EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXETG00000004449 (Gene tree)
Gene ID: -
Gene Symbol: rab23
Alias: -
Full Name: RAB23%2C member RAS oncogene family
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Minus strand
Length: 12142 bases
Position: chrGL172837.1:9777-21918
Accession: XB-GENE-492626
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000009674	MMR_HSR1	PF01926.23	5.8e-06	1	1
ENSXETP00000060800	MMR_HSR1	PF01926.23	7.3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000060689	-	717	-	ENSXETP00000060800	238 (aa)	-	F6TPJ8
ENSXETT00000009674	-	717	-	ENSXETP00000009674	238 (aa)	-	F7E6E7

Gene Model

Click here to download ENSXETG00000004449's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000004449's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXETG00000004449	rab23	65	35.443	ENSXETG00000032443	RAB39B	69	35.374
ENSXETG00000004449	rab23	66	33.129	ENSXETG00000016920	rab33b	66	32.237
ENSXETG00000004449	rab23	69	31.928	ENSXETG00000008055	rab3b	75	32.653
ENSXETG00000004449	rab23	69	30.994	ENSXETG00000018183	rab33a	70	30.464
ENSXETG00000004449	rab23	66	37.975	ENSXETG00000023200	rab6a	77	37.671
ENSXETG00000004449	rab23	65	32.075	ENSXETG00000013345	rab9a	73	31.293
ENSXETG00000004449	rab23	69	31.548	ENSXETG00000005944	rab7b	76	32.026
ENSXETG00000004449	rab23	72	33.146	ENSXETG00000014011	rab1a	76	34.177
ENSXETG00000004449	rab23	64	34.783	ENSXETG00000014257	mgc75872	73	34.899
ENSXETG00000004449	rab23	79	33.161	ENSXETG00000026943	rab35	86	34.104
ENSXETG00000004449	rab23	79	34.171	ENSXETG00000019257	rab34	72	32.447
ENSXETG00000004449	rab23	71	32.948	ENSXETG00000004556	rab18	98	32.843
ENSXETG00000004449	rab23	66	36.025	ENSXETG00000018133	rab9b	73	35.374
ENSXETG00000004449	rab23	68	34.969	ENSXETG00000021890	rab11b.2	65	35.417
ENSXETG00000004449	rab23	72	34.857	ENSXETG00000020404	rab25	81	34.857
ENSXETG00000004449	rab23	71	32.558	ENSXETG00000002201	rab15	74	33.121
ENSXETG00000004449	rab23	57	37.589	ENSXETG00000020729	rab13	86	37.589
ENSXETG00000004449	rab23	80	34.715	ENSXETG00000011370	rab35	85	35.465
ENSXETG00000004449	rab23	59	31.250	ENSXETG00000007760	rap2b	78	31.250
ENSXETG00000004449	rab23	64	36.364	ENSXETG00000025484	rab11b.1	65	35.417
ENSXETG00000004449	rab23	73	35.429	ENSXETG00000002305	rab5a	75	34.356
ENSXETG00000004449	rab23	66	37.580	ENSXETG00000030938	rab41	69	36.986
ENSXETG00000004449	rab23	70	33.908	ENSXETG00000016176	rab7a	75	33.758
ENSXETG00000004449	rab23	77	34.783	ENSXETG00000013633	rab30	90	34.783
ENSXETG00000004449	rab23	76	32.796	ENSXETG00000020622	rab39a	84	32.759
ENSXETG00000004449	rab23	68	33.333	ENSXETG00000006639	rab11a	72	32.911
ENSXETG00000004449	rab23	70	34.911	ENSXETG00000017184	rab2b	72	35.032

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000004449	rab23	99	81.435	ENSG00000112210	RAB23	99	81.435	Homo_sapiens
ENSXETG00000004449	rab23	100	78.243	ENSAPOG00000008892	rab23	100	78.243	Acanthochromis_polyacanthus
ENSXETG00000004449	rab23	99	81.013	ENSAMEG00000006825	RAB23	99	81.013	Ailuropoda_melanoleuca
