EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSXETG00000000619 (Gene tree)
Gene ID
-
Gene Symbol
xrn1
Alias
-
Full Name
5'-3' exoribonuclease 1
Gene Type
protein_coding
Species
Xenopus_tropicalis
Status
putative
Strand
Minus strand
Length
34520 bases
Position
chrGL172898.1:1312665-1347184
Accession
XB-GENE-1012713
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSXETP00000059293XRN_NPF03159.181.3e-9011
ENSXETP00000001359XRN_NPF03159.187.9e-8811
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSXETT00000065888-5270-ENSXETP000000592931705 (aa)-F6RK53
ENSXETT00000001359-1307-ENSXETP00000001359385 (aa)-F7DU20
Gene Model
Click here to download ENSXETG00000000619's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000000619's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSXETG00000000619xrn18742.051ENSXETG00000023501xrn25745.679
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSXETG00000000619xrn19988.542ENSG00000114127XRN19697.087Homo_sapiens
ENSXETG00000000619xrn19984.514ENSAPOG00000000622xrn19376.017Acanthochromis_polyacanthus
ENSXETG00000000619xrn19787.903ENSAMEG00000012538XRN110067.063Ailuropoda_melanoleuca
ENSXETG00000000619xrn19984.555ENSACIG00000001057xrn19872.059Amphilophus_citrinellus
ENSXETG00000000619xrn19984.777ENSAOCG00000014097xrn19966.667Amphiprion_ocellaris
ENSXETG00000000619xrn19985.039ENSAPEG00000006620xrn19962.289Amphiprion_percula
ENSXETG00000000619xrn19980.366ENSATEG00000009752xrn19970.710Anabas_testudineus
ENSXETG00000000619xrn19087.608ENSAPLG00000004905XRN110067.563Anas_platyrhynchos
ENSXETG00000000619xrn19988.021ENSACAG00000004985XRN110065.336Anolis_carolinensis
ENSXETG00000000619xrn19988.802ENSANAG00000029013XRN19980.071Aotus_nancymaae
ENSXETG00000000619xrn19984.777ENSACLG00000004806xrn19960.511Astatotilapia_calliptera
ENSXETG00000000619xrn19783.333ENSAMXG00000019370xrn19597.087Astyanax_mexicanus
ENSXETG00000000619xrn19788.441ENSBTAG00000011524XRN110069.709Bos_taurus
ENSXETG00000000619xrn19562.735WBGene00012730xrn-17837.829Caenorhabditis_elegans
ENSXETG00000000619xrn19988.542ENSCJAG00000001872XRN110069.356Callithrix_jacchus
ENSXETG00000000619xrn19988.802ENSCAFG00000007783XRN110068.491Canis_familiaris
ENSXETG00000000619xrn19988.802ENSCAFG00020009120XRN19980.975Canis_lupus_dingo
ENSXETG00000000619xrn19788.441ENSCHIG00000019192XRN19967.825Capra_hircus
ENSXETG00000000619xrn19788.441ENSTSYG00000002705XRN110069.195Carlito_syrichta
ENSXETG00000000619xrn16392.308ENSCAPG00000004604-9491.667Cavia_aperea
ENSXETG00000000619xrn19988.802ENSCCAG00000034800XRN19982.780Cebus_capucinus
ENSXETG00000000619xrn19788.978ENSCATG00000041794XRN110069.240Cercocebus_atys
ENSXETG00000000619xrn19788.978ENSCLAG00000001451XRN19982.622Chinchilla_lanigera
ENSXETG00000000619xrn19788.978ENSCSAG00000011265XRN110069.356Chlorocebus_sabaeus
ENSXETG00000000619xrn15596.104ENSCHOG00000013961-5696.104Choloepus_hoffmanni
ENSXETG00000000619xrn19669.648ENSCING00000001334-9570.270Ciona_intestinalis
