EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXETG00000003838 (Gene tree)
Gene ID: -
Gene Symbol: matr3
Alias: -
Full Name: Xenopus tropicalis matrin 3 (matr3)%2C mRNA.
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Minus strand
Length: 32433 bases
Position: chrGL172701.1:378523-410955
Accession: NM_001006791
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000008341	RRM_5	PF13893.6	3.7e-09	1	2
ENSXETP00000008341	RRM_5	PF13893.6	3.7e-09	2	2
ENSXETP00000061804	RRM_5	PF13893.6	4.2e-09	1	2
ENSXETP00000061804	RRM_5	PF13893.6	4.2e-09	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000008341	-	3147	XM_018092034	ENSXETP00000008341	850 (aa)	XP_017947523	Q6DFS8
ENSXETT00000066310	-	2927	-	ENSXETP00000061804	893 (aa)	-	F6QGT3

Gene Model

Click here to download ENSXETG00000003838's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000003838's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000003838	matr3	100	52.188	ENSG00000015479	MATR3	100	74.590	Homo_sapiens
ENSXETG00000003838	matr3	99	54.422	ENSAMEG00000011347	-	100	55.292	Ailuropoda_melanoleuca
ENSXETG00000003838	matr3	100	53.198	ENSAPLG00000008118	-	100	53.583	Anas_platyrhynchos
ENSXETG00000003838	matr3	99	53.534	ENSACAG00000016233	-	97	54.199	Anolis_carolinensis
ENSXETG00000003838	matr3	99	54.913	ENSANAG00000022951	-	98	56.022	Aotus_nancymaae
ENSXETG00000003838	matr3	61	46.797	ENSANAG00000024654	-	90	47.153	Aotus_nancymaae
ENSXETG00000003838	matr3	71	38.624	ENSAMXG00000010685	matr3l1.1	81	41.489	Astyanax_mexicanus
ENSXETG00000003838	matr3	82	54.412	ENSAMXG00000010681	matr3l1.1	85	55.556	Astyanax_mexicanus
ENSXETG00000003838	matr3	94	53.563	ENSBTAG00000006756	MATR3	99	54.315	Bos_taurus
ENSXETG00000003838	matr3	100	54.783	ENSCJAG00000006888	-	100	55.423	Callithrix_jacchus
ENSXETG00000003838	matr3	100	53.217	ENSCAFG00000001345	MATR3	100	53.905	Canis_familiaris
ENSXETG00000003838	matr3	99	54.754	ENSCAFG00020010504	-	98	56.913	Canis_lupus_dingo
ENSXETG00000003838	matr3	100	51.751	ENSCHIG00000025746	-	80	59.424	Capra_hircus
ENSXETG00000003838	matr3	100	52.188	ENSTSYG00000011028	-	86	59.568	Carlito_syrichta
ENSXETG00000003838	matr3	75	58.993	ENSCPOG00000014076	-	85	57.337	Cavia_porcellus
ENSXETG00000003838	matr3	94	53.988	ENSCCAG00000025074	-	99	54.556	Cebus_capucinus
ENSXETG00000003838	matr3	54	45.946	ENSCLAG00000006418	ZNF638	50	47.541	Chinchilla_lanigera
ENSXETG00000003838	matr3	75	58.705	ENSCLAG00000015998	-	80	59.424	Chinchilla_lanigera
ENSXETG00000003838	matr3	75	59.137	ENSCSAG00000013075	-	100	52.890	Chlorocebus_sabaeus
ENSXETG00000003838	matr3	100	54.497	ENSCPBG00000006303	-	100	54.274	Chrysemys_picta_bellii
ENSXETG00000003838	matr3	100	55.109	ENSCANG00000028224	-	100	55.640	Colobus_angolensis_palliatus
ENSXETG00000003838	matr3	89	58.849	ENSCGRG00001020227	Matr3	100	51.233	Cricetulus_griseus_chok1gshd
ENSXETG00000003838	matr3	74	50.794	ENSCGRG00000008044	Zfp638	51	49.180	Cricetulus_griseus_crigri
ENSXETG00000003838	matr3	89	58.742	ENSCGRG00000011298	Matr3	100	51.125	Cricetulus_griseus_crigri
ENSXETG00000003838	matr3	87	39.655	ENSCSEG00000012682	matr3l1.1	88	42.697	Cynoglossus_semilaevis
ENSXETG00000003838	matr3	82	51.562	ENSCVAG00000005337	matr3l1.1	90	55.769	Cyprinodon_variegatus
ENSXETG00000003838	matr3	100	54.477	ENSDNOG00000037723	-	100	55.135	Dasypus_novemcinctus
ENSXETG00000003838	matr3	100	51.860	ENSEASG00005020857	-	80	59.424	Equus_asinus_asinus
