EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXETG00000000465 (Gene tree)
Gene ID: -
Gene Symbol: smarcal1
Alias: -
Full Name: Xenopus tropicalis SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a-like 1 (smarcal1)%2C mRNA.
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Minus strand
Length: 13986 bases
Position: chrGL173529.1:4081-18066
Accession: NM_001079455
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000000989	ResIII	PF04851.15	1.1e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000000989	-	3074	-	ENSXETP00000000989	942 (aa)	-	Q0P4U8

Gene Model

Click here to download ENSXETG00000000465's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000000465's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000000465	smarcal1	97	55.979	ENSG00000138375	SMARCAL1	99	66.250	Homo_sapiens
ENSXETG00000000465	smarcal1	77	65.437	ENSAPOG00000020156	SMARCAL1	99	56.126	Acanthochromis_polyacanthus
ENSXETG00000000465	smarcal1	70	70.287	ENSACIG00000001500	smarcal1	85	70.287	Amphilophus_citrinellus
ENSXETG00000000465	smarcal1	97	57.465	ENSAOCG00000014266	SMARCAL1	98	57.573	Amphiprion_ocellaris
ENSXETG00000000465	smarcal1	99	56.166	ENSAPEG00000015861	SMARCAL1	99	62.745	Amphiprion_percula
ENSXETG00000000465	smarcal1	99	56.348	ENSATEG00000020624	SMARCAL1	99	56.243	Anabas_testudineus
ENSXETG00000000465	smarcal1	99	59.063	ENSAPLG00000009864	SMARCAL1	99	59.553	Anas_platyrhynchos
ENSXETG00000000465	smarcal1	99	58.475	ENSACAG00000004612	SMARCAL1	99	58.475	Anolis_carolinensis
ENSXETG00000000465	smarcal1	74	69.198	ENSACLG00000015990	SMARCAL1	97	57.746	Astatotilapia_calliptera
ENSXETG00000000465	smarcal1	99	58.000	ENSAMXG00000003350	smarcal1	99	58.000	Astyanax_mexicanus
ENSXETG00000000465	smarcal1	99	70.884	ENSCPBG00000013599	SMARCAL1	99	70.884	Chrysemys_picta_bellii
ENSXETG00000000465	smarcal1	71	47.840	ENSCING00000009308	-	100	47.840	Ciona_intestinalis
ENSXETG00000000465	smarcal1	97	56.427	ENSCSEG00000010785	SMARCAL1	99	56.739	Cynoglossus_semilaevis
ENSXETG00000000465	smarcal1	97	55.483	ENSCVAG00000018780	SMARCAL1	96	55.531	Cyprinodon_variegatus
ENSXETG00000000465	smarcal1	79	47.113	ENSEBUG00000011906	SMARCAL1	99	46.588	Eptatretus_burgeri
ENSXETG00000000465	smarcal1	73	66.908	ENSELUG00000010440	-	83	75.000	Esox_lucius
ENSXETG00000000465	smarcal1	99	58.444	ENSFALG00000003981	SMARCAL1	99	58.444	Ficedula_albicollis
ENSXETG00000000465	smarcal1	74	65.330	ENSFHEG00000008380	SMARCAL1	78	66.000	Fundulus_heteroclitus
ENSXETG00000000465	smarcal1	53	65.640	ENSGMOG00000010034	smarcal1	92	65.640	Gadus_morhua
ENSXETG00000000465	smarcal1	99	58.189	ENSGALG00000011475	RPL37A	99	58.189	Gallus_gallus
ENSXETG00000000465	smarcal1	81	67.850	ENSGACG00000006073	SMARCAL1	100	69.088	Gasterosteus_aculeatus
ENSXETG00000000465	smarcal1	93	60.991	ENSGAGG00000015660	SMARCAL1	99	60.991	Gopherus_agassizii
ENSXETG00000000465	smarcal1	97	58.351	ENSHBUG00000002973	smarcal1	97	58.351	Haplochromis_burtoni
ENSXETG00000000465	smarcal1	95	55.161	ENSHCOG00000017921	smarcal1	98	55.161	Hippocampus_comes
