EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXETG00000001952 (Gene tree)
Gene ID: -
Gene Symbol: polr1a
Alias: -
Full Name: polymerase (RNA) I polypeptide A
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Plus strand
Length: 46713 bases
Position: chrGL172916.1:671014-717726
Accession: XB-GENE-1005160
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000004175	RNA_pol_Rpb1_5	PF04998.17	1.1e-96	1	1
ENSXETP00000024087	RNA_pol_Rpb1_5	PF04998.17	1.8e-66	1	1
ENSXETP00000024087	RNA_pol_Rpb1_4	PF05000.17	2.8e-09	1	1
ENSXETP00000004175	RNA_pol_Rpb1_4	PF05000.17	2.1e-08	1	1
ENSXETP00000024087	RNA_pol_Rpb1_2	PF00623.20	1.2e-70	1	1
ENSXETP00000004175	RNA_pol_Rpb1_2	PF00623.20	1.6e-70	1	1
ENSXETP00000024087	RNA_pol_Rpb1_3	PF04983.18	1.1e-36	1	1
ENSXETP00000004175	RNA_pol_Rpb1_3	PF04983.18	1.3e-36	1	1
ENSXETP00000024087	RNA_pol_Rpb1_1	PF04997.12	6.1e-26	1	1
ENSXETP00000004175	RNA_pol_Rpb1_1	PF04997.12	9.4e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000024087	-	4275	-	ENSXETP00000024087	1425 (aa)	-	F6TJA0
ENSXETT00000004175	-	5148	-	ENSXETP00000004175	1715 (aa)	-	F6RJ55

Gene Model

Click here to download ENSXETG00000001952's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000001952's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXETG00000001952	polr1a	71	32.193	ENSXETG00000018101	polr3a	74	32.814
ENSXETG00000001952	polr1a	63	43.243	ENSXETG00000012465	polr2a	52	50.588

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000001952	polr1a	100	69.468	ENSG00000068654	POLR1A	100	67.326	Homo_sapiens
ENSXETG00000001952	polr1a	83	64.603	ENSAPOG00000017945	polr1a	99	64.686	Acanthochromis_polyacanthus
ENSXETG00000001952	polr1a	100	69.811	ENSAMEG00000005807	POLR1A	100	71.371	Ailuropoda_melanoleuca
ENSXETG00000001952	polr1a	97	65.593	ENSACIG00000022147	polr1a	100	63.889	Amphilophus_citrinellus
ENSXETG00000001952	polr1a	99	64.221	ENSAOCG00000017336	polr1a	100	65.202	Amphiprion_ocellaris
ENSXETG00000001952	polr1a	94	70.345	ENSAPEG00000016105	polr1a	98	70.345	Amphiprion_percula
ENSXETG00000001952	polr1a	99	64.410	ENSATEG00000016773	polr1a	100	63.536	Anabas_testudineus
ENSXETG00000001952	polr1a	85	68.400	ENSAPLG00000013871	POLR1A	99	68.268	Anas_platyrhynchos
ENSXETG00000001952	polr1a	99	64.380	ENSACAG00000012141	POLR1A	99	64.183	Anolis_carolinensis
ENSXETG00000001952	polr1a	100	68.978	ENSANAG00000033927	POLR1A	100	67.824	Aotus_nancymaae
ENSXETG00000001952	polr1a	100	60.475	ENSACLG00000020541	polr1a	100	60.313	Astatotilapia_calliptera
ENSXETG00000001952	polr1a	100	69.489	ENSBTAG00000006481	POLR1A	100	67.684	Bos_taurus
ENSXETG00000001952	polr1a	99	36.659	WBGene00012999	rpoa-1	77	59.783	Caenorhabditis_elegans
ENSXETG00000001952	polr1a	100	68.768	ENSCJAG00000019547	POLR1A	100	67.611	Callithrix_jacchus
ENSXETG00000001952	polr1a	100	69.811	ENSCAFG00000007613	POLR1A	100	68.454	Canis_familiaris
ENSXETG00000001952	polr1a	100	69.629	ENSCAFG00020014752	POLR1A	100	68.303	Canis_lupus_dingo
