EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXETG00000002654 (Gene tree)
Gene ID: -
Gene Symbol: lig4
Alias: -
Full Name: Xenopus tropicalis ligase IV%2C DNA%2C ATP-dependent (lig4)%2C mRNA.
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Plus strand
Length: 6240 bases
Position: chrGL172678.1:1936510-1942749
Accession: NM_001016981
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000005699	RNA_ligase	PF09414.10	2.8e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000005699	-	3124	-	ENSXETP00000005699	911 (aa)	-	F6SN56

Gene Model

Click here to download ENSXETG00000002654's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000002654's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000002654	lig4	99	73.238	ENSG00000174405	LIG4	100	73.934	Homo_sapiens
ENSXETG00000002654	lig4	100	67.873	ENSAPOG00000000866	lig4	100	67.873	Acanthochromis_polyacanthus
ENSXETG00000002654	lig4	99	70.210	ENSAMEG00000019685	LIG4	99	70.210	Ailuropoda_melanoleuca
ENSXETG00000002654	lig4	99	67.728	ENSACIG00000018309	lig4	99	67.728	Amphilophus_citrinellus
ENSXETG00000002654	lig4	100	67.544	ENSAOCG00000011768	lig4	100	67.544	Amphiprion_ocellaris
ENSXETG00000002654	lig4	100	67.654	ENSAPEG00000017815	lig4	100	67.654	Amphiprion_percula
ENSXETG00000002654	lig4	99	69.034	ENSATEG00000005583	lig4	99	69.034	Anabas_testudineus
ENSXETG00000002654	lig4	96	73.349	ENSAPLG00000001673	LIG4	99	73.432	Anas_platyrhynchos
ENSXETG00000002654	lig4	99	73.047	ENSACAG00000014566	LIG4	100	73.047	Anolis_carolinensis
ENSXETG00000002654	lig4	99	71.586	ENSANAG00000012446	LIG4	99	71.586	Aotus_nancymaae
ENSXETG00000002654	lig4	99	67.179	ENSACLG00000027051	lig4	99	67.179	Astatotilapia_calliptera
ENSXETG00000002654	lig4	100	65.577	ENSAMXG00000008192	lig4	95	65.577	Astyanax_mexicanus
ENSXETG00000002654	lig4	99	72.357	ENSBTAG00000015868	LIG4	99	72.357	Bos_taurus
ENSXETG00000002654	lig4	99	70.925	ENSCJAG00000014689	LIG4	99	70.925	Callithrix_jacchus
ENSXETG00000002654	lig4	100	71.070	ENSCAFG00000006031	LIG4	100	71.070	Canis_familiaris
ENSXETG00000002654	lig4	100	71.070	ENSCAFG00020021230	LIG4	100	71.070	Canis_lupus_dingo
ENSXETG00000002654	lig4	99	71.586	ENSCHIG00000001019	LIG4	99	71.586	Capra_hircus
ENSXETG00000002654	lig4	99	70.986	ENSCAPG00000006284	LIG4	99	70.986	Cavia_aperea
ENSXETG00000002654	lig4	99	70.595	ENSCPOG00000014266	LIG4	99	70.595	Cavia_porcellus
ENSXETG00000002654	lig4	99	72.026	ENSCCAG00000019971	LIG4	99	72.026	Cebus_capucinus
ENSXETG00000002654	lig4	99	72.357	ENSCATG00000021075	LIG4	99	72.357	Cercocebus_atys
ENSXETG00000002654	lig4	99	71.035	ENSCLAG00000003376	LIG4	99	71.035	Chinchilla_lanigera
ENSXETG00000002654	lig4	99	72.357	ENSCSAG00000000211	LIG4	99	72.357	Chlorocebus_sabaeus
ENSXETG00000002654	lig4	99	75.748	ENSCPBG00000023291	LIG4	100	75.383	Chrysemys_picta_bellii
ENSXETG00000002654	lig4	69	46.395	ENSCING00000009536	-	97	46.395	Ciona_intestinalis
ENSXETG00000002654	lig4	83	45.850	ENSCSAVG00000010336	-	98	45.850	Ciona_savignyi
ENSXETG00000002654	lig4	99	72.026	ENSCANG00000005805	LIG4	99	72.026	Colobus_angolensis_palliatus
