EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXETG00000001526 (Gene tree)
Gene ID: -
Gene Symbol: smarca1
Alias: -
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Plus strand
Length: 63160 bases
Position: chrGL172646.1:699016-762175
Accession: XB-GENE-492011
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000003192	ResIII	PF04851.15	3e-11	1	1
ENSXETP00000003192	DEAD	PF00270.29	2.3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000003192	-	2988	-	ENSXETP00000003192	996 (aa)	-	F6WU50

Gene Model

Click here to download ENSXETG00000001526's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000001526's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXETG00000001526	smarca1	54	39.310	ENSXETG00000026410	chd4	59	40.952
ENSXETG00000001526	smarca1	93	87.996	ENSXETG00000017566	smarca5	93	87.996
ENSXETG00000001526	smarca1	53	42.058	ENSXETG00000017194	CHD8	57	42.385

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000001526	smarca1	99	89.347	ENSG00000102038	SMARCA1	94	89.347	Homo_sapiens
ENSXETG00000001526	smarca1	97	84.671	ENSAPOG00000016035	smarca5	98	84.725	Acanthochromis_polyacanthus
ENSXETG00000001526	smarca1	99	88.370	ENSAMEG00000015218	SMARCA1	94	88.370	Ailuropoda_melanoleuca
ENSXETG00000001526	smarca1	90	84.761	ENSACIG00000016982	smarca5	99	84.865	Amphilophus_citrinellus
ENSXETG00000001526	smarca1	97	84.671	ENSAOCG00000015578	smarca5	95	83.927	Amphiprion_ocellaris
ENSXETG00000001526	smarca1	97	84.671	ENSAPEG00000011117	smarca5	99	84.716	Amphiprion_percula
ENSXETG00000001526	smarca1	98	83.947	ENSATEG00000012894	smarca5	95	83.622	Anabas_testudineus
ENSXETG00000001526	smarca1	98	92.872	ENSAPLG00000013149	SMARCA1	99	92.872	Anas_platyrhynchos
ENSXETG00000001526	smarca1	100	92.879	ENSACAG00000011376	SMARCA1	95	92.879	Anolis_carolinensis
ENSXETG00000001526	smarca1	99	84.121	ENSANAG00000023098	SMARCA1	94	84.121	Aotus_nancymaae
ENSXETG00000001526	smarca1	98	84.560	ENSACLG00000025356	smarca5	95	84.232	Astatotilapia_calliptera
ENSXETG00000001526	smarca1	97	85.109	ENSAMXG00000005709	smarca5	93	84.964	Astyanax_mexicanus
ENSXETG00000001526	smarca1	92	91.366	ENSAMXG00000011227	smarca1	99	92.039	Astyanax_mexicanus
ENSXETG00000001526	smarca1	99	89.347	ENSBTAG00000002292	SMARCA1	92	89.267	Bos_taurus
ENSXETG00000001526	smarca1	98	63.407	WBGene00002169	isw-1	97	63.508	Caenorhabditis_elegans
ENSXETG00000001526	smarca1	99	89.347	ENSCJAG00000002868	SMARCA1	94	89.347	Callithrix_jacchus
ENSXETG00000001526	smarca1	99	79.822	ENSCAFG00000018673	SMARCA1	99	80.235	Canis_familiaris
ENSXETG00000001526	smarca1	99	89.548	ENSCAFG00020001751	SMARCA1	94	89.548	Canis_lupus_dingo
ENSXETG00000001526	smarca1	99	89.357	ENSCHIG00000009837	SMARCA1	94	89.357	Capra_hircus
ENSXETG00000001526	smarca1	99	89.447	ENSTSYG00000004240	SMARCA1	96	90.010	Carlito_syrichta