ENSXETG00000000619xrn19671.545ENSCSAVG00000008584-8650.000Ciona_savignyi
ENSXETG00000000619xrn19988.802ENSCANG00000037495XRN19982.780Colobus_angolensis_palliatus
ENSXETG00000000619xrn19988.542ENSCGRG00001019411Xrn19982.306Cricetulus_griseus_chok1gshd
ENSXETG00000000619xrn19988.542ENSCGRG00000012464Xrn19982.306Cricetulus_griseus_crigri
ENSXETG00000000619xrn19985.789ENSCSEG00000021285xrn19496.154Cynoglossus_semilaevis
ENSXETG00000000619xrn19786.290ENSCVAG00000013089xrn19971.668Cyprinodon_variegatus
ENSXETG00000000619xrn19787.634ENSDARG00000091652xrn19880.591Danio_rerio
ENSXETG00000000619xrn19787.634ENSDORG00000013833Xrn110067.162Dipodomys_ordii
ENSXETG00000000619xrn19560.000FBgn0020261pcm7240.132Drosophila_melanogaster
ENSXETG00000000619xrn18682.883ENSETEG00000003978XRN18883.871Echinops_telfairi
ENSXETG00000000619xrn19788.978ENSEASG00005002687XRN19983.254Equus_asinus_asinus
ENSXETG00000000619xrn19788.978ENSECAG00000008301XRN110069.217Equus_caballus
ENSXETG00000000619xrn19788.710ENSEEUG00000011323XRN19270.674Erinaceus_europaeus
ENSXETG00000000619xrn19787.634ENSELUG00000000169xrn110060.977Esox_lucius
ENSXETG00000000619xrn19789.247ENSFCAG00000027589XRN19984.902Felis_catus
ENSXETG00000000619xrn19787.634ENSFALG00000007021XRN110066.982Ficedula_albicollis
ENSXETG00000000619xrn19788.441ENSFDAG00000020494XRN19983.570Fukomys_damarensis
ENSXETG00000000619xrn17569.655ENSFHEG00000017356-9868.958Fundulus_heteroclitus
ENSXETG00000000619xrn19985.302ENSGMOG00000006396xrn18368.231Gadus_morhua
ENSXETG00000000619xrn19787.366ENSGALG00000002706XRN110066.778Gallus_gallus
ENSXETG00000000619xrn19984.777ENSGACG00000014328xrn110060.045Gasterosteus_aculeatus
ENSXETG00000000619xrn19786.828ENSGAGG00000017535XRN19969.413Gopherus_agassizii
ENSXETG00000000619xrn19788.441ENSGGOG00000008047XRN110069.021Gorilla_gorilla
ENSXETG00000000619xrn19980.890ENSHBUG00000005908xrn19872.279Haplochromis_burtoni
ENSXETG00000000619xrn19788.441ENSHGLG00000014476XRN19982.622Heterocephalus_glaber_female
ENSXETG00000000619xrn19788.441ENSHGLG00100015130XRN19982.622Heterocephalus_glaber_male
ENSXETG00000000619xrn19984.474ENSHCOG00000014062xrn19971.151Hippocampus_comes
ENSXETG00000000619xrn19787.634ENSIPUG00000015229xrn110060.803Ictalurus_punctatus
ENSXETG00000000619xrn19788.978ENSSTOG00000013552XRN19983.412Ictidomys_tridecemlineatus
ENSXETG00000000619xrn19088.184ENSJJAG00000010863Xrn19982.867Jaculus_jaculus
ENSXETG00000000619xrn19985.039ENSKMAG00000021356xrn19575.681Kryptolebias_marmoratus
ENSXETG00000000619xrn19986.089ENSLBEG00000018656xrn19995.238Labrus_bergylta
ENSXETG00000000619xrn19988.021ENSLACG00000009020XRN110066.742Latimeria_chalumnae
ENSXETG00000000619xrn19787.634ENSLOCG00000007944xrn110064.564Lepisosteus_oculatus
ENSXETG00000000619xrn19788.710ENSLAFG00000015426XRN110080.561Loxodonta_africana
ENSXETG00000000619xrn19788.978ENSMFAG00000032599XRN110069.298Macaca_fascicularis
ENSXETG00000000619xrn19788.978ENSMMUG00000014038XRN110069.298Macaca_mulatta