ENSXETG00000002654	lig4	99	69.967	ENSCGRG00001012072	Lig4	99	69.967	Cricetulus_griseus_chok1gshd
ENSXETG00000002654	lig4	99	69.967	ENSCGRG00000013417	Lig4	99	69.967	Cricetulus_griseus_crigri
ENSXETG00000002654	lig4	98	66.741	ENSCSEG00000013905	lig4	97	66.741	Cynoglossus_semilaevis
ENSXETG00000002654	lig4	100	68.675	ENSCVAG00000007896	lig4	100	68.675	Cyprinodon_variegatus
ENSXETG00000002654	lig4	100	65.899	ENSDARG00000060620	lig4	100	65.899	Danio_rerio
ENSXETG00000002654	lig4	99	72.057	ENSDNOG00000000513	LIG4	99	72.057	Dasypus_novemcinctus
ENSXETG00000002654	lig4	99	71.571	ENSDORG00000027303	Lig4	99	71.571	Dipodomys_ordii
ENSXETG00000002654	lig4	84	32.214	FBgn0030506	Lig4	86	32.214	Drosophila_melanogaster
ENSXETG00000002654	lig4	98	68.182	ENSETEG00000015563	LIG4	100	68.514	Echinops_telfairi
ENSXETG00000002654	lig4	98	44.327	ENSEBUG00000014243	lig4	98	44.327	Eptatretus_burgeri
ENSXETG00000002654	lig4	99	72.026	ENSEASG00005022073	LIG4	99	72.026	Equus_asinus_asinus
ENSXETG00000002654	lig4	99	71.696	ENSECAG00000003257	LIG4	99	71.696	Equus_caballus
ENSXETG00000002654	lig4	98	67.481	ENSELUG00000006787	lig4	99	67.481	Esox_lucius
ENSXETG00000002654	lig4	99	71.018	ENSFCAG00000031985	LIG4	99	71.018	Felis_catus
ENSXETG00000002654	lig4	89	74.321	ENSFALG00000004214	LIG4	98	74.321	Ficedula_albicollis
ENSXETG00000002654	lig4	99	70.925	ENSFDAG00000008973	LIG4	99	70.925	Fukomys_damarensis
ENSXETG00000002654	lig4	99	68.000	ENSFHEG00000007398	lig4	89	68.000	Fundulus_heteroclitus
ENSXETG00000002654	lig4	85	65.429	ENSGMOG00000012843	lig4	99	65.429	Gadus_morhua
ENSXETG00000002654	lig4	100	72.727	ENSGALG00000016854	LIG4	100	72.727	Gallus_gallus
ENSXETG00000002654	lig4	99	67.544	ENSGAFG00000019779	lig4	96	67.544	Gambusia_affinis
ENSXETG00000002654	lig4	99	65.491	ENSGACG00000014135	lig4	99	65.491	Gasterosteus_aculeatus
ENSXETG00000002654	lig4	99	73.018	ENSGGOG00000027771	LIG4	99	73.018	Gorilla_gorilla
ENSXETG00000002654	lig4	99	66.959	ENSHBUG00000006245	lig4	99	66.959	Haplochromis_burtoni
ENSXETG00000002654	lig4	98	71.955	ENSHGLG00000000718	LIG4	98	71.955	Heterocephalus_glaber_female
ENSXETG00000002654	lig4	98	71.955	ENSHGLG00100003265	LIG4	98	71.955	Heterocephalus_glaber_male
ENSXETG00000002654	lig4	99	65.827	ENSHCOG00000012010	lig4	99	65.827	Hippocampus_comes
ENSXETG00000002654	lig4	100	66.265	ENSIPUG00000013748	lig4	100	66.265	Ictalurus_punctatus
ENSXETG00000002654	lig4	99	70.989	ENSSTOG00000024303	LIG4	99	70.989	Ictidomys_tridecemlineatus
ENSXETG00000002654	lig4	99	70.374	ENSJJAG00000006750	Lig4	99	70.374	Jaculus_jaculus
ENSXETG00000002654	lig4	100	66.228	ENSKMAG00000001149	lig4	100	66.228	Kryptolebias_marmoratus
ENSXETG00000002654	lig4	89	68.221	ENSLBEG00000014578	lig4	98	68.221	Labrus_bergylta
ENSXETG00000002654	lig4	100	71.021	ENSLACG00000003282	LIG4	100	71.021	Latimeria_chalumnae
ENSXETG00000002654	lig4	100	68.675	ENSLOCG00000008901	lig4	99	68.675	Lepisosteus_oculatus
ENSXETG00000002654	lig4	99	70.110	ENSLAFG00000031152	LIG4	99	70.110	Loxodonta_africana