ENSXETG00000004449	rab23	100	65.966	ENSACIG00000020496	rab23	100	65.966	Amphilophus_citrinellus
ENSXETG00000004449	rab23	100	78.243	ENSAOCG00000004234	rab23	100	78.243	Amphiprion_ocellaris
ENSXETG00000004449	rab23	100	78.243	ENSAPEG00000019758	rab23	100	78.243	Amphiprion_percula
ENSXETG00000004449	rab23	100	78.151	ENSATEG00000020913	rab23	100	78.151	Anabas_testudineus
ENSXETG00000004449	rab23	74	85.311	ENSAPLG00000003715	RAB23	100	85.311	Anas_platyrhynchos
ENSXETG00000004449	rab23	99	81.857	ENSACAG00000006656	RAB23	99	81.857	Anolis_carolinensis
ENSXETG00000004449	rab23	99	81.013	ENSANAG00000027052	-	99	81.013	Aotus_nancymaae
ENSXETG00000004449	rab23	100	78.571	ENSACLG00000002819	rab23	100	78.571	Astatotilapia_calliptera
ENSXETG00000004449	rab23	100	78.571	ENSAMXG00000014960	rab23	100	78.571	Astyanax_mexicanus
ENSXETG00000004449	rab23	99	79.325	ENSBTAG00000005362	RAB23	99	79.325	Bos_taurus
ENSXETG00000004449	rab23	99	81.013	ENSCJAG00000010247	RAB23	99	81.013	Callithrix_jacchus
ENSXETG00000004449	rab23	99	81.013	ENSCAFG00000002459	RAB23	99	81.013	Canis_familiaris
ENSXETG00000004449	rab23	99	81.013	ENSCAFG00020015900	RAB23	99	81.013	Canis_lupus_dingo
ENSXETG00000004449	rab23	99	79.325	ENSCHIG00000009815	RAB23	99	79.325	Capra_hircus
ENSXETG00000004449	rab23	100	81.513	ENSTSYG00000029126	RAB23	100	81.513	Carlito_syrichta
ENSXETG00000004449	rab23	99	77.637	ENSCPOG00000030218	RAB23	99	77.637	Cavia_porcellus
ENSXETG00000004449	rab23	99	80.591	ENSCCAG00000020364	RAB23	99	80.591	Cebus_capucinus
ENSXETG00000004449	rab23	99	81.435	ENSCATG00000027876	RAB23	99	81.435	Cercocebus_atys
ENSXETG00000004449	rab23	99	79.325	ENSCLAG00000000797	RAB23	99	79.325	Chinchilla_lanigera
ENSXETG00000004449	rab23	99	81.013	ENSCSAG00000013438	RAB23	99	81.013	Chlorocebus_sabaeus
ENSXETG00000004449	rab23	99	83.544	ENSCPBG00000022640	RAB23	99	83.544	Chrysemys_picta_bellii
ENSXETG00000004449	rab23	100	59.671	ENSCING00000001155	-	99	60.744	Ciona_intestinalis
ENSXETG00000004449	rab23	99	58.750	ENSCSAVG00000001356	-	99	61.088	Ciona_savignyi
ENSXETG00000004449	rab23	99	81.013	ENSCANG00000031065	RAB23	99	81.013	Colobus_angolensis_palliatus
ENSXETG00000004449	rab23	99	79.747	ENSCGRG00001008994	Rab23	99	79.747	Cricetulus_griseus_chok1gshd
ENSXETG00000004449	rab23	99	78.814	ENSCGRG00000013630	Rab23	99	78.814	Cricetulus_griseus_crigri
ENSXETG00000004449	rab23	100	66.807	ENSCSEG00000010565	rab23	100	66.807	Cynoglossus_semilaevis
ENSXETG00000004449	rab23	100	78.571	ENSCVAG00000020501	rab23	100	78.571	Cyprinodon_variegatus
ENSXETG00000004449	rab23	100	77.731	ENSDARG00000004151	rab23	100	77.731	Danio_rerio
ENSXETG00000004449	rab23	99	78.059	ENSDNOG00000015501	RAB23	99	78.059	Dasypus_novemcinctus
ENSXETG00000004449	rab23	100	79.412	ENSDORG00000028344	Rab23	100	79.412	Dipodomys_ordii
ENSXETG00000004449	rab23	94	55.157	FBgn0037364	Rab23	65	65.318	Drosophila_melanogaster
ENSXETG00000004449	rab23	96	60.944	ENSEBUG00000010861	-	91	60.944	Eptatretus_burgeri