ENSXETG00000001952	polr1a	100	69.678	ENSCHIG00000018204	POLR1A	100	67.321	Capra_hircus
ENSXETG00000001952	polr1a	100	68.601	ENSTSYG00000002761	POLR1A	100	67.940	Carlito_syrichta
ENSXETG00000001952	polr1a	97	63.712	ENSCAPG00000010132	POLR1A	100	63.653	Cavia_aperea
ENSXETG00000001952	polr1a	100	67.690	ENSCPOG00000012350	POLR1A	100	67.591	Cavia_porcellus
ENSXETG00000001952	polr1a	100	69.328	ENSCCAG00000019839	POLR1A	100	68.190	Cebus_capucinus
ENSXETG00000001952	polr1a	100	69.398	ENSCATG00000029786	POLR1A	100	67.843	Cercocebus_atys
ENSXETG00000001952	polr1a	99	68.934	ENSCLAG00000005187	POLR1A	100	67.707	Chinchilla_lanigera
ENSXETG00000001952	polr1a	100	69.188	ENSCSAG00000016251	POLR1A	100	67.727	Chlorocebus_sabaeus
ENSXETG00000001952	polr1a	58	87.940	ENSCHOG00000003766	-	84	87.940	Choloepus_hoffmanni
ENSXETG00000001952	polr1a	99	70.084	ENSCPBG00000001115	POLR1A	99	68.823	Chrysemys_picta_bellii
ENSXETG00000001952	polr1a	99	44.945	ENSCSAVG00000007184	-	92	51.526	Ciona_savignyi
ENSXETG00000001952	polr1a	100	66.480	ENSCANG00000031785	POLR1A	100	65.434	Colobus_angolensis_palliatus
ENSXETG00000001952	polr1a	100	64.061	ENSCGRG00001006651	Polr1a	100	63.715	Cricetulus_griseus_chok1gshd
ENSXETG00000001952	polr1a	60	65.005	ENSCGRG00000010834	Polr1a	100	65.388	Cricetulus_griseus_crigri
ENSXETG00000001952	polr1a	100	58.641	ENSCSEG00000020190	polr1a	100	58.492	Cynoglossus_semilaevis
ENSXETG00000001952	polr1a	99	62.937	ENSCVAG00000020941	polr1a	100	60.977	Cyprinodon_variegatus
ENSXETG00000001952	polr1a	100	65.229	ENSDARG00000098375	polr1a	100	64.315	Danio_rerio
ENSXETG00000001952	polr1a	100	67.600	ENSDNOG00000010829	POLR1A	100	64.991	Dasypus_novemcinctus
ENSXETG00000001952	polr1a	100	68.502	ENSDORG00000008298	Polr1a	100	67.686	Dipodomys_ordii
ENSXETG00000001952	polr1a	95	42.198	FBgn0019938	RpI1	99	40.583	Drosophila_melanogaster
ENSXETG00000001952	polr1a	71	100.000	ENSETEG00000000412	-	66	100.000	Echinops_telfairi
ENSXETG00000001952	polr1a	89	44.990	ENSEBUG00000005667	-	99	45.032	Eptatretus_burgeri
ENSXETG00000001952	polr1a	100	69.790	ENSEASG00005001625	POLR1A	100	68.099	Equus_asinus_asinus
ENSXETG00000001952	polr1a	100	69.790	ENSECAG00000030510	-	99	72.718	Equus_caballus
ENSXETG00000001952	polr1a	100	69.790	ENSECAG00000036306	-	99	72.718	Equus_caballus
ENSXETG00000001952	polr1a	100	69.790	ENSECAG00000010092	POLR1A	99	72.718	Equus_caballus
ENSXETG00000001952	polr1a	81	79.787	ENSEEUG00000000676	POLR1A	84	79.787	Erinaceus_europaeus
ENSXETG00000001952	polr1a	100	64.595	ENSELUG00000012769	polr1a	99	63.699	Esox_lucius
ENSXETG00000001952	polr1a	100	69.714	ENSFCAG00000008966	POLR1A	100	68.203	Felis_catus
ENSXETG00000001952	polr1a	99	68.111	ENSFALG00000010082	POLR1A	99	66.784	Ficedula_albicollis
ENSXETG00000001952	polr1a	100	68.838	ENSFDAG00000013726	POLR1A	100	67.731	Fukomys_damarensis
ENSXETG00000001952	polr1a	100	60.151	ENSFHEG00000005996	polr1a	100	59.896	Fundulus_heteroclitus