ENSXETG00000001526	smarca1	99	88.024	ENSCPOG00000013601	SMARCA1	95	88.024	Cavia_porcellus
ENSXETG00000001526	smarca1	99	86.432	ENSCCAG00000030817	SMARCA1	94	86.432	Cebus_capucinus
ENSXETG00000001526	smarca1	99	88.370	ENSCATG00000015921	SMARCA1	92	90.387	Cercocebus_atys
ENSXETG00000001526	smarca1	99	88.655	ENSCLAG00000002171	SMARCA1	94	88.655	Chinchilla_lanigera
ENSXETG00000001526	smarca1	99	89.347	ENSCSAG00000008460	SMARCA1	94	89.347	Chlorocebus_sabaeus
ENSXETG00000001526	smarca1	100	93.280	ENSCPBG00000001146	SMARCA1	94	93.280	Chrysemys_picta_bellii
ENSXETG00000001526	smarca1	99	73.212	ENSCING00000004110	swi/snf	94	74.635	Ciona_intestinalis
ENSXETG00000001526	smarca1	99	73.166	ENSCSAVG00000004620	-	100	74.778	Ciona_savignyi
ENSXETG00000001526	smarca1	99	89.447	ENSCANG00000007183	SMARCA1	94	89.447	Colobus_angolensis_palliatus
ENSXETG00000001526	smarca1	99	87.952	ENSCGRG00001010776	Smarca1	94	87.952	Cricetulus_griseus_chok1gshd
ENSXETG00000001526	smarca1	98	88.127	ENSCGRG00000015301	Smarca1	96	88.266	Cricetulus_griseus_crigri
ENSXETG00000001526	smarca1	96	85.414	ENSCSEG00000000328	smarca5	95	83.723	Cynoglossus_semilaevis
ENSXETG00000001526	smarca1	98	83.947	ENSCVAG00000008668	smarca5	99	84.379	Cyprinodon_variegatus
ENSXETG00000001526	smarca1	99	88.322	ENSDARG00000012776	smarca1	98	88.322	Danio_rerio
ENSXETG00000001526	smarca1	99	83.858	ENSDARG00000052348	smarca5	95	83.858	Danio_rerio
ENSXETG00000001526	smarca1	98	89.918	ENSDNOG00000004315	SMARCA1	92	90.084	Dasypus_novemcinctus
ENSXETG00000001526	smarca1	98	89.403	ENSDORG00000009270	Smarca1	92	89.562	Dipodomys_ordii
ENSXETG00000001526	smarca1	98	73.360	FBgn0011604	Iswi	98	73.149	Drosophila_melanogaster
ENSXETG00000001526	smarca1	82	87.273	ENSETEG00000017426	SMARCA1	83	87.273	Echinops_telfairi
ENSXETG00000001526	smarca1	99	81.250	ENSEBUG00000001239	smarca5	98	81.250	Eptatretus_burgeri
ENSXETG00000001526	smarca1	99	85.556	ENSEASG00005008218	SMARCA1	99	85.455	Equus_asinus_asinus
ENSXETG00000001526	smarca1	99	89.357	ENSECAG00000012106	SMARCA1	94	89.357	Equus_caballus
ENSXETG00000001526	smarca1	80	90.066	ENSEEUG00000014927	SMARCA1	81	90.066	Erinaceus_europaeus
ENSXETG00000001526	smarca1	99	89.690	ENSELUG00000010515	smarca1	98	89.690	Esox_lucius
ENSXETG00000001526	smarca1	99	89.347	ENSFCAG00000018496	SMARCA1	94	89.347	Felis_catus
ENSXETG00000001526	smarca1	92	93.443	ENSFALG00000000209	SMARCA1	98	93.545	Ficedula_albicollis
ENSXETG00000001526	smarca1	98	88.810	ENSFDAG00000009818	SMARCA1	95	88.958	Fukomys_damarensis
ENSXETG00000001526	smarca1	98	84.254	ENSFHEG00000007687	smarca5	94	83.927	Fundulus_heteroclitus
ENSXETG00000001526	smarca1	96	93.743	ENSGALG00000008431	SMARCA1	95	93.743	Gallus_gallus
ENSXETG00000001526	smarca1	98	84.356	ENSGAFG00000017731	smarca5	95	84.028	Gambusia_affinis
