EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXETG00000003434 (Gene tree)
Gene ID: -
Gene Symbol: exosc1
Alias: -
Full Name: Xenopus tropicalis exosome component 1 (exosc1)%2C mRNA.
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Plus strand
Length: 4651 bases
Position: chrGL173153.1:566872-571522
Accession: NM_001130379
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000007435	EXOSC1	PF10447.9	1.6e-16	1	1
ENSXETP00000007435	ECR1_N	PF14382.6	4.7e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000007435	-	1103	-	ENSXETP00000007435	194 (aa)	-	B3DM70

Gene Model

Click here to download ENSXETG00000003434's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000003434's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000003434	exosc1	99	78.646	ENSG00000171311	EXOSC1	98	78.646	Homo_sapiens
ENSXETG00000003434	exosc1	99	76.684	ENSAPOG00000007822	exosc1	99	76.684	Acanthochromis_polyacanthus
ENSXETG00000003434	exosc1	99	79.167	ENSAMEG00000000129	EXOSC1	98	79.167	Ailuropoda_melanoleuca
ENSXETG00000003434	exosc1	95	77.174	ENSACIG00000018956	exosc1	90	77.174	Amphilophus_citrinellus
ENSXETG00000003434	exosc1	99	76.684	ENSAOCG00000010699	exosc1	99	76.684	Amphiprion_ocellaris
ENSXETG00000003434	exosc1	92	67.598	ENSAPEG00000012690	exosc1	96	67.598	Amphiprion_percula
ENSXETG00000003434	exosc1	99	77.202	ENSATEG00000018683	exosc1	99	77.202	Anabas_testudineus
ENSXETG00000003434	exosc1	100	76.289	ENSACAG00000002101	EXOSC1	99	76.289	Anolis_carolinensis
ENSXETG00000003434	exosc1	99	78.646	ENSANAG00000034669	EXOSC1	98	78.646	Aotus_nancymaae
ENSXETG00000003434	exosc1	99	76.684	ENSACLG00000021243	exosc1	99	76.684	Astatotilapia_calliptera
ENSXETG00000003434	exosc1	99	79.275	ENSAMXG00000011116	exosc1	99	79.275	Astyanax_mexicanus
ENSXETG00000003434	exosc1	99	79.167	ENSBTAG00000012699	EXOSC1	98	79.167	Bos_taurus
ENSXETG00000003434	exosc1	92	35.450	WBGene00012966	exos-1	90	35.450	Caenorhabditis_elegans
ENSXETG00000003434	exosc1	99	79.167	ENSCJAG00000016586	EXOSC1	98	79.167	Callithrix_jacchus
ENSXETG00000003434	exosc1	99	79.167	ENSCAFG00000009068	EXOSC1	93	79.167	Canis_familiaris
ENSXETG00000003434	exosc1	99	79.167	ENSCAFG00020006002	EXOSC1	93	79.167	Canis_lupus_dingo
ENSXETG00000003434	exosc1	99	79.167	ENSCHIG00000015253	EXOSC1	98	79.167	Capra_hircus
ENSXETG00000003434	exosc1	99	79.167	ENSTSYG00000000760	EXOSC1	98	79.167	Carlito_syrichta
ENSXETG00000003434	exosc1	99	78.646	ENSCPOG00000001173	EXOSC1	98	78.646	Cavia_porcellus
ENSXETG00000003434	exosc1	99	44.330	ENSCCAG00000023986	EXOSC1	98	44.330	Cebus_capucinus
ENSXETG00000003434	exosc1	99	78.646	ENSCATG00000034114	EXOSC1	98	78.646	Cercocebus_atys
ENSXETG00000003434	exosc1	99	78.646	ENSCLAG00000002463	EXOSC1	98	78.646	Chinchilla_lanigera
ENSXETG00000003434	exosc1	99	78.125	ENSCSAG00000005870	EXOSC1	98	78.125	Chlorocebus_sabaeus
