EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXETG00000003371 (Gene tree)
Gene ID: -
Gene Symbol: lsm12
Alias: -
Full Name: LSM12 homolog
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Plus strand
Length: 9147 bases
Position: chrGL172791.1:909540-918686
Accession: XB-GENE-5780031
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000007315	AD	PF09793.9	3e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000007315	-	594	-	ENSXETP00000007315	197 (aa)	-	F6X492

Gene Model

Click here to download ENSXETG00000003371's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000003371's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000003371	lsm12	77	65.000	ENSG00000161654	LSM12	82	65.000	Homo_sapiens
ENSXETG00000003371	lsm12	77	61.250	ENSAPOG00000007907	lsm12b	82	61.250	Acanthochromis_polyacanthus
ENSXETG00000003371	lsm12	77	63.804	ENSAMEG00000018321	LSM12	82	63.804	Ailuropoda_melanoleuca
ENSXETG00000003371	lsm12	77	60.000	ENSACIG00000008538	lsm12b	82	60.000	Amphilophus_citrinellus
ENSXETG00000003371	lsm12	77	61.250	ENSAOCG00000021847	lsm12b	71	61.250	Amphiprion_ocellaris
ENSXETG00000003371	lsm12	77	61.250	ENSAPEG00000002252	lsm12b	82	61.250	Amphiprion_percula
ENSXETG00000003371	lsm12	77	61.250	ENSATEG00000005705	lsm12b	82	61.250	Anabas_testudineus
ENSXETG00000003371	lsm12	78	63.975	ENSACAG00000004618	LSM12	83	63.975	Anolis_carolinensis
ENSXETG00000003371	lsm12	77	65.000	ENSANAG00000029011	LSM12	80	83.486	Aotus_nancymaae
ENSXETG00000003371	lsm12	77	60.625	ENSACLG00000026332	lsm12b	82	60.625	Astatotilapia_calliptera
ENSXETG00000003371	lsm12	77	57.500	ENSAMXG00000036117	lsm12a	74	57.500	Astyanax_mexicanus
ENSXETG00000003371	lsm12	77	61.250	ENSAMXG00000032952	lsm12b	82	61.250	Astyanax_mexicanus
ENSXETG00000003371	lsm12	77	65.000	ENSBTAG00000016252	LSM12	82	65.000	Bos_taurus
ENSXETG00000003371	lsm12	77	65.000	ENSCJAG00000048480	LSM12	80	83.486	Callithrix_jacchus
ENSXETG00000003371	lsm12	77	65.000	ENSCAFG00000014379	LSM12	75	65.000	Canis_familiaris
ENSXETG00000003371	lsm12	77	65.000	ENSCAFG00020012173	LSM12	82	65.000	Canis_lupus_dingo
ENSXETG00000003371	lsm12	77	65.000	ENSCHIG00000018175	LSM12	82	65.000	Capra_hircus
ENSXETG00000003371	lsm12	77	65.000	ENSTSYG00000036361	LSM12	82	65.000	Carlito_syrichta
ENSXETG00000003371	lsm12	72	65.753	ENSCAPG00000009647	LSM12	80	65.753	Cavia_aperea
ENSXETG00000003371	lsm12	77	65.000	ENSCPOG00000012860	LSM12	80	83.486	Cavia_porcellus
ENSXETG00000003371	lsm12	77	65.000	ENSCCAG00000032905	LSM12	80	83.486	Cebus_capucinus
ENSXETG00000003371	lsm12	77	65.000	ENSCATG00000030577	-	80	83.486	Cercocebus_atys
ENSXETG00000003371	lsm12	77	65.000	ENSCLAG00000015759	LSM12	80	83.486	Chinchilla_lanigera
ENSXETG00000003371	lsm12	77	65.000	ENSCSAG00000003486	LSM12	82	65.000	Chlorocebus_sabaeus