ENSXETG00000003838	matr3	100	51.860	ENSECAG00000012882	MATR3	80	59.424	Equus_caballus
ENSXETG00000003838	matr3	75	58.333	ENSELUG00000021848	matr3l1.1	92	59.615	Esox_lucius
ENSXETG00000003838	matr3	77	65.455	ENSELUG00000021651	si:ch211-271b14.1	87	65.455	Esox_lucius
ENSXETG00000003838	matr3	100	51.860	ENSFCAG00000021911	-	100	52.603	Felis_catus
ENSXETG00000003838	matr3	100	52.575	ENSFALG00000003071	-	100	52.784	Ficedula_albicollis
ENSXETG00000003838	matr3	100	51.422	ENSFDAG00000017675	-	100	52.013	Fukomys_damarensis
ENSXETG00000003838	matr3	100	54.019	ENSGALG00000002478	MATR3	100	53.498	Gallus_gallus
ENSXETG00000003838	matr3	100	54.497	ENSGAGG00000011386	-	100	54.274	Gopherus_agassizii
ENSXETG00000003838	matr3	100	55.109	ENSGGOG00000007308	-	100	55.640	Gorilla_gorilla
ENSXETG00000003838	matr3	100	51.860	ENSHGLG00000004673	MATR3	80	59.568	Heterocephalus_glaber_female
ENSXETG00000003838	matr3	67	49.126	ENSHGLG00100006442	-	67	60.112	Heterocephalus_glaber_male
ENSXETG00000003838	matr3	82	49.180	ENSHCOG00000013223	matr3l1.1	77	39.759	Hippocampus_comes
ENSXETG00000003838	matr3	63	66.667	ENSIPUG00000020686	MATR3	93	66.071	Ictalurus_punctatus
ENSXETG00000003838	matr3	100	51.860	ENSSTOG00000014746	-	100	52.557	Ictidomys_tridecemlineatus
ENSXETG00000003838	matr3	89	58.849	ENSJJAG00000021710	-	100	51.502	Jaculus_jaculus
ENSXETG00000003838	matr3	99	48.239	ENSLACG00000006743	-	99	48.507	Latimeria_chalumnae
ENSXETG00000003838	matr3	100	55.109	ENSMFAG00000000634	-	100	55.640	Macaca_fascicularis
ENSXETG00000003838	matr3	100	55.109	ENSMMUG00000016741	MATR3	100	55.640	Macaca_mulatta
ENSXETG00000003838	matr3	59	59.649	ENSMMUG00000015963	-	99	59.766	Macaca_mulatta
ENSXETG00000003838	matr3	99	54.407	ENSMNEG00000042856	-	100	54.881	Macaca_nemestrina
ENSXETG00000003838	matr3	99	54.407	ENSMLEG00000041178	-	100	54.881	Mandrillus_leucophaeus
ENSXETG00000003838	matr3	66	57.143	ENSMAMG00000013840	matr3l1.1	97	40.625	Mastacembelus_armatus
ENSXETG00000003838	matr3	100	54.555	ENSMGAG00000001331	-	100	52.966	Meleagris_gallopavo
ENSXETG00000003838	matr3	89	58.849	ENSMAUG00000011647	Matr3	100	52.402	Mesocricetus_auratus
ENSXETG00000003838	matr3	72	50.794	ENSMAUG00000009740	Zfp638	52	49.180	Mesocricetus_auratus
ENSXETG00000003838	matr3	71	48.849	ENSMICG00000012438	-	76	54.875	Microcebus_murinus
ENSXETG00000003838	matr3	100	51.860	ENSMOCG00000015711	Matr3	100	52.563	Microtus_ochrogaster
ENSXETG00000003838	matr3	76	50.794	ENSMOCG00000017661	Zfp638	55	49.180	Microtus_ochrogaster
ENSXETG00000003838	matr3	100	53.282	ENSMODG00000011925	-	99	53.552	Monodelphis_domestica
ENSXETG00000003838	matr3	100	51.641	MGP_CAROLIEiJ_G0022108	Matr3	100	52.563	Mus_caroli
ENSXETG00000003838	matr3	100	51.641	ENSMUSG00000037236	Matr3	100	52.563	Mus_musculus
ENSXETG00000003838	matr3	100	51.641	MGP_PahariEiJ_G0018842	Matr3	100	52.454	Mus_pahari
ENSXETG00000003838	matr3	75	58.561	MGP_SPRETEiJ_G0023020	Matr3	85	57.201	Mus_spretus
ENSXETG00000003838	matr3	100	52.654	ENSMPUG00000009297	-	100	53.780	Mustela_putorius_furo
ENSXETG00000003838	matr3	100	51.528	ENSMLUG00000005798	-	99	52.165	Myotis_lucifugus
ENSXETG00000003838	matr3	75	58.417	ENSNGAG00000017452	Matr3	80	59.137	Nannospalax_galili
ENSXETG00000003838	matr3	94	54.104	ENSNLEG00000009093	-	99	54.671	Nomascus_leucogenys
ENSXETG00000003838	matr3	99	53.979	ENSOPRG00000016511	-	99	53.821	Ochotona_princeps