ENSXETG00000000465	smarcal1	73	65.224	ENSKMAG00000012023	SMARCAL1	99	55.714	Kryptolebias_marmoratus
ENSXETG00000000465	smarcal1	73	62.325	ENSLBEG00000022915	smarcal1	93	62.325	Labrus_bergylta
ENSXETG00000000465	smarcal1	68	68.118	ENSLBEG00000003493	smarcal1	100	56.439	Labrus_bergylta
ENSXETG00000000465	smarcal1	99	56.881	ENSLACG00000010974	SMARCAL1	99	57.012	Latimeria_chalumnae
ENSXETG00000000465	smarcal1	93	61.495	ENSLOCG00000009637	smarcal1	99	61.495	Lepisosteus_oculatus
ENSXETG00000000465	smarcal1	97	57.018	ENSMAMG00000000828	SMARCAL1	99	57.018	Mastacembelus_armatus
ENSXETG00000000465	smarcal1	74	69.054	ENSMZEG00005007660	SMARCAL1	97	57.638	Maylandia_zebra
ENSXETG00000000465	smarcal1	99	60.565	ENSMGAG00000011658	SMARCAL1	99	60.669	Meleagris_gallopavo
ENSXETG00000000465	smarcal1	70	64.910	ENSMMOG00000003842	smarcal1	82	64.910	Mola_mola
ENSXETG00000000465	smarcal1	98	56.992	ENSMODG00000015544	SMARCAL1	97	56.992	Monodelphis_domestica
ENSXETG00000000465	smarcal1	70	69.683	ENSNBRG00000016273	smarcal1	86	69.683	Neolamprologus_brichardi
ENSXETG00000000465	smarcal1	93	57.384	ENSMEUG00000004395	SMARCAL1	100	57.384	Notamacropus_eugenii
ENSXETG00000000465	smarcal1	97	58.306	ENSONIG00000009036	smarcal1	99	68.860	Oreochromis_niloticus
ENSXETG00000000465	smarcal1	97	56.742	ENSORLG00000016455	SMARCAL1	96	56.742	Oryzias_latipes
ENSXETG00000000465	smarcal1	97	56.850	ENSORLG00020001610	SMARCAL1	96	56.850	Oryzias_latipes_hni
ENSXETG00000000465	smarcal1	97	57.066	ENSORLG00015001865	SMARCAL1	96	57.066	Oryzias_latipes_hsok
ENSXETG00000000465	smarcal1	97	55.543	ENSOMEG00000001845	smarcal1	96	55.543	Oryzias_melastigma
ENSXETG00000000465	smarcal1	99	55.751	ENSPMGG00000019092	SMARCAL1	99	55.751	Periophthalmus_magnuspinnatus
ENSXETG00000000465	smarcal1	99	54.582	ENSPCIG00000022514	SMARCAL1	99	55.736	Phascolarctos_cinereus
ENSXETG00000000465	smarcal1	75	64.216	ENSPFOG00000000560	SMARCAL1	88	61.139	Poecilia_formosa
ENSXETG00000000465	smarcal1	75	64.216	ENSPMEG00000018146	SMARCAL1	88	60.886	Poecilia_mexicana
ENSXETG00000000465	smarcal1	99	58.755	ENSPNAG00000014900	smarcal1	94	58.755	Pygocentrus_nattereri
ENSXETG00000000465	smarcal1	99	53.403	ENSSHAG00000013538	SMARCAL1	99	53.403	Sarcophilus_harrisii
ENSXETG00000000465	smarcal1	99	53.823	ENSSMAG00000010427	SMARCAL1	99	53.823	Scophthalmus_maximus
ENSXETG00000000465	smarcal1	97	58.539	ENSSDUG00000017470	SMARCAL1	95	58.539	Seriola_dumerili
ENSXETG00000000465	smarcal1	99	57.636	ENSSLDG00000007224	SMARCAL1	99	57.636	Seriola_lalandi_dorsalis
ENSXETG00000000465	smarcal1	99	58.659	ENSSPUG00000015369	SMARCAL1	99	58.659	Sphenodon_punctatus
ENSXETG00000000465	smarcal1	93	69.149	ENSSPAG00000003742	smarcal1	99	65.906	Stegastes_partitus
ENSXETG00000000465	smarcal1	93	52.514	ENSSSCG00000035501	SMARCAL1	97	53.013	Sus_scrofa
ENSXETG00000000465	smarcal1	74	69.457	ENSTGUG00000005079	SMARCAL1	99	69.457	Taeniopygia_guttata
ENSXETG00000000465	smarcal1	97	51.241	ENSTRUG00000010701	SMARCAL1	98	51.348	Takifugu_rubripes
ENSXETG00000000465	smarcal1	97	48.666	ENSTTRG00000009001	SMARCAL1	96	48.666	Tursiops_truncatus