ENSXETG00000003371	lsm12	55	82.569	ENSCHOG00000001198	LSM12	100	82.569	Choloepus_hoffmanni
ENSXETG00000003371	lsm12	78	62.112	ENSCPBG00000027105	LSM12	83	62.112	Chrysemys_picta_bellii
ENSXETG00000003371	lsm12	77	65.000	ENSCANG00000043328	LSM12	80	83.486	Colobus_angolensis_palliatus
ENSXETG00000003371	lsm12	77	65.000	ENSCGRG00001002094	Lsm12	80	83.486	Cricetulus_griseus_chok1gshd
ENSXETG00000003371	lsm12	72	65.753	ENSCGRG00000004316	Lsm12	82	65.753	Cricetulus_griseus_crigri
ENSXETG00000003371	lsm12	77	60.625	ENSCSEG00000008434	lsm12b	82	60.625	Cynoglossus_semilaevis
ENSXETG00000003371	lsm12	77	60.625	ENSCVAG00000008755	lsm12b	82	60.625	Cyprinodon_variegatus
ENSXETG00000003371	lsm12	78	61.491	ENSDARG00000109510	lsm12b	82	61.491	Danio_rerio
ENSXETG00000003371	lsm12	78	55.280	ENSDARG00000028848	lsm12a	82	55.280	Danio_rerio
ENSXETG00000003371	lsm12	77	65.000	ENSDNOG00000002418	LSM12	75	65.000	Dasypus_novemcinctus
ENSXETG00000003371	lsm12	77	65.000	ENSDORG00000016381	Lsm12	80	83.486	Dipodomys_ordii
ENSXETG00000003371	lsm12	77	65.000	ENSETEG00000008374	LSM12	82	65.000	Echinops_telfairi
ENSXETG00000003371	lsm12	77	57.500	ENSETEG00000011012	-	91	57.500	Echinops_telfairi
ENSXETG00000003371	lsm12	62	47.761	ENSEBUG00000016299	lsm12a	73	47.761	Eptatretus_burgeri
ENSXETG00000003371	lsm12	77	65.000	ENSEASG00005010155	LSM12	82	65.000	Equus_asinus_asinus
ENSXETG00000003371	lsm12	77	65.000	ENSECAG00000009071	LSM12	80	83.486	Equus_caballus
ENSXETG00000003371	lsm12	72	65.068	ENSEEUG00000002419	-	95	65.068	Erinaceus_europaeus
ENSXETG00000003371	lsm12	77	58.750	ENSELUG00000015538	lsm12b	81	53.125	Esox_lucius
ENSXETG00000003371	lsm12	77	59.375	ENSELUG00000000256	-	82	59.375	Esox_lucius
ENSXETG00000003371	lsm12	77	65.000	ENSFCAG00000037021	LSM12	82	65.000	Felis_catus
ENSXETG00000003371	lsm12	72	66.438	ENSFDAG00000008954	LSM12	85	66.438	Fukomys_damarensis
ENSXETG00000003371	lsm12	77	60.000	ENSFHEG00000019913	lsm12b	82	60.000	Fundulus_heteroclitus
ENSXETG00000003371	lsm12	76	59.494	ENSGMOG00000015449	lsm12b	100	59.494	Gadus_morhua
ENSXETG00000003371	lsm12	72	65.068	ENSGALG00000039803	LSM12	95	65.068	Gallus_gallus
ENSXETG00000003371	lsm12	77	60.625	ENSGAFG00000011829	lsm12b	82	60.625	Gambusia_affinis
ENSXETG00000003371	lsm12	76	60.759	ENSGACG00000003428	lsm12b	100	60.759	Gasterosteus_aculeatus
ENSXETG00000003371	lsm12	78	62.733	ENSGAGG00000021965	LSM12	83	62.733	Gopherus_agassizii
ENSXETG00000003371	lsm12	77	65.000	ENSGGOG00000010589	-	80	83.486	Gorilla_gorilla
ENSXETG00000003371	lsm12	72	61.644	ENSHBUG00000007667	lsm12b	65	61.644	Haplochromis_burtoni
ENSXETG00000003371	lsm12	77	65.000	ENSHGLG00000011411	LSM12	80	83.486	Heterocephalus_glaber_female
ENSXETG00000003371	lsm12	72	65.753	ENSHGLG00100000241	LSM12	78	65.753	Heterocephalus_glaber_male
ENSXETG00000003371	lsm12	77	59.375	ENSHCOG00000002094	lsm12b	82	59.375	Hippocampus_comes