ENSXETG00000001952	polr1a	100	57.555	ENSGMOG00000002230	polr1a	100	58.246	Gadus_morhua
ENSXETG00000001952	polr1a	99	67.697	ENSGALG00000038160	-	99	65.307	Gallus_gallus
ENSXETG00000001952	polr1a	99	62.630	ENSGAFG00000015266	polr1a	100	61.663	Gambusia_affinis
ENSXETG00000001952	polr1a	99	62.875	ENSGACG00000018791	polr1a	100	61.329	Gasterosteus_aculeatus
ENSXETG00000001952	polr1a	87	70.513	ENSGAGG00000004984	-	99	68.896	Gopherus_agassizii
ENSXETG00000001952	polr1a	100	69.538	ENSGGOG00000001788	POLR1A	100	67.296	Gorilla_gorilla
ENSXETG00000001952	polr1a	90	62.470	ENSHBUG00000020021	polr1a	99	62.083	Haplochromis_burtoni
ENSXETG00000001952	polr1a	100	68.908	ENSHGLG00000006334	POLR1A	100	67.281	Heterocephalus_glaber_female
ENSXETG00000001952	polr1a	100	68.667	ENSHGLG00100006614	POLR1A	100	67.088	Heterocephalus_glaber_male
ENSXETG00000001952	polr1a	100	60.336	ENSHCOG00000003345	polr1a	100	59.632	Hippocampus_comes
ENSXETG00000001952	polr1a	99	65.095	ENSIPUG00000013174	polr1a	100	63.537	Ictalurus_punctatus
ENSXETG00000001952	polr1a	99	69.776	ENSSTOG00000012580	POLR1A	99	68.232	Ictidomys_tridecemlineatus
ENSXETG00000001952	polr1a	100	69.204	ENSJJAG00000013113	Polr1a	100	67.855	Jaculus_jaculus
ENSXETG00000001952	polr1a	100	62.209	ENSKMAG00000007399	polr1a	100	61.721	Kryptolebias_marmoratus
ENSXETG00000001952	polr1a	93	66.843	ENSLBEG00000015401	polr1a	96	68.966	Labrus_bergylta
ENSXETG00000001952	polr1a	64	74.891	ENSLACG00000003218	polr1a	100	74.809	Latimeria_chalumnae
ENSXETG00000001952	polr1a	100	68.226	ENSLOCG00000010881	polr1a	100	67.149	Lepisosteus_oculatus
ENSXETG00000001952	polr1a	100	69.129	ENSLAFG00000014948	POLR1A	100	67.859	Loxodonta_africana
ENSXETG00000001952	polr1a	100	69.328	ENSMFAG00000046097	POLR1A	100	67.919	Macaca_fascicularis
ENSXETG00000001952	polr1a	100	69.258	ENSMMUG00000015815	POLR1A	100	67.861	Macaca_mulatta
ENSXETG00000001952	polr1a	100	69.328	ENSMNEG00000043313	POLR1A	100	67.919	Macaca_nemestrina
ENSXETG00000001952	polr1a	100	68.627	ENSMLEG00000042428	POLR1A	100	67.206	Mandrillus_leucophaeus
ENSXETG00000001952	polr1a	99	64.186	ENSMAMG00000016565	polr1a	100	62.265	Mastacembelus_armatus
ENSXETG00000001952	polr1a	99	64.221	ENSMZEG00005004915	polr1a	100	62.731	Maylandia_zebra
ENSXETG00000001952	polr1a	99	67.577	ENSMGAG00000013111	POLR1A	99	64.928	Meleagris_gallopavo
ENSXETG00000001952	polr1a	92	68.501	ENSMAUG00000008497	Polr1a	100	68.501	Mesocricetus_auratus
ENSXETG00000001952	polr1a	100	69.274	ENSMICG00000000757	POLR1A	100	67.972	Microcebus_murinus
ENSXETG00000001952	polr1a	100	69.644	ENSMOCG00000000122	Polr1a	100	68.009	Microtus_ochrogaster
ENSXETG00000001952	polr1a	99	63.834	ENSMMOG00000010216	polr1a	100	61.891	Mola_mola
ENSXETG00000001952	polr1a	99	68.641	ENSMODG00000009335	POLR1A	100	64.527	Monodelphis_domestica
ENSXETG00000001952	polr1a	99	63.725	ENSMALG00000013363	polr1a	100	62.371	Monopterus_albus
