EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXETG00000001783 (Gene tree)
Gene ID: -
Gene Symbol: stau1
Alias: -
Full Name: Xenopus tropicalis staufen double-stranded RNA binding protein 1 (stau1)%2C transcript variant 2%2C mRNA.
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Plus strand
Length: 22021 bases
Position: chrGL172684.1:2884532-2906552
Accession: NM_001244907
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000003708	dsrm	PF00035.26	4.5e-46	1	3
ENSXETP00000003708	dsrm	PF00035.26	4.5e-46	2	3
ENSXETP00000003708	dsrm	PF00035.26	4.5e-46	3	3
ENSXETP00000003706	dsrm	PF00035.26	1.8e-43	1	3
ENSXETP00000003706	dsrm	PF00035.26	1.8e-43	2	3
ENSXETP00000003706	dsrm	PF00035.26	1.8e-43	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000003706	-	3388	XM_012971772	ENSXETP00000003706	719 (aa)	XP_012827226	F6XG62
ENSXETT00000003708	-	3319	-	ENSXETP00000003708	696 (aa)	-	F6XG32

Gene Model

Click here to download ENSXETG00000001783's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000001783's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXETG00000001783	stau1	90	48.694	ENSXETG00000011826	stau2	99	44.423

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000001783	stau1	96	82.643	ENSG00000124214	STAU1	99	82.446	Homo_sapiens
ENSXETG00000001783	stau1	96	70.815	ENSAPOG00000017260	stau1	96	71.217	Acanthochromis_polyacanthus
ENSXETG00000001783	stau1	100	78.490	ENSAMEG00000013681	STAU1	100	78.348	Ailuropoda_melanoleuca
ENSXETG00000001783	stau1	96	71.257	ENSACIG00000015918	stau1	96	72.048	Amphilophus_citrinellus
ENSXETG00000001783	stau1	96	72.107	ENSAOCG00000012224	stau1	96	72.404	Amphiprion_ocellaris
ENSXETG00000001783	stau1	96	72.107	ENSAPEG00000012308	stau1	96	72.404	Amphiprion_percula
ENSXETG00000001783	stau1	96	71.746	ENSATEG00000024600	stau1	96	72.643	Anabas_testudineus
ENSXETG00000001783	stau1	99	83.240	ENSAPLG00000010527	STAU1	100	83.380	Anas_platyrhynchos
ENSXETG00000001783	stau1	100	84.943	ENSACAG00000015909	STAU1	100	85.227	Anolis_carolinensis
ENSXETG00000001783	stau1	96	81.287	ENSANAG00000032714	STAU1	99	81.092	Aotus_nancymaae
ENSXETG00000001783	stau1	96	71.111	ENSACLG00000012270	stau1	97	71.259	Astatotilapia_calliptera
ENSXETG00000001783	stau1	73	73.633	ENSAMXG00000016812	stau1	88	73.438	Astyanax_mexicanus
ENSXETG00000001783	stau1	96	81.657	ENSBTAG00000000241	STAU1	99	81.460	Bos_taurus
ENSXETG00000001783	stau1	96	82.249	ENSCJAG00000016233	STAU1	99	82.051	Callithrix_jacchus
ENSXETG00000001783	stau1	96	80.207	ENSCAFG00000011347	STAU1	98	82.051	Canis_familiaris
ENSXETG00000001783	stau1	96	80.207	ENSCAFG00020017123	STAU1	99	81.291	Canis_lupus_dingo
ENSXETG00000001783	stau1	96	81.460	ENSCHIG00000001799	-	99	81.262	Capra_hircus
