EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXETG00000003760 (Gene tree)
Gene ID: -
Gene Symbol: setd1b
Alias: -
Full Name: Xenopus tropicalis SET domain containing 1B (setd1b)%2C mRNA.
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Plus strand
Length: 26130 bases
Position: chrGL172947.1:1000298-1026427
Accession: NM_001079181
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000008143	RRM_1	PF00076.22	3.2e-08	1	1
ENSXETP00000062336	RRM_1	PF00076.22	3.2e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000062636	-	6113	-	ENSXETP00000062336	1950 (aa)	-	F6ST06
ENSXETT00000008143	-	6134	XM_018094579	ENSXETP00000008143	1957 (aa)	XP_017950068	F7AAQ2

Gene Model

Click here to download ENSXETG00000003760's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000003760's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000003760	setd1b	84	53.825	ENSACIG00000016453	setd1ba	96	52.727	Amphilophus_citrinellus
ENSXETG00000003760	setd1b	85	57.323	ENSAPEG00000010762	setd1ba	52	78.869	Amphiprion_percula
ENSXETG00000003760	setd1b	67	84.142	ENSATEG00000021563	setd1ba	55	82.222	Anabas_testudineus
ENSXETG00000003760	setd1b	99	61.233	ENSAPLG00000005217	SETD1B	98	72.409	Anas_platyrhynchos
ENSXETG00000003760	setd1b	52	70.208	ENSCJAG00000016930	SETD1B	94	56.287	Callithrix_jacchus
ENSXETG00000003760	setd1b	55	70.358	ENSCAFG00000016758	SETD1A	50	69.497	Canis_familiaris
ENSXETG00000003760	setd1b	51	74.750	ENSCHIG00000013406	SETD1B	70	57.054	Capra_hircus
ENSXETG00000003760	setd1b	52	75.000	ENSTSYG00000033777	SETD1B	63	75.000	Carlito_syrichta
ENSXETG00000003760	setd1b	53	80.576	ENSCPBG00000026067	SETD1B	62	62.353	Chrysemys_picta_bellii
ENSXETG00000003760	setd1b	66	73.413	ENSCANG00000023445	SETD1B	58	73.256	Colobus_angolensis_palliatus
ENSXETG00000003760	setd1b	87	51.240	ENSCVAG00000022068	setd1ba	56	68.593	Cyprinodon_variegatus
ENSXETG00000003760	setd1b	51	54.915	ENSELUG00000020846	setd1ba	63	49.379	Esox_lucius
ENSXETG00000003760	setd1b	50	80.259	ENSGMOG00000009831	setd1ba	55	80.259	Gadus_morhua
ENSXETG00000003760	setd1b	84	58.796	ENSGAFG00000008712	setd1ba	67	57.273	Gambusia_affinis
ENSXETG00000003760	setd1b	70	83.819	ENSGACG00000017002	setd1ba	74	81.905	Gasterosteus_aculeatus
ENSXETG00000003760	setd1b	63	60.678	ENSGAGG00000025013	SETD1B	63	61.133	Gopherus_agassizii
ENSXETG00000003760	setd1b	84	56.693	ENSHCOG00000001951	setd1ba	66	54.436	Hippocampus_comes
ENSXETG00000003760	setd1b	72	51.216	ENSIPUG00000024741	setd1b	96	51.835	Ictalurus_punctatus
ENSXETG00000003760	setd1b	50	72.188	ENSSTOG00000012430	SETD1B	94	56.456	Ictidomys_tridecemlineatus
ENSXETG00000003760	setd1b	68	78.571	ENSLBEG00000020113	setd1ba	52	78.571	Labrus_bergylta
ENSXETG00000003760	setd1b	52	72.684	ENSMFAG00000030930	SETD1B	74	56.641	Macaca_fascicularis
ENSXETG00000003760	setd1b	51	70.960	ENSMMUG00000012842	SETD1B	72	56.105	Macaca_mulatta