ENSXETG00000001952	polr1a	100	68.903	MGP_CAROLIEiJ_G0028494	Polr1a	100	67.606	Mus_caroli
ENSXETG00000001952	polr1a	100	69.182	ENSMUSG00000049553	Polr1a	100	67.779	Mus_musculus
ENSXETG00000001952	polr1a	100	69.016	MGP_PahariEiJ_G0022230	Polr1a	100	67.489	Mus_pahari
ENSXETG00000001952	polr1a	100	69.182	MGP_SPRETEiJ_G0029499	Polr1a	100	67.749	Mus_spretus
ENSXETG00000001952	polr1a	100	69.790	ENSMPUG00000009135	POLR1A	100	68.595	Mustela_putorius_furo
ENSXETG00000001952	polr1a	100	68.876	ENSMLUG00000015723	POLR1A	100	67.931	Myotis_lucifugus
ENSXETG00000001952	polr1a	100	69.553	ENSNGAG00000017907	Polr1a	100	67.738	Nannospalax_galili
ENSXETG00000001952	polr1a	99	64.151	ENSNBRG00000000519	polr1a	100	62.478	Neolamprologus_brichardi
ENSXETG00000001952	polr1a	100	69.306	ENSNLEG00000002264	POLR1A	100	66.513	Nomascus_leucogenys
ENSXETG00000001952	polr1a	81	83.680	ENSMEUG00000011665	-	75	83.680	Notamacropus_eugenii
ENSXETG00000001952	polr1a	100	64.435	ENSOPRG00000008269	POLR1A	100	64.265	Ochotona_princeps
ENSXETG00000001952	polr1a	100	67.979	ENSODEG00000003542	POLR1A	100	67.979	Octodon_degus
ENSXETG00000001952	polr1a	99	64.829	ENSONIG00000015895	polr1a	100	63.042	Oreochromis_niloticus
ENSXETG00000001952	polr1a	50	65.663	ENSOANG00000012384	-	99	65.984	Ornithorhynchus_anatinus
ENSXETG00000001952	polr1a	100	70.098	ENSOCUG00000010138	POLR1A	100	68.561	Oryctolagus_cuniculus
ENSXETG00000001952	polr1a	99	62.544	ENSORLG00000008753	polr1a	99	61.327	Oryzias_latipes
ENSXETG00000001952	polr1a	99	61.227	ENSORLG00020020726	polr1a	99	60.218	Oryzias_latipes_hni
ENSXETG00000001952	polr1a	94	78.723	ENSORLG00015016071	polr1a	98	78.723	Oryzias_latipes_hsok
ENSXETG00000001952	polr1a	100	69.161	ENSOGAG00000004031	POLR1A	100	67.395	Otolemur_garnettii
ENSXETG00000001952	polr1a	100	69.441	ENSOARG00000020601	POLR1A	100	68.166	Ovis_aries
ENSXETG00000001952	polr1a	100	69.328	ENSPPAG00000042450	POLR1A	100	67.013	Pan_paniscus
ENSXETG00000001952	polr1a	100	69.714	ENSPPRG00000006702	POLR1A	100	68.379	Panthera_pardus
ENSXETG00000001952	polr1a	100	69.284	ENSPTIG00000018783	POLR1A	100	68.028	Panthera_tigris_altaica
ENSXETG00000001952	polr1a	100	69.258	ENSPTRG00000012147	POLR1A	100	67.010	Pan_troglodytes
ENSXETG00000001952	polr1a	100	69.258	ENSPANG00000025908	POLR1A	100	67.727	Papio_anubis
ENSXETG00000001952	polr1a	94	71.724	ENSPKIG00000005468	polr1a	99	71.724	Paramormyrops_kingsleyae
ENSXETG00000001952	polr1a	63	65.746	ENSPSIG00000009321	-	99	66.083	Pelodiscus_sinensis
ENSXETG00000001952	polr1a	64	66.013	ENSPMGG00000009718	polr1a	93	65.517	Periophthalmus_magnuspinnatus
ENSXETG00000001952	polr1a	100	69.638	ENSPEMG00000022224	Polr1a	100	68.333	Peromyscus_maniculatus_bairdii
ENSXETG00000001952	polr1a	99	69.756	ENSPCIG00000004222	POLR1A	99	67.927	Phascolarctos_cinereus
ENSXETG00000001952	polr1a	99	63.452	ENSPFOG00000005025	polr1a	100	62.197	Poecilia_formosa