ENSXETG00000001783	stau1	96	79.882	ENSTSYG00000036179	-	99	79.684	Carlito_syrichta
ENSXETG00000001783	stau1	71	78.340	ENSCAPG00000017041	STAU1	99	78.138	Cavia_aperea
ENSXETG00000001783	stau1	70	77.439	ENSCPOG00000005566	STAU1	99	77.236	Cavia_porcellus
ENSXETG00000001783	stau1	96	81.481	ENSCCAG00000034339	STAU1	99	81.287	Cebus_capucinus
ENSXETG00000001783	stau1	96	82.646	ENSCATG00000028474	STAU1	99	82.430	Cercocebus_atys
ENSXETG00000001783	stau1	70	66.126	ENSCLAG00000002784	-	99	65.720	Chinchilla_lanigera
ENSXETG00000001783	stau1	70	80.691	ENSCLAG00000006516	-	99	80.488	Chinchilla_lanigera
ENSXETG00000001783	stau1	71	82.186	ENSCSAG00000014986	STAU1	99	81.984	Chlorocebus_sabaeus
ENSXETG00000001783	stau1	96	83.268	ENSCHOG00000001511	STAU1	99	82.087	Choloepus_hoffmanni
ENSXETG00000001783	stau1	99	86.000	ENSCPBG00000026741	STAU1	100	86.286	Chrysemys_picta_bellii
ENSXETG00000001783	stau1	96	82.249	ENSCANG00000039220	STAU1	99	82.051	Colobus_angolensis_palliatus
ENSXETG00000001783	stau1	70	76.423	ENSCGRG00001013453	Stau1	99	76.220	Cricetulus_griseus_chok1gshd
ENSXETG00000001783	stau1	70	76.423	ENSCGRG00000007216	Stau1	99	76.220	Cricetulus_griseus_crigri
ENSXETG00000001783	stau1	96	63.636	ENSCSEG00000000792	stau1	96	64.714	Cynoglossus_semilaevis
ENSXETG00000001783	stau1	72	69.625	ENSCVAG00000005906	stau1	89	70.472	Cyprinodon_variegatus
ENSXETG00000001783	stau1	96	71.852	ENSDARG00000044182	stau1	100	72.457	Danio_rerio
ENSXETG00000001783	stau1	96	82.874	ENSDNOG00000014933	STAU1	98	81.693	Dasypus_novemcinctus
ENSXETG00000001783	stau1	70	77.778	ENSDORG00000030220	Stau1	99	77.572	Dipodomys_ordii
ENSXETG00000001783	stau1	81	80.066	ENSETEG00000018235	STAU1	87	79.402	Echinops_telfairi
ENSXETG00000001783	stau1	96	81.871	ENSEASG00005023343	STAU1	100	80.981	Equus_asinus_asinus
ENSXETG00000001783	stau1	96	83.037	ENSECAG00000012894	STAU1	99	82.840	Equus_caballus
ENSXETG00000001783	stau1	71	83.715	ENSEEUG00000014344	STAU1	80	83.461	Erinaceus_europaeus
ENSXETG00000001783	stau1	95	70.692	ENSELUG00000002529	stau1	99	71.295	Esox_lucius
ENSXETG00000001783	stau1	96	80.502	ENSFCAG00000001447	STAU1	99	82.249	Felis_catus
ENSXETG00000001783	stau1	99	84.150	ENSFALG00000012940	STAU1	100	84.870	Ficedula_albicollis
ENSXETG00000001783	stau1	70	80.285	ENSFDAG00000014119	-	99	80.081	Fukomys_damarensis
ENSXETG00000001783	stau1	71	62.173	ENSFDAG00000020837	-	99	62.651	Fukomys_damarensis
ENSXETG00000001783	stau1	96	71.154	ENSFHEG00000013517	stau1	97	71.450	Fundulus_heteroclitus
ENSXETG00000001783	stau1	99	61.485	ENSGMOG00000016850	stau1	99	61.765	Gadus_morhua
ENSXETG00000001783	stau1	99	85.879	ENSGALG00000004736	STAU1	100	86.023	Gallus_gallus
ENSXETG00000001783	stau1	96	71.302	ENSGAFG00000010437	stau1	99	70.360	Gambusia_affinis