ENSXETG00000003371	lsm12	77	60.625	ENSIPUG00000014800	lsm12	82	60.625	Ictalurus_punctatus
ENSXETG00000003371	lsm12	75	57.051	ENSIPUG00000008936	lsm12a	79	57.051	Ictalurus_punctatus
ENSXETG00000003371	lsm12	77	65.000	ENSSTOG00000007403	LSM12	80	83.486	Ictidomys_tridecemlineatus
ENSXETG00000003371	lsm12	77	58.385	ENSJJAG00000011793	-	84	58.385	Jaculus_jaculus
ENSXETG00000003371	lsm12	77	65.000	ENSJJAG00000004364	-	80	83.486	Jaculus_jaculus
ENSXETG00000003371	lsm12	62	55.385	ENSJJAG00000014652	-	77	55.385	Jaculus_jaculus
ENSXETG00000003371	lsm12	77	61.250	ENSLBEG00000027999	lsm12b	82	61.250	Labrus_bergylta
ENSXETG00000003371	lsm12	77	65.000	ENSLACG00000015981	LSM12	82	65.000	Latimeria_chalumnae
ENSXETG00000003371	lsm12	77	61.250	ENSLOCG00000013079	lsm12b	81	61.250	Lepisosteus_oculatus
ENSXETG00000003371	lsm12	77	65.000	ENSLAFG00000005202	LSM12	82	65.000	Loxodonta_africana
ENSXETG00000003371	lsm12	77	65.000	ENSMFAG00000031376	LSM12	80	83.486	Macaca_fascicularis
ENSXETG00000003371	lsm12	77	65.000	ENSMMUG00000006804	LSM12	80	83.486	Macaca_mulatta
ENSXETG00000003371	lsm12	77	65.000	ENSMNEG00000030594	-	80	83.486	Macaca_nemestrina
ENSXETG00000003371	lsm12	77	65.000	ENSMLEG00000039934	LSM12	80	83.486	Mandrillus_leucophaeus
ENSXETG00000003371	lsm12	77	61.250	ENSMAMG00000004279	lsm12b	82	61.250	Mastacembelus_armatus
ENSXETG00000003371	lsm12	77	60.625	ENSMZEG00005005754	lsm12b	82	60.625	Maylandia_zebra
ENSXETG00000003371	lsm12	77	65.000	ENSMICG00000037219	LSM12	80	83.486	Microcebus_murinus
ENSXETG00000003371	lsm12	77	65.000	ENSMOCG00000019878	-	80	83.486	Microtus_ochrogaster
ENSXETG00000003371	lsm12	79	50.000	ENSMOCG00000017015	-	72	50.000	Microtus_ochrogaster
ENSXETG00000003371	lsm12	77	60.625	ENSMMOG00000020848	lsm12b	82	60.625	Mola_mola
ENSXETG00000003371	lsm12	77	61.250	ENSMALG00000007578	lsm12b	82	61.250	Monopterus_albus
ENSXETG00000003371	lsm12	77	64.375	MGP_CAROLIEiJ_G0017241	Lsm12	80	82.569	Mus_caroli
ENSXETG00000003371	lsm12	77	65.000	ENSMUSG00000020922	Lsm12	80	83.486	Mus_musculus
ENSXETG00000003371	lsm12	55	83.486	MGP_PahariEiJ_G0018371	Lsm12	80	83.486	Mus_pahari
ENSXETG00000003371	lsm12	77	64.375	MGP_SPRETEiJ_G0018084	Lsm12	79	83.333	Mus_spretus
ENSXETG00000003371	lsm12	77	64.375	ENSMLUG00000006391	LSM12	82	64.375	Myotis_lucifugus
ENSXETG00000003371	lsm12	58	67.544	ENSNGAG00000015429	-	57	67.544	Nannospalax_galili
ENSXETG00000003371	lsm12	77	65.000	ENSNGAG00000001870	Lsm12	80	83.486	Nannospalax_galili
ENSXETG00000003371	lsm12	77	60.625	ENSNBRG00000006266	lsm12b	82	60.625	Neolamprologus_brichardi
ENSXETG00000003371	lsm12	77	65.000	ENSNLEG00000005580	-	80	83.486	Nomascus_leucogenys
ENSXETG00000003371	lsm12	62	64.615	ENSMEUG00000007501	-	79	64.615	Notamacropus_eugenii
