EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXETG00000001243 (Gene tree)
Gene ID: -
Gene Symbol: snrnp200
Alias: -
Full Name: small nuclear ribonucleoprotein%2C U5 200kDa subunit
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Minus strand
Length: 35275 bases
Position: chrGL172666.1:1129757-1165031
Accession: XB-GENE-981975
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000002684	ResIII	PF04851.15	2.8e-27	1	2
ENSXETP00000002684	ResIII	PF04851.15	2.8e-27	2	2
ENSXETP00000002684	DEAD	PF00270.29	3.5e-53	1	2
ENSXETP00000002684	DEAD	PF00270.29	3.5e-53	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000002683	-	1408	-	ENSXETP00000002683	468 (aa)	-	F7B7N7
ENSXETT00000002684	-	6810	XM_002932535	ENSXETP00000002684	2138 (aa)	XP_002932581	F7B7N1

Gene Model

Click here to download ENSXETG00000001243's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000001243's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXETG00000001243	snrnp200	78	42.152	ENSXETG00000032212	-	98	42.152

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000001243	snrnp200	100	94.343	ENSG00000144028	SNRNP200	100	94.343	Homo_sapiens
ENSXETG00000001243	snrnp200	99	90.474	ENSAPOG00000010223	snrnp200	99	90.412	Acanthochromis_polyacanthus
ENSXETG00000001243	snrnp200	100	94.390	ENSAMEG00000008996	SNRNP200	100	94.390	Ailuropoda_melanoleuca
ENSXETG00000001243	snrnp200	97	89.984	ENSACIG00000001764	snrnp200	98	89.984	Amphilophus_citrinellus
ENSXETG00000001243	snrnp200	99	90.333	ENSAOCG00000024593	snrnp200	100	89.877	Amphiprion_ocellaris
ENSXETG00000001243	snrnp200	97	89.930	ENSAPEG00000012554	snrnp200	100	89.930	Amphiprion_percula
ENSXETG00000001243	snrnp200	99	90.380	ENSATEG00000022522	snrnp200	99	90.318	Anabas_testudineus
ENSXETG00000001243	snrnp200	99	94.397	ENSAPLG00000004313	SNRNP200	100	94.397	Anas_platyrhynchos
ENSXETG00000001243	snrnp200	99	93.946	ENSACAG00000000434	SNRNP200	100	93.946	Anolis_carolinensis
ENSXETG00000001243	snrnp200	100	89.577	ENSANAG00000036625	SNRNP200	100	90.592	Aotus_nancymaae
ENSXETG00000001243	snrnp200	99	90.380	ENSACLG00000011188	snrnp200	99	90.318	Astatotilapia_calliptera
ENSXETG00000001243	snrnp200	99	89.676	ENSAMXG00000005684	snrnp200	99	89.616	Astyanax_mexicanus
ENSXETG00000001243	snrnp200	100	94.156	ENSBTAG00000000848	SNRNP200	100	94.156	Bos_taurus
ENSXETG00000001243	snrnp200	100	94.343	ENSCJAG00000007514	SNRNP200	100	94.343	Callithrix_jacchus
ENSXETG00000001243	snrnp200	100	93.616	ENSCAFG00020019979	SNRNP200	100	95.457	Canis_lupus_dingo
ENSXETG00000001243	snrnp200	100	94.250	ENSCHIG00000020611	SNRNP200	100	94.250	Capra_hircus
ENSXETG00000001243	snrnp200	100	94.343	ENSTSYG00000010467	SNRNP200	100	94.343	Carlito_syrichta
ENSXETG00000001243	snrnp200	99	93.897	ENSCAPG00000017234	SNRNP200	99	93.897	Cavia_aperea