ENSXETG00000001526	smarca1	97	93.210	ENSGAGG00000023575	SMARCA1	99	93.210	Gopherus_agassizii
ENSXETG00000001526	smarca1	71	85.085	ENSGGOG00000012841	-	95	95.455	Gorilla_gorilla
ENSXETG00000001526	smarca1	99	88.153	ENSHGLG00000003080	SMARCA1	94	88.153	Heterocephalus_glaber_female
ENSXETG00000001526	smarca1	99	87.612	ENSHGLG00100001102	SMARCA1	99	87.612	Heterocephalus_glaber_male
ENSXETG00000001526	smarca1	98	84.497	ENSHCOG00000005458	smarca5	95	84.028	Hippocampus_comes
ENSXETG00000001526	smarca1	99	88.342	ENSIPUG00000016905	Smarca1	99	88.889	Ictalurus_punctatus
ENSXETG00000001526	smarca1	99	84.045	ENSIPUG00000005229	SMARCA5	97	84.045	Ictalurus_punctatus
ENSXETG00000001526	smarca1	99	89.357	ENSSTOG00000014524	SMARCA1	94	89.701	Ictidomys_tridecemlineatus
ENSXETG00000001526	smarca1	98	89.198	ENSJJAG00000002593	Smarca1	94	87.912	Jaculus_jaculus
ENSXETG00000001526	smarca1	98	84.189	ENSKMAG00000003777	smarca5	95	83.723	Kryptolebias_marmoratus
ENSXETG00000001526	smarca1	93	84.871	ENSLBEG00000013295	SMARCA1	100	85.624	Labrus_bergylta
ENSXETG00000001526	smarca1	99	83.655	ENSLBEG00000018112	smarca5	95	83.655	Labrus_bergylta
ENSXETG00000001526	smarca1	100	91.775	ENSLACG00000016697	SMARCA1	98	91.775	Latimeria_chalumnae
ENSXETG00000001526	smarca1	99	91.566	ENSLOCG00000014591	smarca1	97	91.566	Lepisosteus_oculatus
ENSXETG00000001526	smarca1	99	88.523	ENSLAFG00000000896	SMARCA1	99	88.523	Loxodonta_africana
ENSXETG00000001526	smarca1	99	89.347	ENSMFAG00000002117	SMARCA1	95	90.198	Macaca_fascicularis
ENSXETG00000001526	smarca1	99	88.370	ENSMMUG00000008818	SMARCA1	97	90.426	Macaca_mulatta
ENSXETG00000001526	smarca1	99	88.370	ENSMNEG00000041768	SMARCA1	95	90.198	Macaca_nemestrina
ENSXETG00000001526	smarca1	99	89.347	ENSMLEG00000043198	SMARCA1	94	89.347	Mandrillus_leucophaeus
ENSXETG00000001526	smarca1	98	84.560	ENSMAMG00000014294	smarca5	94	84.232	Mastacembelus_armatus
ENSXETG00000001526	smarca1	98	84.560	ENSMZEG00005009369	smarca5	95	84.232	Maylandia_zebra
ENSXETG00000001526	smarca1	100	91.964	ENSMGAG00000007042	SMARCA1	99	91.964	Meleagris_gallopavo
ENSXETG00000001526	smarca1	98	88.127	ENSMAUG00000008133	Smarca1	92	88.266	Mesocricetus_auratus
ENSXETG00000001526	smarca1	99	89.558	ENSMICG00000015768	SMARCA1	94	89.558	Microcebus_murinus
ENSXETG00000001526	smarca1	99	87.712	ENSMOCG00000009464	Smarca1	94	87.712	Microtus_ochrogaster
ENSXETG00000001526	smarca1	98	82.299	ENSMMOG00000005547	smarca5	99	82.299	Mola_mola
ENSXETG00000001526	smarca1	99	92.300	ENSMODG00000013187	-	96	92.277	Monodelphis_domestica
ENSXETG00000001526	smarca1	98	84.189	ENSMALG00000002081	smarca5	96	83.814	Monopterus_albus
ENSXETG00000001526	smarca1	99	87.313	MGP_CAROLIEiJ_G0033034	Smarca1	94	87.313	Mus_caroli