ENSXETG00000003371	lsm12	77	65.000	ENSOPRG00000008552	LSM12	82	65.000	Ochotona_princeps
ENSXETG00000003371	lsm12	77	64.375	ENSODEG00000017998	-	80	82.569	Octodon_degus
ENSXETG00000003371	lsm12	76	62.338	ENSODEG00000007886	-	60	62.338	Octodon_degus
ENSXETG00000003371	lsm12	77	60.625	ENSONIG00000007933	lsm12b	82	60.625	Oreochromis_niloticus
ENSXETG00000003371	lsm12	77	61.635	ENSOCUG00000021254	-	82	61.635	Oryctolagus_cuniculus
ENSXETG00000003371	lsm12	77	63.804	ENSOCUG00000008566	-	82	63.804	Oryctolagus_cuniculus
ENSXETG00000003371	lsm12	77	63.522	ENSOCUG00000027889	-	82	63.522	Oryctolagus_cuniculus
ENSXETG00000003371	lsm12	77	59.748	ENSOCUG00000024823	-	82	59.748	Oryctolagus_cuniculus
ENSXETG00000003371	lsm12	77	60.625	ENSORLG00000011310	lsm12b	82	60.625	Oryzias_latipes
ENSXETG00000003371	lsm12	77	60.625	ENSORLG00020002060	lsm12b	75	60.625	Oryzias_latipes_hni
ENSXETG00000003371	lsm12	77	60.625	ENSORLG00015001647	lsm12b	75	60.625	Oryzias_latipes_hsok
ENSXETG00000003371	lsm12	77	61.250	ENSOMEG00000006184	lsm12b	75	61.250	Oryzias_melastigma
ENSXETG00000003371	lsm12	77	65.000	ENSOGAG00000010489	LSM12	82	65.000	Otolemur_garnettii
ENSXETG00000003371	lsm12	77	62.651	ENSOARG00000006589	LSM12	83	62.651	Ovis_aries
ENSXETG00000003371	lsm12	55	83.486	ENSPPAG00000034974	-	77	83.486	Pan_paniscus
ENSXETG00000003371	lsm12	77	65.000	ENSPPRG00000023420	LSM12	82	65.000	Panthera_pardus
ENSXETG00000003371	lsm12	55	81.651	ENSPTIG00000014850	-	79	81.651	Panthera_tigris_altaica
ENSXETG00000003371	lsm12	72	65.753	ENSPTIG00000012704	-	78	65.753	Panthera_tigris_altaica
ENSXETG00000003371	lsm12	77	65.000	ENSPTRG00000009261	LSM12	80	83.486	Pan_troglodytes
ENSXETG00000003371	lsm12	77	65.000	ENSPANG00000021315	-	80	83.486	Papio_anubis
ENSXETG00000003371	lsm12	77	62.500	ENSPKIG00000021058	lsm12b	82	62.500	Paramormyrops_kingsleyae
ENSXETG00000003371	lsm12	55	73.394	ENSPKIG00000017932	-	56	73.394	Paramormyrops_kingsleyae
ENSXETG00000003371	lsm12	77	61.250	ENSPMGG00000021344	lsm12b	82	61.250	Periophthalmus_magnuspinnatus
ENSXETG00000003371	lsm12	77	65.000	ENSPEMG00000012199	Lsm12	80	83.486	Peromyscus_maniculatus_bairdii
ENSXETG00000003371	lsm12	66	50.704	ENSPMAG00000005461	lsm12a	80	50.704	Petromyzon_marinus
ENSXETG00000003371	lsm12	77	64.375	ENSPCIG00000020244	LSM12	82	64.375	Phascolarctos_cinereus
ENSXETG00000003371	lsm12	77	60.000	ENSPFOG00000015930	lsm12b	82	60.000	Poecilia_formosa
ENSXETG00000003371	lsm12	77	60.000	ENSPLAG00000021089	lsm12b	82	60.000	Poecilia_latipinna
ENSXETG00000003371	lsm12	77	60.000	ENSPMEG00000012961	lsm12b	82	60.000	Poecilia_mexicana
ENSXETG00000003371	lsm12	77	60.625	ENSPREG00000010236	lsm12b	89	60.625	Poecilia_reticulata
ENSXETG00000003371	lsm12	77	65.000	ENSPPYG00000008344	LSM12	82	65.000	Pongo_abelii
ENSXETG00000003371	lsm12	62	65.385	ENSPCAG00000008790	LSM12	82	65.385	Procavia_capensis