ENSXETG00000004449	rab23	99	80.591	ENSEASG00005003529	RAB23	99	80.591	Equus_asinus_asinus
ENSXETG00000004449	rab23	99	81.013	ENSECAG00000013427	RAB23	99	81.013	Equus_caballus
ENSXETG00000004449	rab23	100	78.151	ENSEEUG00000015045	RAB23	100	78.151	Erinaceus_europaeus
ENSXETG00000004449	rab23	99	77.447	ENSELUG00000020788	rab23	99	78.298	Esox_lucius
ENSXETG00000004449	rab23	99	81.857	ENSFCAG00000044358	RAB23	99	81.857	Felis_catus
ENSXETG00000004449	rab23	99	81.013	ENSFALG00000001708	RAB23	99	81.013	Ficedula_albicollis
ENSXETG00000004449	rab23	99	79.747	ENSFDAG00000014834	RAB23	99	79.747	Fukomys_damarensis
ENSXETG00000004449	rab23	100	76.891	ENSFHEG00000023069	rab23	100	77.731	Fundulus_heteroclitus
ENSXETG00000004449	rab23	100	77.311	ENSGMOG00000005102	rab23	100	77.311	Gadus_morhua
ENSXETG00000004449	rab23	99	81.013	ENSGALG00000016279	RAB23	99	81.013	Gallus_gallus
ENSXETG00000004449	rab23	99	76.793	ENSGAFG00000007684	rab23	99	76.793	Gambusia_affinis
ENSXETG00000004449	rab23	100	76.471	ENSGACG00000006151	rab23	100	76.471	Gasterosteus_aculeatus
ENSXETG00000004449	rab23	99	83.966	ENSGAGG00000012709	RAB23	99	83.966	Gopherus_agassizii
ENSXETG00000004449	rab23	100	67.227	ENSHBUG00000007966	rab23	100	67.227	Haplochromis_burtoni
ENSXETG00000004449	rab23	99	80.169	ENSHGLG00000013030	-	99	80.169	Heterocephalus_glaber_female
ENSXETG00000004449	rab23	99	69.295	ENSHGLG00000009371	-	99	68.465	Heterocephalus_glaber_female
ENSXETG00000004449	rab23	99	80.169	ENSHGLG00100005945	-	99	80.169	Heterocephalus_glaber_male
ENSXETG00000004449	rab23	99	69.295	ENSHGLG00100017177	-	99	68.465	Heterocephalus_glaber_male
ENSXETG00000004449	rab23	100	63.866	ENSHCOG00000013919	rab23	100	65.126	Hippocampus_comes
ENSXETG00000004449	rab23	100	68.067	ENSIPUG00000016494	rab23	100	68.067	Ictalurus_punctatus
ENSXETG00000004449	rab23	99	80.591	ENSSTOG00000010962	RAB23	99	80.591	Ictidomys_tridecemlineatus
ENSXETG00000004449	rab23	99	80.591	ENSJJAG00000020094	Rab23	99	80.591	Jaculus_jaculus
ENSXETG00000004449	rab23	100	78.151	ENSKMAG00000018270	rab23	100	78.151	Kryptolebias_marmoratus
ENSXETG00000004449	rab23	100	77.311	ENSLBEG00000013176	rab23	100	77.311	Labrus_bergylta
ENSXETG00000004449	rab23	100	83.613	ENSLACG00000004025	RAB23	100	83.613	Latimeria_chalumnae
ENSXETG00000004449	rab23	100	80.913	ENSLOCG00000016999	rab23	100	80.913	Lepisosteus_oculatus
ENSXETG00000004449	rab23	99	81.857	ENSLAFG00000007209	RAB23	99	81.857	Loxodonta_africana
ENSXETG00000004449	rab23	99	81.435	ENSMFAG00000032369	RAB23	99	81.435	Macaca_fascicularis
ENSXETG00000004449	rab23	99	81.435	ENSMMUG00000018003	RAB23	99	81.435	Macaca_mulatta
ENSXETG00000004449	rab23	99	81.435	ENSMNEG00000037012	RAB23	99	81.435	Macaca_nemestrina
ENSXETG00000004449	rab23	99	81.435	ENSMLEG00000042429	RAB23	99	81.435	Mandrillus_leucophaeus
ENSXETG00000004449	rab23	100	79.412	ENSMAMG00000015456	rab23	100	79.412	Mastacembelus_armatus
ENSXETG00000004449	rab23	100	78.571	ENSMZEG00005005441	rab23	100	78.571	Maylandia_zebra