ENSXETG00000001243	snrnp200	100	94.203	ENSCPOG00000006776	SNRNP200	100	94.203	Cavia_porcellus
ENSXETG00000001243	snrnp200	100	94.343	ENSCCAG00000033962	SNRNP200	100	94.343	Cebus_capucinus
ENSXETG00000001243	snrnp200	100	94.343	ENSCATG00000015790	SNRNP200	100	94.343	Cercocebus_atys
ENSXETG00000001243	snrnp200	100	94.296	ENSCLAG00000004116	SNRNP200	100	94.296	Chinchilla_lanigera
ENSXETG00000001243	snrnp200	100	94.343	ENSCSAG00000017369	SNRNP200	100	94.343	Chlorocebus_sabaeus
ENSXETG00000001243	snrnp200	74	97.638	ENSCHOG00000012981	-	59	97.638	Choloepus_hoffmanni
ENSXETG00000001243	snrnp200	100	94.398	ENSCPBG00000022571	SNRNP200	100	94.398	Chrysemys_picta_bellii
ENSXETG00000001243	snrnp200	99	75.873	ENSCING00000005082	-	99	76.117	Ciona_intestinalis
ENSXETG00000001243	snrnp200	100	88.998	ENSCANG00000033932	SNRNP200	100	94.085	Colobus_angolensis_palliatus
ENSXETG00000001243	snrnp200	100	94.343	ENSCGRG00001022610	Snrnp200	100	94.343	Cricetulus_griseus_chok1gshd
ENSXETG00000001243	snrnp200	100	93.838	ENSCGRG00000016472	Snrnp200	100	93.838	Cricetulus_griseus_crigri
ENSXETG00000001243	snrnp200	100	89.663	ENSCSEG00000016399	snrnp200	100	89.663	Cynoglossus_semilaevis
ENSXETG00000001243	snrnp200	100	85.781	ENSCVAG00000017631	snrnp200	99	85.781	Cyprinodon_variegatus
ENSXETG00000001243	snrnp200	100	89.383	ENSDARG00000077536	snrnp200	99	89.383	Danio_rerio
ENSXETG00000001243	snrnp200	100	92.987	ENSDNOG00000011227	SNRNP200	100	92.987	Dasypus_novemcinctus
ENSXETG00000001243	snrnp200	100	91.741	ENSDORG00000005861	Snrnp200	100	91.787	Dipodomys_ordii
ENSXETG00000001243	snrnp200	100	73.222	FBgn0263599	l(3)72Ab	99	73.281	Drosophila_melanogaster
ENSXETG00000001243	snrnp200	95	93.885	ENSETEG00000000162	SNRNP200	74	93.885	Echinops_telfairi
ENSXETG00000001243	snrnp200	83	80.090	ENSEBUG00000016524	snrnp200	95	80.090	Eptatretus_burgeri
ENSXETG00000001243	snrnp200	100	93.343	ENSEASG00005001884	SNRNP200	100	93.203	Equus_asinus_asinus
ENSXETG00000001243	snrnp200	100	94.390	ENSECAG00000019675	SNRNP200	100	94.390	Equus_caballus
ENSXETG00000001243	snrnp200	88	100.000	ENSEEUG00000012178	SNRNP200	93	100.000	Erinaceus_europaeus
ENSXETG00000001243	snrnp200	99	90.474	ENSELUG00000018948	snrnp200	99	90.412	Esox_lucius
ENSXETG00000001243	snrnp200	100	94.437	ENSFCAG00000010699	SNRNP200	100	94.437	Felis_catus
ENSXETG00000001243	snrnp200	93	91.071	ENSFALG00000001368	-	95	91.071	Ficedula_albicollis
ENSXETG00000001243	snrnp200	100	94.203	ENSFDAG00000004683	SNRNP200	100	94.203	Fukomys_damarensis
ENSXETG00000001243	snrnp200	100	87.839	ENSFHEG00000003786	snrnp200	99	87.839	Fundulus_heteroclitus
ENSXETG00000001243	snrnp200	100	89.309	ENSGMOG00000004881	snrnp200	99	89.309	Gadus_morhua
ENSXETG00000001243	snrnp200	100	88.073	ENSGAFG00000010807	snrnp200	99	88.073	Gambusia_affinis