ENSXETG00000001783	stau1	96	70.920	ENSGACG00000001352	stau1	97	70.920	Gasterosteus_aculeatus
ENSXETG00000001783	stau1	99	86.455	ENSGAGG00000009825	STAU1	100	86.744	Gopherus_agassizii
ENSXETG00000001783	stau1	96	77.864	ENSGGOG00000025351	STAU1	99	84.022	Gorilla_gorilla
ENSXETG00000001783	stau1	96	71.259	ENSHBUG00000023668	stau1	97	71.407	Haplochromis_burtoni
ENSXETG00000001783	stau1	70	81.481	ENSHGLG00000008730	STAU1	99	81.276	Heterocephalus_glaber_female
ENSXETG00000001783	stau1	70	81.481	ENSHGLG00100000098	STAU1	99	81.276	Heterocephalus_glaber_male
ENSXETG00000001783	stau1	95	67.515	ENSHCOG00000018461	stau1	96	67.814	Hippocampus_comes
ENSXETG00000001783	stau1	96	70.833	ENSIPUG00000023725	stau1	97	70.982	Ictalurus_punctatus
ENSXETG00000001783	stau1	70	80.658	ENSSTOG00000003634	STAU1	99	80.453	Ictidomys_tridecemlineatus
ENSXETG00000001783	stau1	70	79.424	ENSJJAG00000020032	Stau1	99	79.218	Jaculus_jaculus
ENSXETG00000001783	stau1	96	69.733	ENSKMAG00000007135	stau1	97	70.519	Kryptolebias_marmoratus
ENSXETG00000001783	stau1	96	70.963	ENSLBEG00000020172	stau1	96	70.772	Labrus_bergylta
ENSXETG00000001783	stau1	98	79.971	ENSLACG00000016157	STAU1	99	78.039	Latimeria_chalumnae
ENSXETG00000001783	stau1	99	75.680	ENSLOCG00000003134	stau1	100	75.966	Lepisosteus_oculatus
ENSXETG00000001783	stau1	73	82.446	ENSLAFG00000003238	STAU1	99	82.249	Loxodonta_africana
ENSXETG00000001783	stau1	96	82.646	ENSMFAG00000040931	STAU1	99	83.333	Macaca_fascicularis
ENSXETG00000001783	stau1	96	77.864	ENSMMUG00000002302	STAU1	99	83.333	Macaca_mulatta
ENSXETG00000001783	stau1	96	82.446	ENSMNEG00000033821	STAU1	99	82.249	Macaca_nemestrina
ENSXETG00000001783	stau1	96	82.249	ENSMLEG00000031383	STAU1	99	82.051	Mandrillus_leucophaeus
ENSXETG00000001783	stau1	96	72.000	ENSMAMG00000017586	stau1	96	72.755	Mastacembelus_armatus
ENSXETG00000001783	stau1	96	71.217	ENSMZEG00005015605	stau1	97	71.365	Maylandia_zebra
ENSXETG00000001783	stau1	99	83.101	ENSMGAG00000004719	STAU1	100	83.240	Meleagris_gallopavo
ENSXETG00000001783	stau1	70	76.423	ENSMAUG00000013846	Stau1	99	76.220	Mesocricetus_auratus
ENSXETG00000001783	stau1	96	80.702	ENSMICG00000001995	STAU1	99	80.507	Microcebus_murinus
ENSXETG00000001783	stau1	70	77.413	ENSMOCG00000018743	Stau1	99	76.829	Microtus_ochrogaster
ENSXETG00000001783	stau1	96	68.343	ENSMMOG00000015455	stau1	99	70.707	Mola_mola
ENSXETG00000001783	stau1	96	85.180	ENSMODG00000016276	STAU1	99	85.030	Monodelphis_domestica
ENSXETG00000001783	stau1	96	71.958	ENSMALG00000000045	stau1	99	70.513	Monopterus_albus
ENSXETG00000001783	stau1	70	77.778	MGP_CAROLIEiJ_G0024699	Stau1	99	77.572	Mus_caroli
ENSXETG00000001783	stau1	70	77.572	ENSMUSG00000039536	Stau1	99	77.366	Mus_musculus