ENSXETG00000001526	smarca1	99	87.413	ENSMUSG00000031099	Smarca1	94	87.413	Mus_musculus
ENSXETG00000001526	smarca1	99	87.113	MGP_PahariEiJ_G0031579	Smarca1	94	87.113	Mus_pahari
ENSXETG00000001526	smarca1	99	87.413	MGP_SPRETEiJ_G0034192	Smarca1	94	87.413	Mus_spretus
ENSXETG00000001526	smarca1	99	88.469	ENSMPUG00000017423	SMARCA1	89	88.469	Mustela_putorius_furo
ENSXETG00000001526	smarca1	99	87.611	ENSMLUG00000029614	SMARCA1	94	87.611	Myotis_lucifugus
ENSXETG00000001526	smarca1	98	89.048	ENSNGAG00000006492	Smarca1	92	89.200	Nannospalax_galili
ENSXETG00000001526	smarca1	98	84.560	ENSNBRG00000004463	smarca5	98	84.232	Neolamprologus_brichardi
ENSXETG00000001526	smarca1	99	87.575	ENSNLEG00000015179	SMARCA1	96	89.271	Nomascus_leucogenys
ENSXETG00000001526	smarca1	94	83.474	ENSMEUG00000008819	SMARCA1	99	83.474	Notamacropus_eugenii
ENSXETG00000001526	smarca1	98	88.505	ENSODEG00000012163	SMARCA1	92	88.648	Octodon_degus
ENSXETG00000001526	smarca1	98	84.560	ENSONIG00000009993	smarca5	95	84.232	Oreochromis_niloticus
ENSXETG00000001526	smarca1	97	93.416	ENSOANG00000002862	SMARCA1	99	93.416	Ornithorhynchus_anatinus
ENSXETG00000001526	smarca1	99	89.257	ENSOCUG00000001047	SMARCA1	94	89.257	Oryctolagus_cuniculus
ENSXETG00000001526	smarca1	98	85.010	ENSORLG00000021998	smarca5	94	84.537	Oryzias_latipes
ENSXETG00000001526	smarca1	98	85.113	ENSORLG00020017679	smarca5	94	84.639	Oryzias_latipes_hni
ENSXETG00000001526	smarca1	98	85.010	ENSORLG00015017210	smarca5	95	84.435	Oryzias_latipes_hsok
ENSXETG00000001526	smarca1	98	84.908	ENSOMEG00000000086	smarca5	95	84.334	Oryzias_melastigma
ENSXETG00000001526	smarca1	97	89.613	ENSOGAG00000004399	SMARCA1	92	89.773	Otolemur_garnettii
ENSXETG00000001526	smarca1	98	89.694	ENSOARG00000014638	SMARCA1	99	89.694	Ovis_aries
ENSXETG00000001526	smarca1	99	89.347	ENSPPAG00000034647	SMARCA1	94	89.347	Pan_paniscus
ENSXETG00000001526	smarca1	99	89.548	ENSPPRG00000008929	SMARCA1	94	89.548	Panthera_pardus
ENSXETG00000001526	smarca1	99	87.735	ENSPTIG00000000915	SMARCA1	97	87.735	Panthera_tigris_altaica
ENSXETG00000001526	smarca1	99	89.347	ENSPTRG00000049876	SMARCA1	92	90.387	Pan_troglodytes
ENSXETG00000001526	smarca1	99	89.347	ENSPANG00000003871	SMARCA1	94	89.347	Papio_anubis
ENSXETG00000001526	smarca1	95	90.221	ENSPKIG00000013411	smarca1	96	90.221	Paramormyrops_kingsleyae
ENSXETG00000001526	smarca1	100	91.964	ENSPSIG00000010101	SMARCA1	99	93.004	Pelodiscus_sinensis
ENSXETG00000001526	smarca1	98	88.741	ENSPEMG00000017503	Smarca1	92	88.889	Peromyscus_maniculatus_bairdii
ENSXETG00000001526	smarca1	100	92.578	ENSPCIG00000015460	SMARCA1	98	92.578	Phascolarctos_cinereus
ENSXETG00000001526	smarca1	98	84.394	ENSPFOG00000007649	smarca5	95	83.825	Poecilia_formosa
ENSXETG00000001526	smarca1	98	84.394	ENSPLAG00000003363	smarca5	95	83.825	Poecilia_latipinna