ENSXETG00000004449	rab23	99	80.591	ENSMGAG00000013882	RAB23	99	80.591	Meleagris_gallopavo
ENSXETG00000004449	rab23	99	81.857	ENSMICG00000014037	RAB23	99	81.857	Microcebus_murinus
ENSXETG00000004449	rab23	99	79.747	ENSMOCG00000000444	Rab23	99	79.747	Microtus_ochrogaster
ENSXETG00000004449	rab23	100	67.227	ENSMMOG00000007703	rab23	100	67.227	Mola_mola
ENSXETG00000004449	rab23	99	82.278	ENSMODG00000018720	RAB23	99	82.278	Monodelphis_domestica
ENSXETG00000004449	rab23	100	78.992	ENSMALG00000002136	rab23	100	78.992	Monopterus_albus
ENSXETG00000004449	rab23	99	79.747	MGP_CAROLIEiJ_G0014015	Rab23	99	79.747	Mus_caroli
ENSXETG00000004449	rab23	99	78.903	ENSMUSG00000004768	Rab23	99	78.903	Mus_musculus
ENSXETG00000004449	rab23	99	79.325	MGP_PahariEiJ_G0027261	Rab23	99	79.325	Mus_pahari
ENSXETG00000004449	rab23	99	79.325	MGP_SPRETEiJ_G0014820	Rab23	99	79.325	Mus_spretus
ENSXETG00000004449	rab23	99	73.950	ENSMPUG00000002642	RAB23	99	73.950	Mustela_putorius_furo
ENSXETG00000004449	rab23	99	81.435	ENSMLUG00000004058	RAB23	99	81.435	Myotis_lucifugus
ENSXETG00000004449	rab23	99	80.169	ENSNGAG00000018038	Rab23	99	80.169	Nannospalax_galili
ENSXETG00000004449	rab23	100	78.571	ENSNBRG00000013691	rab23	100	78.571	Neolamprologus_brichardi
ENSXETG00000004449	rab23	99	81.435	ENSNLEG00000027830	RAB23	99	81.435	Nomascus_leucogenys
ENSXETG00000004449	rab23	99	78.903	ENSODEG00000016056	RAB23	99	78.903	Octodon_degus
ENSXETG00000004449	rab23	100	77.824	ENSONIG00000009749	rab23	100	77.824	Oreochromis_niloticus
ENSXETG00000004449	rab23	99	85.654	ENSOANG00000001398	RAB23	99	85.654	Ornithorhynchus_anatinus
ENSXETG00000004449	rab23	99	81.435	ENSOCUG00000004816	RAB23	99	81.435	Oryctolagus_cuniculus
ENSXETG00000004449	rab23	100	78.571	ENSORLG00000010115	rab23	100	78.571	Oryzias_latipes
ENSXETG00000004449	rab23	100	78.571	ENSORLG00020020220	rab23	100	78.571	Oryzias_latipes_hni
ENSXETG00000004449	rab23	100	77.731	ENSORLG00015004033	rab23	100	77.731	Oryzias_latipes_hsok
ENSXETG00000004449	rab23	100	78.151	ENSOMEG00000001706	rab23	100	78.151	Oryzias_melastigma
ENSXETG00000004449	rab23	99	81.857	ENSOGAG00000005675	RAB23	99	81.857	Otolemur_garnettii
ENSXETG00000004449	rab23	99	79.325	ENSOARG00000005749	RAB23	99	79.325	Ovis_aries
ENSXETG00000004449	rab23	99	81.013	ENSPPAG00000010023	RAB23	99	81.013	Pan_paniscus
ENSXETG00000004449	rab23	99	81.857	ENSPPRG00000012453	RAB23	99	81.857	Panthera_pardus
ENSXETG00000004449	rab23	99	81.857	ENSPTIG00000009435	RAB23	99	81.857	Panthera_tigris_altaica
ENSXETG00000004449	rab23	99	81.435	ENSPTRG00000043341	RAB23	99	81.435	Pan_troglodytes
ENSXETG00000004449	rab23	99	81.435	ENSPANG00000017772	RAB23	99	81.435	Papio_anubis
ENSXETG00000004449	rab23	74	84.659	ENSPKIG00000024310	rab23	87	84.659	Paramormyrops_kingsleyae
ENSXETG00000004449	rab23	99	83.122	ENSPSIG00000015579	RAB23	99	83.122	Pelodiscus_sinensis
ENSXETG00000004449	rab23	99	65.401	ENSPMGG00000008577	rab23	99	65.401	Periophthalmus_magnuspinnatus
ENSXETG00000004449	rab23	99	78.903	ENSPEMG00000023271	Rab23	99	78.903	Peromyscus_maniculatus_bairdii