ENSXETG00000003434	exosc1	95	67.391	ENSCHOG00000006477	EXOSC1	98	67.391	Choloepus_hoffmanni
ENSXETG00000003434	exosc1	55	68.868	ENSCPBG00000011949	EXOSC1	88	68.868	Chrysemys_picta_bellii
ENSXETG00000003434	exosc1	96	54.011	ENSCING00000022734	-	89	54.011	Ciona_intestinalis
ENSXETG00000003434	exosc1	96	54.011	ENSCSAVG00000010865	-	95	54.011	Ciona_savignyi
ENSXETG00000003434	exosc1	99	78.646	ENSCANG00000034159	EXOSC1	98	78.646	Colobus_angolensis_palliatus
ENSXETG00000003434	exosc1	99	79.688	ENSCGRG00001000335	Exosc1	98	79.688	Cricetulus_griseus_chok1gshd
ENSXETG00000003434	exosc1	99	79.688	ENSCGRG00000011602	Exosc1	98	79.688	Cricetulus_griseus_crigri
ENSXETG00000003434	exosc1	99	66.321	ENSCSEG00000007895	exosc1	96	66.321	Cynoglossus_semilaevis
ENSXETG00000003434	exosc1	99	72.539	ENSCVAG00000016748	exosc1	99	72.539	Cyprinodon_variegatus
ENSXETG00000003434	exosc1	99	78.756	ENSDARG00000059841	exosc1	99	78.756	Danio_rerio
ENSXETG00000003434	exosc1	74	74.483	ENSDNOG00000007983	EXOSC1	98	74.483	Dasypus_novemcinctus
ENSXETG00000003434	exosc1	99	78.125	ENSDORG00000016528	Exosc1	98	78.125	Dipodomys_ordii
ENSXETG00000003434	exosc1	95	48.421	FBgn0032346	Csl4	92	48.421	Drosophila_melanogaster
ENSXETG00000003434	exosc1	99	79.167	ENSETEG00000002469	-	98	79.167	Echinops_telfairi
ENSXETG00000003434	exosc1	98	67.010	ENSEBUG00000008164	exosc1	97	67.010	Eptatretus_burgeri
ENSXETG00000003434	exosc1	99	72.917	ENSEASG00005008684	EXOSC1	98	72.917	Equus_asinus_asinus
ENSXETG00000003434	exosc1	60	60.345	ENSECAG00000010621	EXOSC1	69	60.345	Equus_caballus
ENSXETG00000003434	exosc1	99	77.604	ENSEEUG00000005647	EXOSC1	98	77.604	Erinaceus_europaeus
ENSXETG00000003434	exosc1	95	78.261	ENSELUG00000017369	exosc1	98	62.887	Esox_lucius
ENSXETG00000003434	exosc1	99	79.167	ENSFCAG00000040563	EXOSC1	93	79.167	Felis_catus
ENSXETG00000003434	exosc1	99	76.562	ENSFALG00000008450	EXOSC1	98	76.562	Ficedula_albicollis
ENSXETG00000003434	exosc1	99	79.167	ENSFDAG00000000846	EXOSC1	98	79.167	Fukomys_damarensis
ENSXETG00000003434	exosc1	99	72.539	ENSFHEG00000009154	exosc1	99	72.539	Fundulus_heteroclitus
ENSXETG00000003434	exosc1	99	76.684	ENSGMOG00000008993	exosc1	99	76.684	Gadus_morhua
ENSXETG00000003434	exosc1	99	68.229	ENSGALG00000039917	EXOSC1	100	82.192	Gallus_gallus
ENSXETG00000003434	exosc1	99	73.575	ENSGAFG00000010265	exosc1	95	73.575	Gambusia_affinis
ENSXETG00000003434	exosc1	99	76.166	ENSGACG00000018936	exosc1	99	76.166	Gasterosteus_aculeatus
ENSXETG00000003434	exosc1	99	79.688	ENSGAGG00000019192	EXOSC1	98	79.688	Gopherus_agassizii
ENSXETG00000003434	exosc1	99	69.271	ENSGGOG00000003099	EXOSC1	98	69.271	Gorilla_gorilla
ENSXETG00000003434	exosc1	99	76.684	ENSHBUG00000017857	exosc1	99	76.684	Haplochromis_burtoni
