00000020481	pcbp3	100	92.090	ENSTRUG00000013604	pcbp3	100	92.090	Takifugu_rubripes
ENSXCOG00000020481	pcbp3	93	87.931	ENSTTRG00000015075	-	95	87.931	Tursiops_truncatus
ENSXCOG00000020481	pcbp3	94	76.338	ENSXETG00000010491	pcbp2	77	76.338	Xenopus_tropicalis
ENSXCOG00000020481	pcbp3	93	82.759	ENSXETG00000011483	pcbp1	95	82.759	Xenopus_tropicalis
ENSXCOG00000020481	pcbp3	100	98.592	ENSXMAG00000008175	pcbp3	100	98.592	Xiphophorus_maculatus
ENSXCOG00000020481	pcbp3	100	89.831	ENSXMAG00000028711	-	100	89.831	Xiphophorus_maculatus