ENSXETG00000001783	stau1	70	76.955	MGP_PahariEiJ_G0026141	Stau1	99	76.749	Mus_pahari
ENSXETG00000001783	stau1	70	77.572	MGP_SPRETEiJ_G0025619	Stau1	99	77.366	Mus_spretus
ENSXETG00000001783	stau1	96	80.684	ENSMPUG00000017581	STAU1	100	80.535	Mustela_putorius_furo
ENSXETG00000001783	stau1	96	78.195	ENSMLUG00000008407	STAU1	98	81.262	Myotis_lucifugus
ENSXETG00000001783	stau1	70	79.268	ENSNGAG00000007108	Stau1	99	79.065	Nannospalax_galili
ENSXETG00000001783	stau1	96	71.259	ENSNBRG00000017596	stau1	97	71.407	Neolamprologus_brichardi
ENSXETG00000001783	stau1	96	82.051	ENSNLEG00000006955	STAU1	99	81.854	Nomascus_leucogenys
ENSXETG00000001783	stau1	75	86.522	ENSMEUG00000003263	STAU1	91	86.304	Notamacropus_eugenii
ENSXETG00000001783	stau1	95	78.698	ENSOPRG00000014569	STAU1	89	78.501	Ochotona_princeps
ENSXETG00000001783	stau1	71	80.972	ENSODEG00000006523	STAU1	99	80.769	Octodon_degus
ENSXETG00000001783	stau1	96	69.385	ENSONIG00000004152	stau1	96	69.528	Oreochromis_niloticus
ENSXETG00000001783	stau1	99	83.073	ENSOANG00000006394	STAU1	100	83.357	Ornithorhynchus_anatinus
ENSXETG00000001783	stau1	96	80.079	ENSOCUG00000006214	STAU1	99	79.882	Oryctolagus_cuniculus
ENSXETG00000001783	stau1	96	69.527	ENSOMEG00000002388	stau1	97	69.822	Oryzias_melastigma
ENSXETG00000001783	stau1	96	81.657	ENSOGAG00000002127	STAU1	98	81.460	Otolemur_garnettii
ENSXETG00000001783	stau1	70	55.263	ENSOGAG00000028222	-	98	54.158	Otolemur_garnettii
ENSXETG00000001783	stau1	96	81.460	ENSOARG00000012204	STAU1	99	80.597	Ovis_aries
ENSXETG00000001783	stau1	96	77.864	ENSPPAG00000032023	STAU1	99	84.022	Pan_paniscus
ENSXETG00000001783	stau1	96	79.323	ENSPPRG00000003436	STAU1	99	82.249	Panthera_pardus
ENSXETG00000001783	stau1	96	79.323	ENSPTIG00000011768	STAU1	99	82.249	Panthera_tigris_altaica
ENSXETG00000001783	stau1	96	77.864	ENSPTRG00000023130	STAU1	99	84.022	Pan_troglodytes
ENSXETG00000001783	stau1	96	82.646	ENSPANG00000020560	STAU1	99	82.430	Papio_anubis
ENSXETG00000001783	stau1	99	71.795	ENSPKIG00000024588	stau1	99	71.795	Paramormyrops_kingsleyae
ENSXETG00000001783	stau1	100	85.960	ENSPSIG00000010731	STAU1	100	86.246	Pelodiscus_sinensis
ENSXETG00000001783	stau1	95	71.493	ENSPMGG00000018553	stau1	99	71.111	Periophthalmus_magnuspinnatus
ENSXETG00000001783	stau1	70	76.829	ENSPEMG00000022045	Stau1	99	76.626	Peromyscus_maniculatus_bairdii
ENSXETG00000001783	stau1	96	85.185	ENSPCIG00000023269	STAU1	99	84.990	Phascolarctos_cinereus
ENSXETG00000001783	stau1	96	70.858	ENSPFOG00000017253	stau1	97	71.154	Poecilia_formosa
ENSXETG00000001783	stau1	57	71.033	ENSPLAG00000014829	stau1	96	66.057	Poecilia_latipinna
ENSXETG00000001783	stau1	96	67.604	ENSPMEG00000007495	stau1	96	67.899	Poecilia_mexicana
ENSXETG00000001783	stau1	96	71.006	ENSPREG00000003477	stau1	97	70.858	Poecilia_reticulata