ENSXETG00000003838	matr3	99	51.917	ENSODEG00000003015	-	99	52.402	Octodon_degus
ENSXETG00000003838	matr3	100	51.860	ENSOCUG00000026311	MATR3	80	59.568	Oryctolagus_cuniculus
ENSXETG00000003838	matr3	60	59.259	ENSORLG00020009362	matr3l1.1	89	61.224	Oryzias_latipes_hni
ENSXETG00000003838	matr3	60	57.407	ENSORLG00015018551	matr3l1.1	79	59.184	Oryzias_latipes_hsok
ENSXETG00000003838	matr3	67	38.393	ENSOMEG00000022287	matr3l1.1	79	59.184	Oryzias_melastigma
ENSXETG00000003838	matr3	75	58.849	ENSOGAG00000010607	-	100	52.672	Otolemur_garnettii
ENSXETG00000003838	matr3	100	51.751	ENSOARG00000016931	-	80	59.424	Ovis_aries
ENSXETG00000003838	matr3	100	55.109	ENSPPAG00000001418	-	100	55.640	Pan_paniscus
ENSXETG00000003838	matr3	50	81.481	ENSPPAG00000026720	-	99	49.273	Pan_paniscus
ENSXETG00000003838	matr3	100	51.751	ENSPPRG00000008004	-	100	52.495	Panthera_pardus
ENSXETG00000003838	matr3	99	51.728	ENSPTIG00000010711	-	100	51.977	Panthera_tigris_altaica
ENSXETG00000003838	matr3	100	55.109	ENSPTRG00000017294	MATR3	100	55.640	Pan_troglodytes
ENSXETG00000003838	matr3	100	55.109	ENSPANG00000012018	-	100	55.640	Papio_anubis
ENSXETG00000003838	matr3	82	66.071	ENSPKIG00000000333	matr3l1.1	91	68.627	Paramormyrops_kingsleyae
ENSXETG00000003838	matr3	100	54.225	ENSPSIG00000014598	-	100	54.380	Pelodiscus_sinensis
ENSXETG00000003838	matr3	75	58.849	ENSPEMG00000020679	Matr3	80	59.568	Peromyscus_maniculatus_bairdii
ENSXETG00000003838	matr3	100	55.109	ENSPPYG00000015835	-	100	55.640	Pongo_abelii
ENSXETG00000003838	matr3	100	51.969	ENSPCOG00000025718	-	100	52.890	Propithecus_coquereli
ENSXETG00000003838	matr3	98	55.531	ENSPVAG00000015431	-	100	56.071	Pteropus_vampyrus
ENSXETG00000003838	matr3	53	37.143	ENSPNYG00000015855	-	98	40.777	Pundamilia_nyererei
ENSXETG00000003838	matr3	75	58.561	ENSRNOG00000019875	Matr3	100	52.678	Rattus_norvegicus
ENSXETG00000003838	matr3	64	47.297	ENSRBIG00000029826	ZNF638	78	30.682	Rhinopithecus_bieti
ENSXETG00000003838	matr3	64	47.297	ENSRROG00000045431	ZNF638	78	31.250	Rhinopithecus_roxellana
ENSXETG00000003838	matr3	75	57.554	ENSRROG00000043949	-	100	51.690	Rhinopithecus_roxellana
ENSXETG00000003838	matr3	100	54.348	ENSRROG00000039415	-	100	54.881	Rhinopithecus_roxellana
ENSXETG00000003838	matr3	99	54.745	ENSSBOG00000030159	-	98	55.863	Saimiri_boliviensis_boliviensis
ENSXETG00000003838	matr3	100	53.173	ENSSHAG00000010331	-	99	53.443	Sarcophilus_harrisii
ENSXETG00000003838	matr3	62	48.438	ENSSDUG00000015369	matr3l1.1	98	57.143	Seriola_dumerili
ENSXETG00000003838	matr3	99	52.104	ENSSPUG00000019236	-	99	53.905	Sphenodon_punctatus
ENSXETG00000003838	matr3	100	52.438	ENSSSCG00000014343	-	100	53.629	Sus_scrofa
ENSXETG00000003838	matr3	99	53.912	ENSTGUG00000014568	MATR3	99	53.921	Taeniopygia_guttata
ENSXETG00000003838	matr3	81	55.102	ENSTNIG00000003166	matr3l1.1	90	56.000	Tetraodon_nigroviridis
ENSXETG00000003838	matr3	75	58.849	ENSUAMG00000000097	-	98	56.913	Ursus_americanus
ENSXETG00000003838	matr3	100	52.928	ENSUMAG00000015808	-	100	53.622	Ursus_maritimus
ENSXETG00000003838	matr3	70	45.946	ENSUMAG00000021680	ZNF638	50	50.000	Ursus_maritimus
ENSXETG00000003838	matr3	100	54.908	ENSVPAG00000006337	-	100	55.448	Vicugna_pacos
ENSXETG00000003838	matr3	100	51.751	ENSVVUG00000020287	-	100	52.495	Vulpes_vulpes
ENSXETG00000003838	matr3	68	61.905	ENSXMAG00000014107	-	68	62.791	Xiphophorus_maculatus