ENSXETG00000003760	setd1b	52	70.575	ENSMICG00000001152	SETD1B	94	56.456	Microcebus_murinus
ENSXETG00000003760	setd1b	58	70.588	ENSMOCG00000012528	-	50	69.401	Microtus_ochrogaster
ENSXETG00000003760	setd1b	55	71.868	MGP_CAROLIEiJ_G0027720	Setd1b	94	56.116	Mus_caroli
ENSXETG00000003760	setd1b	55	71.868	ENSMUSG00000038384	Setd1b	94	56.641	Mus_musculus
ENSXETG00000003760	setd1b	85	58.095	ENSNBRG00000002915	setd1ba	73	56.061	Neolamprologus_brichardi
ENSXETG00000003760	setd1b	64	78.474	ENSNLEG00000001254	SETD1B	91	74.436	Nomascus_leucogenys
ENSXETG00000003760	setd1b	56	70.794	ENSODEG00000010155	SETD1B	79	56.860	Octodon_degus
ENSXETG00000003760	setd1b	70	72.662	ENSOCUG00000017708	SETD1B	73	53.936	Oryctolagus_cuniculus
ENSXETG00000003760	setd1b	82	58.692	ENSORLG00000008435	setd1ba	61	46.604	Oryzias_latipes
ENSXETG00000003760	setd1b	88	58.533	ENSORLG00020017079	setd1ba	96	53.172	Oryzias_latipes_hni
ENSXETG00000003760	setd1b	85	58.240	ENSOMEG00000002270	setd1ba	61	48.914	Oryzias_melastigma
ENSXETG00000003760	setd1b	82	56.369	ENSPMGG00000011527	setd1ba	86	53.185	Periophthalmus_magnuspinnatus
ENSXETG00000003760	setd1b	54	70.588	ENSPEMG00000024243	-	95	51.046	Peromyscus_maniculatus_bairdii
ENSXETG00000003760	setd1b	91	53.752	ENSPFOG00000019768	setd1ba	96	55.422	Poecilia_formosa
ENSXETG00000003760	setd1b	85	57.528	ENSPLAG00000023459	setd1ba	96	55.455	Poecilia_latipinna
ENSXETG00000003760	setd1b	85	53.903	ENSPMEG00000020446	setd1ba	96	55.572	Poecilia_mexicana
ENSXETG00000003760	setd1b	85	57.369	ENSPREG00000011589	setd1ba	96	55.522	Poecilia_reticulata
ENSXETG00000003760	setd1b	56	71.163	ENSPCOG00000003246	SETD1B	94	56.391	Propithecus_coquereli
ENSXETG00000003760	setd1b	54	70.588	ENSPCOG00000020896	SETD1A	58	69.401	Propithecus_coquereli
ENSXETG00000003760	setd1b	85	58.254	ENSPNYG00000009484	setd1ba	69	55.958	Pundamilia_nyererei
ENSXETG00000003760	setd1b	54	78.320	ENSRROG00000011844	SETD1B	96	56.712	Rhinopithecus_roxellana
ENSXETG00000003760	setd1b	51	74.699	ENSSBOG00000033322	SETD1B	74	55.236	Saimiri_boliviensis_boliviensis
ENSXETG00000003760	setd1b	52	64.478	ENSSFOG00015015331	setd1ba	70	55.966	Scleropages_formosus
ENSXETG00000003760	setd1b	59	83.934	ENSSFOG00015004814	SETD1B	96	66.295	Scleropages_formosus
ENSXETG00000003760	setd1b	84	58.228	ENSSDUG00000018313	setd1ba	61	50.762	Seriola_dumerili
ENSXETG00000003760	setd1b	85	58.654	ENSSPAG00000015470	setd1ba	61	48.533	Stegastes_partitus
ENSXETG00000003760	setd1b	54	79.109	ENSSSCG00000009806	SETD1B	66	79.109	Sus_scrofa
ENSXETG00000003760	setd1b	75	78.107	ENSTRUG00000009533	setd1ba	77	78.614	Takifugu_rubripes
ENSXETG00000003760	setd1b	66	70.465	ENSUAMG00000008729	SETD1B	96	54.576	Ursus_americanus
ENSXETG00000003760	setd1b	89	53.008	ENSXCOG00000004451	setd1ba	95	55.958	Xiphophorus_couchianus