ENSXETG00000001243	snrnp200	100	89.874	ENSGACG00000011474	snrnp200	99	89.781	Gasterosteus_aculeatus
ENSXETG00000001243	snrnp200	95	95.010	ENSGAGG00000016069	SNRNP200	96	100.000	Gopherus_agassizii
ENSXETG00000001243	snrnp200	100	94.343	ENSGGOG00000005174	SNRNP200	100	94.343	Gorilla_gorilla
ENSXETG00000001243	snrnp200	97	87.667	ENSHBUG00000011322	snrnp200	99	87.714	Haplochromis_burtoni
ENSXETG00000001243	snrnp200	100	94.250	ENSHGLG00000006654	SNRNP200	100	94.250	Heterocephalus_glaber_female
ENSXETG00000001243	snrnp200	100	94.250	ENSHGLG00100018594	SNRNP200	100	94.250	Heterocephalus_glaber_male
ENSXETG00000001243	snrnp200	100	94.296	ENSSTOG00000016351	SNRNP200	100	94.296	Ictidomys_tridecemlineatus
ENSXETG00000001243	snrnp200	100	94.203	ENSJJAG00000023659	Snrnp200	100	94.203	Jaculus_jaculus
ENSXETG00000001243	snrnp200	100	87.459	ENSKMAG00000003665	snrnp200	99	87.459	Kryptolebias_marmoratus
ENSXETG00000001243	snrnp200	100	90.365	ENSLBEG00000021585	snrnp200	99	90.365	Labrus_bergylta
ENSXETG00000001243	snrnp200	82	93.714	ENSLACG00000000226	SNRNP200	100	92.982	Latimeria_chalumnae
ENSXETG00000001243	snrnp200	100	91.304	ENSLOCG00000015198	snrnp200	99	91.304	Lepisosteus_oculatus
ENSXETG00000001243	snrnp200	100	94.250	ENSLAFG00000015626	SNRNP200	100	94.250	Loxodonta_africana
ENSXETG00000001243	snrnp200	100	94.296	ENSMFAG00000040174	SNRNP200	99	95.906	Macaca_fascicularis
ENSXETG00000001243	snrnp200	100	94.296	ENSMMUG00000023261	SNRNP200	100	94.296	Macaca_mulatta
ENSXETG00000001243	snrnp200	100	94.250	ENSMNEG00000032398	SNRNP200	100	94.250	Macaca_nemestrina
ENSXETG00000001243	snrnp200	100	94.343	ENSMLEG00000019083	SNRNP200	99	95.906	Mandrillus_leucophaeus
ENSXETG00000001243	snrnp200	100	90.042	ENSMAMG00000007851	snrnp200	99	89.995	Mastacembelus_armatus
ENSXETG00000001243	snrnp200	97	87.667	ENSMZEG00005010787	snrnp200	99	87.714	Maylandia_zebra
ENSXETG00000001243	snrnp200	97	94.106	ENSMGAG00000001831	SNRNP200	99	94.140	Meleagris_gallopavo
ENSXETG00000001243	snrnp200	100	94.390	ENSMAUG00000011825	Snrnp200	100	94.390	Mesocricetus_auratus
ENSXETG00000001243	snrnp200	100	94.390	ENSMICG00000004710	SNRNP200	100	94.390	Microcebus_murinus
ENSXETG00000001243	snrnp200	100	92.333	ENSMOCG00000011814	Snrnp200	100	92.333	Microtus_ochrogaster
ENSXETG00000001243	snrnp200	99	88.691	ENSMMOG00000014167	snrnp200	99	88.634	Mola_mola
ENSXETG00000001243	snrnp200	100	94.296	ENSMODG00000008475	SNRNP200	100	94.296	Monodelphis_domestica
ENSXETG00000001243	snrnp200	99	90.568	ENSMALG00000001973	snrnp200	99	90.505	Monopterus_albus
ENSXETG00000001243	snrnp200	100	94.296	MGP_CAROLIEiJ_G0024250	Snrnp200	100	94.296	Mus_caroli
ENSXETG00000001243	snrnp200	100	94.250	ENSMUSG00000003660	Snrnp200	100	94.250	Mus_musculus
ENSXETG00000001243	snrnp200	100	94.296	MGP_PahariEiJ_G0025695	Snrnp200	100	94.296	Mus_pahari