ENSXETG00000003434	exosc1	99	79.167	ENSHGLG00000016927	EXOSC1	98	79.167	Heterocephalus_glaber_female
ENSXETG00000003434	exosc1	99	79.167	ENSHGLG00100012208	EXOSC1	98	79.167	Heterocephalus_glaber_male
ENSXETG00000003434	exosc1	99	75.648	ENSHCOG00000019882	exosc1	99	75.648	Hippocampus_comes
ENSXETG00000003434	exosc1	99	76.684	ENSIPUG00000007685	exosc1	99	76.684	Ictalurus_punctatus
ENSXETG00000003434	exosc1	99	78.646	ENSSTOG00000006615	EXOSC1	98	78.646	Ictidomys_tridecemlineatus
ENSXETG00000003434	exosc1	61	63.025	ENSSTOG00000029860	-	91	63.025	Ictidomys_tridecemlineatus
ENSXETG00000003434	exosc1	99	79.167	ENSJJAG00000013311	Exosc1	98	79.167	Jaculus_jaculus
ENSXETG00000003434	exosc1	100	76.289	ENSKMAG00000001202	exosc1	82	76.289	Kryptolebias_marmoratus
ENSXETG00000003434	exosc1	99	76.166	ENSLBEG00000011448	exosc1	99	76.166	Labrus_bergylta
ENSXETG00000003434	exosc1	100	58.500	ENSLOCG00000003776	exosc1	100	58.500	Lepisosteus_oculatus
ENSXETG00000003434	exosc1	99	79.688	ENSLAFG00000015983	EXOSC1	98	79.688	Loxodonta_africana
ENSXETG00000003434	exosc1	99	78.646	ENSMFAG00000001493	EXOSC1	98	78.646	Macaca_fascicularis
ENSXETG00000003434	exosc1	99	78.646	ENSMMUG00000020028	EXOSC1	98	72.449	Macaca_mulatta
ENSXETG00000003434	exosc1	99	78.646	ENSMNEG00000029816	EXOSC1	98	78.646	Macaca_nemestrina
ENSXETG00000003434	exosc1	99	73.438	ENSMLEG00000027643	EXOSC1	98	73.438	Mandrillus_leucophaeus
ENSXETG00000003434	exosc1	99	76.684	ENSMAMG00000012200	exosc1	99	76.684	Mastacembelus_armatus
ENSXETG00000003434	exosc1	99	76.684	ENSMZEG00005007042	exosc1	99	76.684	Maylandia_zebra
ENSXETG00000003434	exosc1	99	69.792	ENSMAUG00000020462	-	98	69.792	Mesocricetus_auratus
ENSXETG00000003434	exosc1	99	79.167	ENSMICG00000007664	EXOSC1	91	79.167	Microcebus_murinus
ENSXETG00000003434	exosc1	97	74.074	ENSMOCG00000017124	-	96	74.074	Microtus_ochrogaster
ENSXETG00000003434	exosc1	99	79.688	ENSMOCG00000006004	-	98	79.688	Microtus_ochrogaster
ENSXETG00000003434	exosc1	94	58.791	ENSMMOG00000021403	exosc1	94	58.791	Mola_mola
ENSXETG00000003434	exosc1	99	78.238	ENSMODG00000004213	EXOSC1	98	78.238	Monodelphis_domestica
ENSXETG00000003434	exosc1	95	77.174	ENSMALG00000007061	exosc1	92	77.174	Monopterus_albus
ENSXETG00000003434	exosc1	99	79.688	MGP_CAROLIEiJ_G0022959	Exosc1	98	79.688	Mus_caroli
ENSXETG00000003434	exosc1	99	79.688	ENSMUSG00000034321	Exosc1	98	79.688	Mus_musculus
ENSXETG00000003434	exosc1	99	79.688	MGP_PahariEiJ_G0014449	Exosc1	98	79.688	Mus_pahari
ENSXETG00000003434	exosc1	99	79.688	MGP_SPRETEiJ_G0023880	Exosc1	98	79.688	Mus_spretus
ENSXETG00000003434	exosc1	99	79.167	ENSMPUG00000017044	EXOSC1	98	79.167	Mustela_putorius_furo
ENSXETG00000003434	exosc1	99	78.646	ENSMLUG00000009228	EXOSC1	98	78.646	Myotis_lucifugus
ENSXETG00000003434	exosc1	99	79.688	ENSNGAG00000022033	Exosc1	98	79.688	Nannospalax_galili