ENSXETG00000000619xrn19788.710ENSMNEG00000034217XRN110069.240Macaca_nemestrina
ENSXETG00000000619xrn19988.802ENSMLEG00000041349-9983.553Mandrillus_leucophaeus
ENSXETG00000000619xrn19985.039ENSMAMG00000013219xrn19475.620Mastacembelus_armatus
ENSXETG00000000619xrn19985.039ENSMZEG00005015099xrn19960.511Maylandia_zebra
ENSXETG00000000619xrn19182.235ENSMGAG00000006333XRN110066.935Meleagris_gallopavo
ENSXETG00000000619xrn19789.247ENSMICG00000048948XRN19697.087Microcebus_murinus
ENSXETG00000000619xrn19988.281ENSMOCG00000008665Xrn19982.148Microtus_ochrogaster
ENSXETG00000000619xrn17381.786ENSMMOG00000020896-9669.301Mola_mola
ENSXETG00000000619xrn19989.062ENSMODG00000021236XRN110069.427Monodelphis_domestica
ENSXETG00000000619xrn19784.409ENSMALG00000004098xrn110058.015Monopterus_albus
ENSXETG00000000619xrn19988.542MGP_CAROLIEiJ_G0032535Xrn110095.000Mus_caroli
ENSXETG00000000619xrn19988.542ENSMUSG00000032410Xrn110095.000Mus_musculus
ENSXETG00000000619xrn19988.542MGP_PahariEiJ_G0015404Xrn110095.000Mus_pahari
ENSXETG00000000619xrn19988.542MGP_SPRETEiJ_G0033678Xrn110095.000Mus_spretus
ENSXETG00000000619xrn19789.247ENSMPUG00000012040XRN110068.934Mustela_putorius_furo
ENSXETG00000000619xrn19989.062ENSMLUG00000016885XRN110066.912Myotis_lucifugus
ENSXETG00000000619xrn19781.183ENSNGAG00000023964Xrn19978.006Nannospalax_galili
ENSXETG00000000619xrn19988.802ENSNLEG00000004726XRN110069.084Nomascus_leucogenys
ENSXETG00000000619xrn17197.938ENSMEUG00000014473-7298.039Notamacropus_eugenii
ENSXETG00000000619xrn19779.570ENSOPRG00000007337-7873.248Ochotona_princeps
ENSXETG00000000619xrn19985.827ENSONIG00000016673xrn19965.152Oreochromis_niloticus
ENSXETG00000000619xrn19266.226ENSOANG00000006735XRN19966.604Ornithorhynchus_anatinus
ENSXETG00000000619xrn19789.516ENSOCUG00000001861XRN110068.850Oryctolagus_cuniculus
ENSXETG00000000619xrn19985.827ENSORLG00000013005xrn110061.114Oryzias_latipes
ENSXETG00000000619xrn19985.827ENSORLG00020005559xrn110061.610Oryzias_latipes_hni
ENSXETG00000000619xrn19985.302ENSORLG00015022523xrn110061.298Oryzias_latipes_hsok
ENSXETG00000000619xrn19986.614ENSOMEG00000015397xrn110072.478Oryzias_melastigma
ENSXETG00000000619xrn19788.978ENSOGAG00000000170XRN110067.751Otolemur_garnettii
ENSXETG00000000619xrn19788.710ENSOARG00000006343XRN19969.656Ovis_aries
ENSXETG00000000619xrn19788.710ENSPPAG00000010180XRN110069.298Pan_paniscus
ENSXETG00000000619xrn19789.247ENSPPRG00000007125XRN110069.271Panthera_pardus
ENSXETG00000000619xrn19788.978ENSPTIG00000021081XRN110069.217Panthera_tigris_altaica
ENSXETG00000000619xrn19788.710ENSPTRG00000015482XRN110069.240Pan_troglodytes
ENSXETG00000000619xrn19788.978ENSPANG00000010638XRN110069.240Papio_anubis
ENSXETG00000000619xrn19787.668ENSPSIG00000018050XRN110068.356Pelodiscus_sinensis
ENSXETG00000000619xrn19786.559ENSPMGG00000002648xrn19877.865Periophthalmus_magnuspinnatus
ENSXETG00000000619xrn19988.802ENSPEMG00000020610Xrn19982.306Peromyscus_maniculatus_bairdii