ENSXETG00000001243	snrnp200	100	94.250	MGP_SPRETEiJ_G0025170	Snrnp200	100	94.250	Mus_spretus
ENSXETG00000001243	snrnp200	100	94.437	ENSMPUG00000008949	SNRNP200	100	94.437	Mustela_putorius_furo
ENSXETG00000001243	snrnp200	100	94.024	ENSMLUG00000010493	SNRNP200	100	94.024	Myotis_lucifugus
ENSXETG00000001243	snrnp200	100	90.930	ENSMLUG00000027511	-	100	90.930	Myotis_lucifugus
ENSXETG00000001243	snrnp200	100	94.343	ENSNGAG00000021993	Snrnp200	100	94.343	Nannospalax_galili
ENSXETG00000001243	snrnp200	90	90.255	ENSNBRG00000017960	snrnp200	98	90.255	Neolamprologus_brichardi
ENSXETG00000001243	snrnp200	100	89.926	ENSNLEG00000000025	SNRNP200	100	89.926	Nomascus_leucogenys
ENSXETG00000001243	snrnp200	100	95.000	ENSMEUG00000010532	SNRNP200	79	94.444	Notamacropus_eugenii
ENSXETG00000001243	snrnp200	96	93.055	ENSOPRG00000015464	SNRNP200	100	90.743	Ochotona_princeps
ENSXETG00000001243	snrnp200	100	94.203	ENSODEG00000008366	SNRNP200	100	94.203	Octodon_degus
ENSXETG00000001243	snrnp200	99	90.380	ENSONIG00000010714	snrnp200	99	90.318	Oreochromis_niloticus
ENSXETG00000001243	snrnp200	100	94.296	ENSOCUG00000009864	SNRNP200	100	94.296	Oryctolagus_cuniculus
ENSXETG00000001243	snrnp200	100	89.897	ENSORLG00000012286	snrnp200	100	89.897	Oryzias_latipes
ENSXETG00000001243	snrnp200	100	89.991	ENSORLG00020004648	snrnp200	100	89.991	Oryzias_latipes_hni
ENSXETG00000001243	snrnp200	100	89.944	ENSORLG00015019114	snrnp200	100	89.944	Oryzias_latipes_hsok
ENSXETG00000001243	snrnp200	99	90.239	ENSOMEG00000011834	snrnp200	99	90.178	Oryzias_melastigma
ENSXETG00000001243	snrnp200	100	94.343	ENSOGAG00000006879	SNRNP200	100	94.343	Otolemur_garnettii
ENSXETG00000001243	snrnp200	100	93.364	ENSOARG00000013949	SNRNP200	100	93.364	Ovis_aries
ENSXETG00000001243	snrnp200	100	94.343	ENSPPAG00000041559	SNRNP200	100	94.343	Pan_paniscus
ENSXETG00000001243	snrnp200	100	94.437	ENSPPRG00000004435	SNRNP200	100	94.437	Panthera_pardus
ENSXETG00000001243	snrnp200	100	93.969	ENSPTIG00000006380	SNRNP200	100	93.969	Panthera_tigris_altaica
ENSXETG00000001243	snrnp200	100	94.343	ENSPTRG00000012230	SNRNP200	100	94.343	Pan_troglodytes
ENSXETG00000001243	snrnp200	100	94.343	ENSPANG00000006017	SNRNP200	100	94.343	Papio_anubis
ENSXETG00000001243	snrnp200	100	90.318	ENSPKIG00000014762	snrnp200	99	90.318	Paramormyrops_kingsleyae
ENSXETG00000001243	snrnp200	100	93.271	ENSPSIG00000008580	SNRNP200	100	93.271	Pelodiscus_sinensis
ENSXETG00000001243	snrnp200	100	94.390	ENSPCIG00000023050	SNRNP200	100	94.390	Phascolarctos_cinereus
ENSXETG00000001243	snrnp200	100	90.323	ENSPFOG00000015110	snrnp200	99	90.323	Poecilia_formosa
ENSXETG00000001243	snrnp200	97	90.159	ENSPLAG00000006711	snrnp200	99	90.159	Poecilia_latipinna
ENSXETG00000001243	snrnp200	97	90.159	ENSPMEG00000021166	snrnp200	99	90.159	Poecilia_mexicana