ENSXETG00000004449	rab23	100	63.445	ENSPMAG00000006835	-	100	63.445	Petromyzon_marinus
ENSXETG00000004449	rab23	99	81.857	ENSPCIG00000007267	RAB23	99	81.857	Phascolarctos_cinereus
ENSXETG00000004449	rab23	100	76.471	ENSPFOG00000011493	rab23	100	76.471	Poecilia_formosa
ENSXETG00000004449	rab23	100	76.050	ENSPLAG00000011697	rab23	100	76.050	Poecilia_latipinna
ENSXETG00000004449	rab23	100	76.471	ENSPMEG00000017300	rab23	100	76.471	Poecilia_mexicana
ENSXETG00000004449	rab23	100	65.966	ENSPREG00000022509	rab23	100	65.966	Poecilia_reticulata
ENSXETG00000004449	rab23	99	81.435	ENSPPYG00000016739	RAB23	99	81.435	Pongo_abelii
ENSXETG00000004449	rab23	99	81.435	ENSPCOG00000028471	RAB23	99	81.435	Propithecus_coquereli
ENSXETG00000004449	rab23	99	72.574	ENSPVAG00000017693	RAB23	99	72.574	Pteropus_vampyrus
ENSXETG00000004449	rab23	100	78.571	ENSPNYG00000019639	rab23	100	78.571	Pundamilia_nyererei
ENSXETG00000004449	rab23	100	79.412	ENSPNAG00000024728	rab23	100	79.412	Pygocentrus_nattereri
ENSXETG00000004449	rab23	99	79.325	ENSRNOG00000012629	Rab23	99	79.325	Rattus_norvegicus
ENSXETG00000004449	rab23	99	76.860	ENSRBIG00000030547	RAB23	99	76.860	Rhinopithecus_bieti
ENSXETG00000004449	rab23	99	81.435	ENSRROG00000035920	RAB23	99	81.435	Rhinopithecus_roxellana
ENSXETG00000004449	rab23	99	80.169	ENSSBOG00000033237	RAB23	99	80.169	Saimiri_boliviensis_boliviensis
ENSXETG00000004449	rab23	99	81.013	ENSSHAG00000006379	RAB23	99	81.013	Sarcophilus_harrisii
ENSXETG00000004449	rab23	100	78.571	ENSSFOG00015012604	rab23	100	78.571	Scleropages_formosus
ENSXETG00000004449	rab23	100	77.731	ENSSMAG00000006341	rab23	100	77.731	Scophthalmus_maximus
ENSXETG00000004449	rab23	100	78.151	ENSSDUG00000023508	rab23	100	78.151	Seriola_dumerili
ENSXETG00000004449	rab23	100	78.151	ENSSLDG00000000287	rab23	100	78.151	Seriola_lalandi_dorsalis
ENSXETG00000004449	rab23	99	80.169	ENSSARG00000013689	RAB23	99	80.169	Sorex_araneus
ENSXETG00000004449	rab23	99	83.966	ENSSPUG00000006274	RAB23	99	83.966	Sphenodon_punctatus
ENSXETG00000004449	rab23	100	78.243	ENSSPAG00000010373	rab23	100	78.243	Stegastes_partitus
ENSXETG00000004449	rab23	99	79.325	ENSSSCG00000029539	RAB23	99	79.325	Sus_scrofa
ENSXETG00000004449	rab23	99	81.435	ENSTGUG00000012794	RAB23	99	81.435	Taeniopygia_guttata
ENSXETG00000004449	rab23	100	77.731	ENSTRUG00000015697	rab23	100	77.731	Takifugu_rubripes
ENSXETG00000004449	rab23	100	79.412	ENSTNIG00000016575	rab23	100	79.412	Tetraodon_nigroviridis
ENSXETG00000004449	rab23	99	81.435	ENSUAMG00000013367	RAB23	99	81.435	Ursus_americanus
ENSXETG00000004449	rab23	99	81.435	ENSUMAG00000018629	RAB23	99	81.435	Ursus_maritimus
ENSXETG00000004449	rab23	80	64.921	ENSVPAG00000006805	RAB23	100	64.921	Vicugna_pacos
ENSXETG00000004449	rab23	99	81.013	ENSVVUG00000008535	RAB23	99	81.013	Vulpes_vulpes
ENSXETG00000004449	rab23	99	76.371	ENSXCOG00000011864	rab23	99	76.371	Xiphophorus_couchianus
ENSXETG00000004449	rab23	99	76.793	ENSXMAG00000009387	rab23	99	76.793	Xiphophorus_maculatus