ENSXETG00000001526	smarca1	98	84.497	ENSPMEG00000019849	smarca5	95	83.927	Poecilia_mexicana
ENSXETG00000001526	smarca1	98	84.497	ENSPREG00000023250	smarca5	95	83.927	Poecilia_reticulata
ENSXETG00000001526	smarca1	99	86.533	ENSPPYG00000020703	SMARCA1	94	86.533	Pongo_abelii
ENSXETG00000001526	smarca1	78	83.871	ENSPCOG00000020722	SMARCA1	94	86.364	Propithecus_coquereli
ENSXETG00000001526	smarca1	92	89.161	ENSPVAG00000003805	SMARCA1	92	82.766	Pteropus_vampyrus
ENSXETG00000001526	smarca1	59	87.123	ENSPNYG00000012299	smarca5	91	86.216	Pundamilia_nyererei
ENSXETG00000001526	smarca1	99	88.153	ENSRNOG00000003762	Smarca1	94	88.153	Rattus_norvegicus
ENSXETG00000001526	smarca1	99	89.447	ENSRROG00000034167	SMARCA1	94	89.447	Rhinopithecus_roxellana
ENSXETG00000001526	smarca1	98	89.694	ENSSBOG00000020641	SMARCA1	99	89.694	Saimiri_boliviensis_boliviensis
ENSXETG00000001526	smarca1	97	85.920	ENSSHAG00000013518	SMARCA1	99	85.920	Sarcophilus_harrisii
ENSXETG00000001526	smarca1	98	84.545	ENSSFOG00015016794	smarca5	99	84.695	Scleropages_formosus
ENSXETG00000001526	smarca1	99	90.581	ENSSFOG00015009043	smarca1	98	90.581	Scleropages_formosus
ENSXETG00000001526	smarca1	98	83.215	ENSSMAG00000004801	smarca5	95	83.215	Scophthalmus_maximus
ENSXETG00000001526	smarca1	98	83.742	ENSSDUG00000020690	smarca5	95	83.418	Seriola_dumerili
ENSXETG00000001526	smarca1	98	83.742	ENSSLDG00000025190	smarca5	95	83.418	Seriola_lalandi_dorsalis
ENSXETG00000001526	smarca1	90	82.689	ENSSARG00000000842	SMARCA1	89	82.798	Sorex_araneus
ENSXETG00000001526	smarca1	96	93.952	ENSSPUG00000000590	SMARCA1	93	93.952	Sphenodon_punctatus
ENSXETG00000001526	smarca1	98	84.356	ENSSPAG00000002894	smarca5	96	84.835	Stegastes_partitus
ENSXETG00000001526	smarca1	98	90.432	ENSSSCG00000012649	SMARCA1	94	89.825	Sus_scrofa
ENSXETG00000001526	smarca1	98	92.770	ENSTGUG00000003899	-	99	92.770	Taeniopygia_guttata
ENSXETG00000001526	smarca1	98	84.458	ENSTRUG00000014094	smarca5	95	84.130	Takifugu_rubripes
ENSXETG00000001526	smarca1	97	83.333	ENSTNIG00000017717	smarca5	94	82.706	Tetraodon_nigroviridis
ENSXETG00000001526	smarca1	98	83.028	ENSTBEG00000014973	SMARCA1	97	83.093	Tupaia_belangeri
ENSXETG00000001526	smarca1	97	86.035	ENSTTRG00000006168	SMARCA1	98	86.143	Tursiops_truncatus
ENSXETG00000001526	smarca1	99	89.045	ENSUAMG00000020201	SMARCA1	94	89.045	Ursus_americanus
ENSXETG00000001526	smarca1	98	85.729	ENSUMAG00000004073	SMARCA1	96	90.732	Ursus_maritimus
ENSXETG00000001526	smarca1	77	90.821	ENSVPAG00000010492	-	77	90.821	Vicugna_pacos
ENSXETG00000001526	smarca1	99	89.548	ENSVVUG00000008878	SMARCA1	98	90.977	Vulpes_vulpes
ENSXETG00000001526	smarca1	98	84.254	ENSXCOG00000011170	smarca5	97	83.927	Xiphophorus_couchianus
ENSXETG00000001526	smarca1	98	84.254	ENSXMAG00000009678	smarca5	98	84.816	Xiphophorus_maculatus