ENSXETG00000001243	snrnp200	100	90.458	ENSPREG00000008875	snrnp200	99	90.458	Poecilia_reticulata
ENSXETG00000001243	snrnp200	100	94.343	ENSPPYG00000012068	SNRNP200	100	94.343	Pongo_abelii
ENSXETG00000001243	snrnp200	95	96.795	ENSPCAG00000008536	SNRNP200	86	97.959	Procavia_capensis
ENSXETG00000001243	snrnp200	100	94.343	ENSPCOG00000024608	SNRNP200	100	94.343	Propithecus_coquereli
ENSXETG00000001243	snrnp200	96	94.592	ENSPVAG00000005860	SNRNP200	93	94.592	Pteropus_vampyrus
ENSXETG00000001243	snrnp200	99	85.821	ENSPNYG00000017476	snrnp200	99	85.774	Pundamilia_nyererei
ENSXETG00000001243	snrnp200	100	85.500	ENSPNAG00000010998	snrnp200	99	85.500	Pygocentrus_nattereri
ENSXETG00000001243	snrnp200	100	94.390	ENSRNOG00000012157	Snrnp200	100	94.390	Rattus_norvegicus
ENSXETG00000001243	snrnp200	100	94.343	ENSRBIG00000044690	-	100	94.343	Rhinopithecus_bieti
ENSXETG00000001243	snrnp200	100	94.343	ENSRROG00000037952	-	100	94.343	Rhinopithecus_roxellana
ENSXETG00000001243	snrnp200	100	94.343	ENSSBOG00000035471	SNRNP200	100	94.343	Saimiri_boliviensis_boliviensis
ENSXETG00000001243	snrnp200	97	94.251	ENSSHAG00000000758	SNRNP200	99	94.286	Sarcophilus_harrisii
ENSXETG00000001243	snrnp200	99	90.802	ENSSFOG00015018826	snrnp200	99	90.739	Scleropages_formosus
ENSXETG00000001243	snrnp200	99	90.286	ENSSMAG00000005463	snrnp200	99	90.225	Scophthalmus_maximus
ENSXETG00000001243	snrnp200	99	90.427	ENSSDUG00000021410	snrnp200	99	90.365	Seriola_dumerili
ENSXETG00000001243	snrnp200	99	90.333	ENSSLDG00000010884	snrnp200	99	90.271	Seriola_lalandi_dorsalis
ENSXETG00000001243	snrnp200	95	92.761	ENSSARG00000010728	SNRNP200	96	92.761	Sorex_araneus
ENSXETG00000001243	snrnp200	100	94.296	ENSSPUG00000003726	-	100	94.296	Sphenodon_punctatus
ENSXETG00000001243	snrnp200	99	90.568	ENSSPAG00000001842	snrnp200	99	90.505	Stegastes_partitus
ENSXETG00000001243	snrnp200	100	94.437	ENSSSCG00000008127	SNRNP200	100	94.437	Sus_scrofa
ENSXETG00000001243	snrnp200	99	85.583	ENSTGUG00000014475	-	100	85.583	Taeniopygia_guttata
ENSXETG00000001243	snrnp200	99	90.099	ENSTRUG00000001307	snrnp200	99	90.037	Takifugu_rubripes
ENSXETG00000001243	snrnp200	100	85.255	ENSTNIG00000004320	snrnp200	100	78.815	Tetraodon_nigroviridis
ENSXETG00000001243	snrnp200	83	97.653	ENSTBEG00000003329	-	67	97.653	Tupaia_belangeri
ENSXETG00000001243	snrnp200	100	94.063	ENSTTRG00000004983	SNRNP200	100	94.063	Tursiops_truncatus
ENSXETG00000001243	snrnp200	75	87.306	ENSUAMG00000008395	-	95	87.209	Ursus_americanus
ENSXETG00000001243	snrnp200	100	94.437	ENSUMAG00000012385	SNRNP200	100	94.437	Ursus_maritimus
ENSXETG00000001243	snrnp200	87	98.214	ENSVPAG00000006434	SNRNP200	66	98.214	Vicugna_pacos
ENSXETG00000001243	snrnp200	100	94.216	ENSVVUG00000026247	SNRNP200	100	94.216	Vulpes_vulpes
ENSXETG00000001243	snrnp200	97	90.412	ENSXMAG00000002058	snrnp200	98	90.412	Xiphophorus_maculatus