ENSXETG00000002654	lig4	99	72.357	ENSMFAG00000037235	LIG4	99	72.357	Macaca_fascicularis
ENSXETG00000002654	lig4	99	72.357	ENSMMUG00000008874	LIG4	99	72.357	Macaca_mulatta
ENSXETG00000002654	lig4	99	72.357	ENSMNEG00000023575	LIG4	99	72.357	Macaca_nemestrina
ENSXETG00000002654	lig4	99	72.247	ENSMLEG00000026720	LIG4	99	72.247	Mandrillus_leucophaeus
ENSXETG00000002654	lig4	100	67.434	ENSMAMG00000008472	lig4	99	67.434	Mastacembelus_armatus
ENSXETG00000002654	lig4	99	67.179	ENSMZEG00005001855	lig4	99	67.179	Maylandia_zebra
ENSXETG00000002654	lig4	100	72.837	ENSMGAG00000015532	LIG4	100	72.837	Meleagris_gallopavo
ENSXETG00000002654	lig4	99	68.612	ENSMOCG00000019000	Lig4	99	68.612	Microtus_ochrogaster
ENSXETG00000002654	lig4	100	65.570	ENSMMOG00000004390	lig4	100	65.570	Mola_mola
ENSXETG00000002654	lig4	99	72.088	ENSMODG00000025064	LIG4	99	72.338	Monodelphis_domestica
ENSXETG00000002654	lig4	100	66.776	ENSMALG00000008555	lig4	100	66.776	Monopterus_albus
ENSXETG00000002654	lig4	99	70.220	MGP_CAROLIEiJ_G0030809	Lig4	99	70.220	Mus_caroli
ENSXETG00000002654	lig4	99	70.110	ENSMUSG00000049717	Lig4	99	70.110	Mus_musculus
ENSXETG00000002654	lig4	99	70.110	MGP_PahariEiJ_G0021270	Lig4	99	70.110	Mus_pahari
ENSXETG00000002654	lig4	99	70.000	MGP_SPRETEiJ_G0031917	Lig4	99	70.000	Mus_spretus
ENSXETG00000002654	lig4	99	70.264	ENSMPUG00000018675	LIG4	99	70.264	Mustela_putorius_furo
ENSXETG00000002654	lig4	99	71.586	ENSMLUG00000001267	LIG4	99	71.586	Myotis_lucifugus
ENSXETG00000002654	lig4	99	70.374	ENSNGAG00000013258	Lig4	99	70.374	Nannospalax_galili
ENSXETG00000002654	lig4	99	67.179	ENSNBRG00000021252	lig4	99	67.179	Neolamprologus_brichardi
ENSXETG00000002654	lig4	99	72.687	ENSNLEG00000007888	LIG4	99	72.687	Nomascus_leucogenys
ENSXETG00000002654	lig4	99	70.044	ENSOPRG00000005765	LIG4	99	70.044	Ochotona_princeps
ENSXETG00000002654	lig4	100	69.323	ENSODEG00000019683	LIG4	100	69.323	Octodon_degus
ENSXETG00000002654	lig4	99	66.813	ENSONIG00000011969	lig4	99	66.813	Oreochromis_niloticus
ENSXETG00000002654	lig4	99	70.485	ENSOCUG00000015734	LIG4	99	70.485	Oryctolagus_cuniculus
ENSXETG00000002654	lig4	99	66.375	ENSORLG00000004041	lig4	99	66.375	Oryzias_latipes
ENSXETG00000002654	lig4	99	66.375	ENSORLG00020019607	lig4	99	66.375	Oryzias_latipes_hni
ENSXETG00000002654	lig4	99	66.156	ENSORLG00015017754	lig4	99	66.156	Oryzias_latipes_hsok
ENSXETG00000002654	lig4	75	71.221	ENSOMEG00000003459	lig4	99	71.221	Oryzias_melastigma
ENSXETG00000002654	lig4	99	70.678	ENSOGAG00000032120	LIG4	99	70.678	Otolemur_garnettii
ENSXETG00000002654	lig4	82	75.033	ENSOARG00000005590	LIG4	99	75.033	Ovis_aries
ENSXETG00000002654	lig4	99	72.907	ENSPPAG00000032998	LIG4	99	72.907	Pan_paniscus
ENSXETG00000002654	lig4	99	71.350	ENSPPRG00000017804	LIG4	99	71.350	Panthera_pardus
ENSXETG00000002654	lig4	99	71.239	ENSPTIG00000010051	LIG4	99	71.239	Panthera_tigris_altaica
ENSXETG00000002654	lig4	99	73.018	ENSPTRG00000006025	LIG4	99	73.018	Pan_troglodytes
ENSXETG00000002654	lig4	99	72.467	ENSPANG00000007562	LIG4	99	72.467	Papio_anubis
ENSXETG00000002654	lig4	100	67.105	ENSPKIG00000011645	lig4	99	67.105	Paramormyrops_kingsleyae