ENSXETG00000001952	polr1a	99	63.503	ENSPLAG00000021389	polr1a	100	61.916	Poecilia_latipinna
ENSXETG00000001952	polr1a	99	61.158	ENSPMEG00000006463	polr1a	100	60.694	Poecilia_mexicana
ENSXETG00000001952	polr1a	99	63.573	ENSPREG00000002389	polr1a	100	61.760	Poecilia_reticulata
ENSXETG00000001952	polr1a	100	68.768	ENSPPYG00000012217	POLR1A	100	67.380	Pongo_abelii
ENSXETG00000001952	polr1a	91	68.934	ENSPCAG00000011582	POLR1A	91	68.721	Procavia_capensis
ENSXETG00000001952	polr1a	100	69.602	ENSPCOG00000026987	POLR1A	100	68.203	Propithecus_coquereli
ENSXETG00000001952	polr1a	94	68.738	ENSPVAG00000012674	POLR1A	95	66.570	Pteropus_vampyrus
ENSXETG00000001952	polr1a	99	64.221	ENSPNYG00000000026	polr1a	100	62.731	Pundamilia_nyererei
ENSXETG00000001952	polr1a	100	65.433	ENSPNAG00000019223	polr1a	99	66.003	Pygocentrus_nattereri
ENSXETG00000001952	polr1a	100	69.784	ENSRNOG00000009545	Polr1a	100	68.418	Rattus_norvegicus
ENSXETG00000001952	polr1a	100	69.328	ENSRBIG00000028335	POLR1A	100	67.901	Rhinopithecus_bieti
ENSXETG00000001952	polr1a	100	69.258	ENSRROG00000031473	POLR1A	100	67.843	Rhinopithecus_roxellana
ENSXETG00000001952	polr1a	99	36.230	YOR341W	RPA190	99	35.814	Saccharomyces_cerevisiae
ENSXETG00000001952	polr1a	100	69.048	ENSSBOG00000030262	POLR1A	100	68.132	Saimiri_boliviensis_boliviensis
ENSXETG00000001952	polr1a	100	64.135	ENSSHAG00000014739	POLR1A	100	64.790	Sarcophilus_harrisii
ENSXETG00000001952	polr1a	100	66.341	ENSSFOG00015019716	polr1a	100	64.890	Scleropages_formosus
ENSXETG00000001952	polr1a	99	63.447	ENSSMAG00000014342	polr1a	100	61.390	Scophthalmus_maximus
ENSXETG00000001952	polr1a	99	64.689	ENSSDUG00000014631	polr1a	100	62.443	Seriola_dumerili
ENSXETG00000001952	polr1a	95	67.333	ENSSLDG00000024095	polr1a	100	63.923	Seriola_lalandi_dorsalis
ENSXETG00000001952	polr1a	75	97.561	ENSSARG00000003136	-	71	97.561	Sorex_araneus
ENSXETG00000001952	polr1a	95	71.282	ENSSPUG00000004215	POLR1A	98	71.282	Sphenodon_punctatus
ENSXETG00000001952	polr1a	77	66.926	ENSSPAG00000016341	polr1a	95	67.713	Stegastes_partitus
ENSXETG00000001952	polr1a	100	69.559	ENSSSCG00000008226	POLR1A	99	69.371	Sus_scrofa
ENSXETG00000001952	polr1a	98	67.520	ENSTGUG00000010704	POLR1A	100	66.138	Taeniopygia_guttata
ENSXETG00000001952	polr1a	100	62.805	ENSTRUG00000002210	polr1a	99	60.757	Takifugu_rubripes
ENSXETG00000001952	polr1a	100	59.820	ENSTNIG00000010116	polr1a	100	56.963	Tetraodon_nigroviridis
ENSXETG00000001952	polr1a	74	86.283	ENSTBEG00000008646	POLR1A	74	86.283	Tupaia_belangeri
ENSXETG00000001952	polr1a	100	66.038	ENSTTRG00000008597	POLR1A	100	65.263	Tursiops_truncatus
ENSXETG00000001952	polr1a	69	68.913	ENSUAMG00000012158	-	94	68.913	Ursus_americanus
ENSXETG00000001952	polr1a	100	68.833	ENSUMAG00000006700	POLR1A	100	67.748	Ursus_maritimus
ENSXETG00000001952	polr1a	100	69.602	ENSVVUG00000001245	POLR1A	100	68.129	Vulpes_vulpes
ENSXETG00000001952	polr1a	99	63.110	ENSXMAG00000004032	polr1a	100	62.073	Xiphophorus_maculatus