ENSXETG00000003434	exosc1	99	59.585	ENSNBRG00000024007	exosc1	99	59.585	Neolamprologus_brichardi
ENSXETG00000003434	exosc1	99	78.125	ENSNLEG00000013872	EXOSC1	98	78.125	Nomascus_leucogenys
ENSXETG00000003434	exosc1	58	72.321	ENSMEUG00000002246	EXOSC1	97	72.321	Notamacropus_eugenii
ENSXETG00000003434	exosc1	99	79.167	ENSOPRG00000005065	EXOSC1	98	79.167	Ochotona_princeps
ENSXETG00000003434	exosc1	99	79.167	ENSODEG00000016709	EXOSC1	98	79.167	Octodon_degus
ENSXETG00000003434	exosc1	99	76.684	ENSONIG00000017683	exosc1	99	76.684	Oreochromis_niloticus
ENSXETG00000003434	exosc1	59	85.217	ENSOANG00000006563	EXOSC1	98	83.065	Ornithorhynchus_anatinus
ENSXETG00000003434	exosc1	99	78.238	ENSOCUG00000011898	-	98	78.238	Oryctolagus_cuniculus
ENSXETG00000003434	exosc1	99	73.958	ENSOCUG00000026461	-	98	73.958	Oryctolagus_cuniculus
ENSXETG00000003434	exosc1	99	74.742	ENSORLG00000011595	exosc1	99	74.742	Oryzias_latipes
ENSXETG00000003434	exosc1	99	74.742	ENSORLG00020005831	exosc1	99	74.742	Oryzias_latipes_hni
ENSXETG00000003434	exosc1	99	74.742	ENSORLG00015004317	exosc1	99	74.742	Oryzias_latipes_hsok
ENSXETG00000003434	exosc1	99	61.658	ENSOMEG00000013907	exosc1	99	61.658	Oryzias_melastigma
ENSXETG00000003434	exosc1	99	78.646	ENSOGAG00000016259	EXOSC1	98	78.646	Otolemur_garnettii
ENSXETG00000003434	exosc1	99	79.167	ENSOARG00000010136	EXOSC1	98	79.167	Ovis_aries
ENSXETG00000003434	exosc1	99	73.333	ENSPPAG00000039842	EXOSC1	98	73.333	Pan_paniscus
ENSXETG00000003434	exosc1	99	79.167	ENSPPRG00000023366	EXOSC1	98	79.167	Panthera_pardus
ENSXETG00000003434	exosc1	99	79.167	ENSPTIG00000017701	EXOSC1	98	79.167	Panthera_tigris_altaica
ENSXETG00000003434	exosc1	99	78.646	ENSPTRG00000002808	EXOSC1	98	78.646	Pan_troglodytes
ENSXETG00000003434	exosc1	99	78.646	ENSPANG00000021324	EXOSC1	98	78.646	Papio_anubis
ENSXETG00000003434	exosc1	99	77.720	ENSPKIG00000016037	exosc1	99	77.720	Paramormyrops_kingsleyae
ENSXETG00000003434	exosc1	75	80.137	ENSPSIG00000013571	EXOSC1	98	82.787	Pelodiscus_sinensis
ENSXETG00000003434	exosc1	99	65.285	ENSPMGG00000014002	exosc1	99	65.285	Periophthalmus_magnuspinnatus
ENSXETG00000003434	exosc1	99	79.688	ENSPEMG00000010710	-	98	79.688	Peromyscus_maniculatus_bairdii
ENSXETG00000003434	exosc1	96	69.519	ENSPMAG00000000195	exosc1	95	69.519	Petromyzon_marinus
ENSXETG00000003434	exosc1	99	78.125	ENSPCIG00000002210	EXOSC1	97	78.125	Phascolarctos_cinereus
ENSXETG00000003434	exosc1	99	72.539	ENSPFOG00000006755	exosc1	95	72.539	Poecilia_formosa
ENSXETG00000003434	exosc1	99	72.539	ENSPLAG00000005880	exosc1	99	72.539	Poecilia_latipinna
ENSXETG00000003434	exosc1	99	72.539	ENSPMEG00000015598	exosc1	95	72.539	Poecilia_mexicana
ENSXETG00000003434	exosc1	99	63.212	ENSPREG00000000405	exosc1	94	63.212	Poecilia_reticulata