ENSXETG00000002654	lig4	100	74.452	ENSPSIG00000001504	LIG4	100	74.452	Pelodiscus_sinensis
ENSXETG00000002654	lig4	98	64.143	ENSPMGG00000013486	lig4	99	63.567	Periophthalmus_magnuspinnatus
ENSXETG00000002654	lig4	99	69.527	ENSPEMG00000000076	Lig4	99	69.527	Peromyscus_maniculatus_bairdii
ENSXETG00000002654	lig4	99	72.497	ENSPCIG00000021882	LIG4	99	72.497	Phascolarctos_cinereus
ENSXETG00000002654	lig4	98	68.263	ENSPFOG00000000797	lig4	98	68.263	Poecilia_formosa
ENSXETG00000002654	lig4	98	68.263	ENSPLAG00000001196	lig4	98	68.263	Poecilia_latipinna
ENSXETG00000002654	lig4	98	68.374	ENSPMEG00000021353	lig4	98	68.374	Poecilia_mexicana
ENSXETG00000002654	lig4	98	68.040	ENSPREG00000007323	lig4	98	68.040	Poecilia_reticulata
ENSXETG00000002654	lig4	99	72.577	ENSPPYG00000005540	LIG4	99	72.577	Pongo_abelii
ENSXETG00000002654	lig4	99	71.696	ENSPVAG00000016403	LIG4	99	71.696	Pteropus_vampyrus
ENSXETG00000002654	lig4	99	66.959	ENSPNYG00000009660	lig4	99	66.959	Pundamilia_nyererei
ENSXETG00000002654	lig4	99	66.963	ENSPNAG00000028056	lig4	99	67.186	Pygocentrus_nattereri
ENSXETG00000002654	lig4	99	66.963	ENSPNAG00000028069	LIG4	99	67.186	Pygocentrus_nattereri
ENSXETG00000002654	lig4	99	70.110	ENSRNOG00000014605	Lig4	99	70.110	Rattus_norvegicus
ENSXETG00000002654	lig4	99	70.925	ENSRBIG00000039962	LIG4	99	70.925	Rhinopithecus_bieti
ENSXETG00000002654	lig4	99	71.696	ENSRROG00000006040	LIG4	99	71.696	Rhinopithecus_roxellana
ENSXETG00000002654	lig4	99	71.696	ENSSBOG00000019029	LIG4	99	71.696	Saimiri_boliviensis_boliviensis
ENSXETG00000002654	lig4	99	69.824	ENSSHAG00000009525	LIG4	99	70.187	Sarcophilus_harrisii
ENSXETG00000002654	lig4	100	66.118	ENSSFOG00015012835	lig4	100	66.118	Scleropages_formosus
ENSXETG00000002654	lig4	100	64.474	ENSSMAG00000011267	lig4	100	64.474	Scophthalmus_maximus
ENSXETG00000002654	lig4	100	67.432	ENSSDUG00000010343	lig4	100	67.432	Seriola_dumerili
ENSXETG00000002654	lig4	100	66.120	ENSSLDG00000003239	lig4	100	66.120	Seriola_lalandi_dorsalis
ENSXETG00000002654	lig4	99	68.053	ENSSARG00000006573	LIG4	99	68.053	Sorex_araneus
ENSXETG00000002654	lig4	92	74.881	ENSSPUG00000002444	LIG4	100	74.881	Sphenodon_punctatus
ENSXETG00000002654	lig4	100	67.544	ENSSPAG00000001609	lig4	100	67.544	Stegastes_partitus
ENSXETG00000002654	lig4	99	70.166	ENSSSCG00000009540	LIG4	99	70.166	Sus_scrofa
ENSXETG00000002654	lig4	99	72.506	ENSTGUG00000010795	LIG4	99	72.506	Taeniopygia_guttata
ENSXETG00000002654	lig4	100	67.360	ENSTRUG00000009984	lig4	100	67.360	Takifugu_rubripes
ENSXETG00000002654	lig4	100	65.899	ENSTNIG00000010348	lig4	100	66.118	Tetraodon_nigroviridis
ENSXETG00000002654	lig4	99	71.586	ENSTBEG00000017741	LIG4	99	71.586	Tupaia_belangeri
ENSXETG00000002654	lig4	99	70.925	ENSTTRG00000012660	LIG4	99	70.925	Tursiops_truncatus
ENSXETG00000002654	lig4	99	70.321	ENSUAMG00000003773	LIG4	99	70.321	Ursus_americanus
ENSXETG00000002654	lig4	97	68.481	ENSXCOG00000017401	lig4	98	67.929	Xiphophorus_couchianus
ENSXETG00000002654	lig4	97	68.707	ENSXMAG00000015142	lig4	98	68.151	Xiphophorus_maculatus