ENSXETG00000003371	lsm12	77	65.000	ENSPCOG00000027951	LSM12	80	83.486	Propithecus_coquereli
ENSXETG00000003371	lsm12	77	65.000	ENSPVAG00000013706	LSM12	82	65.000	Pteropus_vampyrus
ENSXETG00000003371	lsm12	77	60.625	ENSPNYG00000003386	lsm12b	82	60.625	Pundamilia_nyererei
ENSXETG00000003371	lsm12	77	60.625	ENSPNAG00000004186	lsm12b	82	60.625	Pygocentrus_nattereri
ENSXETG00000003371	lsm12	77	61.250	ENSPNAG00000018435	lsm12a	82	61.250	Pygocentrus_nattereri
ENSXETG00000003371	lsm12	77	65.000	ENSRNOG00000020894	Lsm12	82	65.000	Rattus_norvegicus
ENSXETG00000003371	lsm12	77	65.000	ENSRBIG00000027910	LSM12	80	83.486	Rhinopithecus_bieti
ENSXETG00000003371	lsm12	77	65.000	ENSRROG00000045530	-	80	83.486	Rhinopithecus_roxellana
ENSXETG00000003371	lsm12	53	73.333	ENSRROG00000000537	-	82	73.333	Rhinopithecus_roxellana
ENSXETG00000003371	lsm12	77	65.000	ENSSBOG00000025310	LSM12	80	83.486	Saimiri_boliviensis_boliviensis
ENSXETG00000003371	lsm12	76	62.658	ENSSHAG00000014914	LSM12	100	62.658	Sarcophilus_harrisii
ENSXETG00000003371	lsm12	77	59.375	ENSSFOG00015020392	lsm12a	82	59.375	Scleropages_formosus
ENSXETG00000003371	lsm12	77	61.250	ENSSFOG00015009612	lsm12	82	61.250	Scleropages_formosus
ENSXETG00000003371	lsm12	77	61.250	ENSSMAG00000008089	lsm12b	82	61.250	Scophthalmus_maximus
ENSXETG00000003371	lsm12	77	61.875	ENSSDUG00000012711	lsm12b	82	61.875	Seriola_dumerili
ENSXETG00000003371	lsm12	77	61.875	ENSSLDG00000007404	lsm12b	82	61.875	Seriola_lalandi_dorsalis
ENSXETG00000003371	lsm12	72	65.753	ENSSARG00000005537	LSM12	95	65.753	Sorex_araneus
ENSXETG00000003371	lsm12	78	65.217	ENSSPUG00000011984	LSM12	83	65.217	Sphenodon_punctatus
ENSXETG00000003371	lsm12	77	61.250	ENSSPAG00000017058	lsm12b	82	61.250	Stegastes_partitus
ENSXETG00000003371	lsm12	77	65.000	ENSSSCG00000032394	LSM12	82	65.000	Sus_scrofa
ENSXETG00000003371	lsm12	77	60.625	ENSTRUG00000007121	lsm12b	82	60.625	Takifugu_rubripes
ENSXETG00000003371	lsm12	77	60.000	ENSTNIG00000014436	lsm12b	82	60.000	Tetraodon_nigroviridis
ENSXETG00000003371	lsm12	77	65.000	ENSTBEG00000012523	-	82	65.000	Tupaia_belangeri
ENSXETG00000003371	lsm12	77	61.875	ENSTBEG00000012392	-	82	61.875	Tupaia_belangeri
ENSXETG00000003371	lsm12	77	65.000	ENSTTRG00000010433	LSM12	82	65.000	Tursiops_truncatus
ENSXETG00000003371	lsm12	77	65.000	ENSUAMG00000006313	LSM12	91	65.753	Ursus_americanus
ENSXETG00000003371	lsm12	72	65.753	ENSUMAG00000012987	LSM12	83	65.753	Ursus_maritimus
ENSXETG00000003371	lsm12	77	58.750	ENSVPAG00000011145	LSM12	82	58.750	Vicugna_pacos
ENSXETG00000003371	lsm12	77	65.000	ENSVVUG00000017581	LSM12	82	65.000	Vulpes_vulpes
ENSXETG00000003371	lsm12	77	60.625	ENSXCOG00000003994	lsm12b	82	60.625	Xiphophorus_couchianus
ENSXETG00000003371	lsm12	77	60.625	ENSXMAG00000020950	lsm12b	82	60.625	Xiphophorus_maculatus