ENSXETG00000001783	stau1	96	81.854	ENSPPYG00000011111	STAU1	99	81.657	Pongo_abelii
ENSXETG00000001783	stau1	87	74.214	ENSPCAG00000002459	STAU1	100	73.795	Procavia_capensis
ENSXETG00000001783	stau1	96	81.460	ENSPCOG00000027746	STAU1	99	81.262	Propithecus_coquereli
ENSXETG00000001783	stau1	80	83.946	ENSPVAG00000015019	STAU1	86	83.278	Pteropus_vampyrus
ENSXETG00000001783	stau1	96	71.259	ENSPNYG00000014436	stau1	97	71.407	Pundamilia_nyererei
ENSXETG00000001783	stau1	95	70.387	ENSPNAG00000011323	stau1	99	69.559	Pygocentrus_nattereri
ENSXETG00000001783	stau1	70	76.423	ENSRNOG00000007781	Stau1	99	76.220	Rattus_norvegicus
ENSXETG00000001783	stau1	71	81.690	ENSRBIG00000037345	STAU1	99	81.000	Rhinopithecus_bieti
ENSXETG00000001783	stau1	96	82.446	ENSRROG00000039008	STAU1	99	82.249	Rhinopithecus_roxellana
ENSXETG00000001783	stau1	96	81.481	ENSSBOG00000034448	STAU1	99	81.287	Saimiri_boliviensis_boliviensis
ENSXETG00000001783	stau1	96	85.030	ENSSHAG00000009492	STAU1	98	85.996	Sarcophilus_harrisii
ENSXETG00000001783	stau1	99	71.879	ENSSFOG00015021497	stau1	99	72.310	Scleropages_formosus
ENSXETG00000001783	stau1	96	71.111	ENSSMAG00000017410	stau1	96	71.513	Scophthalmus_maximus
ENSXETG00000001783	stau1	96	71.810	ENSSDUG00000019439	stau1	96	71.958	Seriola_dumerili
ENSXETG00000001783	stau1	96	71.704	ENSSLDG00000025040	stau1	96	71.958	Seriola_lalandi_dorsalis
ENSXETG00000001783	stau1	56	81.423	ENSSARG00000010389	-	63	80.632	Sorex_araneus
ENSXETG00000001783	stau1	99	84.758	ENSSPUG00000017983	STAU1	100	85.043	Sphenodon_punctatus
ENSXETG00000001783	stau1	96	71.704	ENSSPAG00000019275	stau1	96	71.958	Stegastes_partitus
ENSXETG00000001783	stau1	96	82.840	ENSSSCG00000027444	STAU1	99	82.915	Sus_scrofa
ENSXETG00000001783	stau1	99	81.476	ENSTGUG00000008784	STAU1	100	81.755	Taeniopygia_guttata
ENSXETG00000001783	stau1	96	70.299	ENSTRUG00000005837	stau1	96	71.194	Takifugu_rubripes
ENSXETG00000001783	stau1	96	69.527	ENSTNIG00000014732	stau1	99	69.822	Tetraodon_nigroviridis
ENSXETG00000001783	stau1	95	68.045	ENSTBEG00000009404	STAU1	99	70.611	Tupaia_belangeri
ENSXETG00000001783	stau1	75	80.000	ENSTTRG00000004285	STAU1	91	79.783	Tursiops_truncatus
ENSXETG00000001783	stau1	71	81.038	ENSUAMG00000025449	STAU1	99	80.838	Ursus_americanus
ENSXETG00000001783	stau1	53	79.101	ENSUMAG00000024475	STAU1	89	78.836	Ursus_maritimus
ENSXETG00000001783	stau1	96	82.840	ENSVPAG00000001313	STAU1	99	82.643	Vicugna_pacos
ENSXETG00000001783	stau1	96	80.355	ENSVVUG00000022325	STAU1	99	80.207	Vulpes_vulpes
ENSXETG00000001783	stau1	53	71.892	ENSXCOG00000008804	stau1	94	69.892	Xiphophorus_couchianus
ENSXETG00000001783	stau1	95	70.746	ENSXMAG00000016175	stau1	96	71.045	Xiphophorus_maculatus