ENSXETG00000003434	exosc1	99	78.646	ENSPPYG00000002531	EXOSC1	98	78.646	Pongo_abelii
ENSXETG00000003434	exosc1	99	79.167	ENSPCAG00000009135	EXOSC1	98	79.167	Procavia_capensis
ENSXETG00000003434	exosc1	99	73.438	ENSPCOG00000027539	EXOSC1	98	73.438	Propithecus_coquereli
ENSXETG00000003434	exosc1	99	78.646	ENSPVAG00000003372	EXOSC1	98	78.646	Pteropus_vampyrus
ENSXETG00000003434	exosc1	99	76.684	ENSPNYG00000021745	exosc1	99	76.684	Pundamilia_nyererei
ENSXETG00000003434	exosc1	99	78.238	ENSPNAG00000001944	exosc1	99	78.238	Pygocentrus_nattereri
ENSXETG00000003434	exosc1	99	79.688	ENSRNOG00000048708	Exosc1	98	79.688	Rattus_norvegicus
ENSXETG00000003434	exosc1	99	78.646	ENSRBIG00000035618	EXOSC1	98	78.646	Rhinopithecus_bieti
ENSXETG00000003434	exosc1	99	78.646	ENSRROG00000032589	EXOSC1	91	78.646	Rhinopithecus_roxellana
ENSXETG00000003434	exosc1	65	34.969	YNL232W	CSL4	55	34.969	Saccharomyces_cerevisiae
ENSXETG00000003434	exosc1	99	78.646	ENSSBOG00000000359	EXOSC1	98	78.646	Saimiri_boliviensis_boliviensis
ENSXETG00000003434	exosc1	75	82.993	ENSSHAG00000018219	EXOSC1	100	82.993	Sarcophilus_harrisii
ENSXETG00000003434	exosc1	99	77.202	ENSSFOG00015009069	exosc1	99	77.202	Scleropages_formosus
ENSXETG00000003434	exosc1	99	74.093	ENSSFOG00015016289	-	99	74.093	Scleropages_formosus
ENSXETG00000003434	exosc1	99	77.202	ENSSMAG00000003721	exosc1	99	77.202	Scophthalmus_maximus
ENSXETG00000003434	exosc1	99	76.684	ENSSDUG00000002993	exosc1	99	76.684	Seriola_dumerili
ENSXETG00000003434	exosc1	99	76.684	ENSSLDG00000025181	exosc1	99	76.684	Seriola_lalandi_dorsalis
ENSXETG00000003434	exosc1	99	68.750	ENSSARG00000000162	EXOSC1	98	68.750	Sorex_araneus
ENSXETG00000003434	exosc1	98	77.487	ENSSPUG00000012263	EXOSC1	98	77.487	Sphenodon_punctatus
ENSXETG00000003434	exosc1	99	68.912	ENSSPAG00000016792	exosc1	83	68.912	Stegastes_partitus
ENSXETG00000003434	exosc1	99	79.167	ENSSSCG00000010518	EXOSC1	90	79.167	Sus_scrofa
ENSXETG00000003434	exosc1	99	76.042	ENSTGUG00000009692	EXOSC1	99	76.042	Taeniopygia_guttata
ENSXETG00000003434	exosc1	97	69.312	ENSTRUG00000007706	exosc1	98	69.312	Takifugu_rubripes
ENSXETG00000003434	exosc1	97	69.271	ENSTNIG00000014079	exosc1	97	69.271	Tetraodon_nigroviridis
ENSXETG00000003434	exosc1	99	73.958	ENSTBEG00000006011	EXOSC1	98	73.958	Tupaia_belangeri
ENSXETG00000003434	exosc1	95	79.348	ENSTTRG00000009887	EXOSC1	100	79.348	Tursiops_truncatus
ENSXETG00000003434	exosc1	99	65.104	ENSUAMG00000010266	EXOSC1	98	65.104	Ursus_americanus
ENSXETG00000003434	exosc1	99	66.667	ENSUMAG00000022002	EXOSC1	98	66.667	Ursus_maritimus
ENSXETG00000003434	exosc1	99	79.167	ENSVVUG00000023192	EXOSC1	62	79.167	Vulpes_vulpes
ENSXETG00000003434	exosc1	62	79.167	ENSXCOG00000014499	exosc1	92	79.167	Xiphophorus_couchianus
ENSXETG00000003434	exosc1	100	62.887	ENSXMAG00000023382	exosc1	94	62.887	Xiphophorus_maculatus