ENSXETG00000000619xrn19075.862ENSPMAG00000002975xrn19077.650Petromyzon_marinus
ENSXETG00000000619xrn19989.062ENSPCIG00000028735XRN19984.019Phascolarctos_cinereus
ENSXETG00000000619xrn19885.372ENSPFOG00000013932xrn19963.614Poecilia_formosa
ENSXETG00000000619xrn19885.638ENSPLAG00000021653xrn19963.774Poecilia_latipinna
ENSXETG00000000619xrn110084.156ENSPMEG00000003076xrn19564.603Poecilia_mexicana
ENSXETG00000000619xrn110084.156ENSPREG00000021147xrn110060.506Poecilia_reticulata
ENSXETG00000000619xrn19788.978ENSPPYG00000014172XRN110068.968Pongo_abelii
ENSXETG00000000619xrn19087.320ENSPCAG00000005638XRN19667.790Procavia_capensis
ENSXETG00000000619xrn19788.441ENSPCOG00000013089XRN19982.622Propithecus_coquereli
ENSXETG00000000619xrn19088.439ENSPVAG00000016265XRN19676.797Pteropus_vampyrus
ENSXETG00000000619xrn19984.514ENSPNYG00000010570xrn19960.504Pundamilia_nyererei
ENSXETG00000000619xrn19782.353ENSPNAG00000023531xrn110059.886Pygocentrus_nattereri
ENSXETG00000000619xrn19788.441ENSRNOG00000042951Xrn110066.724Rattus_norvegicus
ENSXETG00000000619xrn19788.978ENSRBIG00000041227XRN110069.258Rhinopithecus_bieti
ENSXETG00000000619xrn19988.542ENSRROG00000033764-10097.087Rhinopithecus_roxellana
ENSXETG00000000619xrn19652.989YGL173CXRN17254.472Saccharomyces_cerevisiae
ENSXETG00000000619xrn19988.802ENSSBOG00000029561XRN110069.600Saimiri_boliviensis_boliviensis
ENSXETG00000000619xrn19388.858ENSSHAG00000016207XRN110069.565Sarcophilus_harrisii
ENSXETG00000000619xrn19986.162ENSSFOG00015024211xrn110061.407Scleropages_formosus
ENSXETG00000000619xrn19985.564ENSSMAG00000016534xrn110059.356Scophthalmus_maximus
ENSXETG00000000619xrn19986.089ENSSDUG00000010306xrn19771.498Seriola_dumerili
ENSXETG00000000619xrn19986.089ENSSLDG00000021543xrn19971.463Seriola_lalandi_dorsalis
ENSXETG00000000619xrn19087.896ENSSARG00000007741-8273.864Sorex_araneus
ENSXETG00000000619xrn17485.263ENSSPUG00000010779-9681.628Sphenodon_punctatus
ENSXETG00000000619xrn17678.114ENSSPAG00000009856-9675.456Stegastes_partitus
ENSXETG00000000619xrn19787.903ENSTGUG00000008498XRN110069.878Taeniopygia_guttata
ENSXETG00000000619xrn110084.156ENSTRUG00000004895xrn19677.119Takifugu_rubripes
ENSXETG00000000619xrn19884.615ENSTNIG00000017615xrn110059.182Tetraodon_nigroviridis
ENSXETG00000000619xrn19787.634ENSTBEG00000003256XRN18489.544Tupaia_belangeri
ENSXETG00000000619xrn19784.140ENSTTRG00000012914XRN110065.988Tursiops_truncatus
ENSXETG00000000619xrn19783.333ENSUAMG00000001608XRN19978.956Ursus_americanus
ENSXETG00000000619xrn19788.978ENSUMAG00000013625XRN110068.924Ursus_maritimus
ENSXETG00000000619xrn19788.978ENSVPAG00000004690XRN110067.093Vicugna_pacos
ENSXETG00000000619xrn19788.978ENSVVUG00000024461XRN19983.254Vulpes_vulpes
ENSXETG00000000619xrn110084.675ENSXCOG00000007917xrn110059.713Xiphophorus_couchianus
ENSXETG00000000619xrn19885.638ENSXMAG00000018320xrn19871.990Xiphophorus_maculatus

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