EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXETG00000004530 (Gene tree)
Gene ID: -
Gene Symbol: rif1
Alias: -
Full Name: replication timing regulatory factor 1
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Minus strand
Length: 18289 bases
Position: chrGL172863.1:1013956-1032244
Accession: XB-GENE-920162
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000009823	Rif1_N	PF12231.8	1.6e-58	1	2
ENSXETP00000009823	Rif1_N	PF12231.8	1.6e-58	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000009823	-	6948	-	ENSXETP00000009823	2315 (aa)	-	F7EDU1

Gene Model

Click here to download ENSXETG00000004530's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000004530's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000004530	rif1	71	45.355	ENSG00000080345	RIF1	97	58.575	Homo_sapiens
ENSXETG00000004530	rif1	77	46.746	ENSAPOG00000011073	rif1	76	46.882	Acanthochromis_polyacanthus
ENSXETG00000004530	rif1	70	47.135	ENSAMEG00000008461	RIF1	71	46.670	Ailuropoda_melanoleuca
ENSXETG00000004530	rif1	69	51.118	ENSACIG00000017765	rif1	72	51.118	Amphilophus_citrinellus
ENSXETG00000004530	rif1	70	47.875	ENSAOCG00000017231	rif1	76	47.875	Amphiprion_ocellaris
ENSXETG00000004530	rif1	65	52.713	ENSAPEG00000013228	rif1	66	52.713	Amphiprion_percula
ENSXETG00000004530	rif1	82	48.451	ENSATEG00000022887	rif1	79	48.451	Anabas_testudineus
ENSXETG00000004530	rif1	95	50.588	ENSAPLG00000007092	RIF1	99	50.000	Anas_platyrhynchos
ENSXETG00000004530	rif1	85	55.490	ENSACAG00000003714	RIF1	68	55.490	Anolis_carolinensis
ENSXETG00000004530	rif1	72	54.006	ENSAMXG00000010910	rif1	69	53.116	Astyanax_mexicanus
ENSXETG00000004530	rif1	92	60.177	ENSBTAG00000021020	RIF1	99	60.177	Bos_taurus
ENSXETG00000004530	rif1	87	63.444	ENSCJAG00000003138	RIF1	87	63.444	Callithrix_jacchus
ENSXETG00000004530	rif1	68	60.580	ENSCAFG00000005670	RIF1	56	61.934	Canis_familiaris
ENSXETG00000004530	rif1	53	52.619	ENSCAFG00020016401	RIF1	59	61.934	Canis_lupus_dingo
ENSXETG00000004530	rif1	86	58.470	ENSCHIG00000020327	RIF1	86	58.470	Capra_hircus
ENSXETG00000004530	rif1	84	63.222	ENSTSYG00000008861	RIF1	84	63.222	Carlito_syrichta
ENSXETG00000004530	rif1	70	57.879	ENSCAPG00000008957	RIF1	90	57.879	Cavia_aperea
ENSXETG00000004530	rif1	84	62.424	ENSCPOG00000037898	RIF1	59	62.424	Cavia_porcellus
ENSXETG00000004530	rif1	72	63.746	ENSCCAG00000024760	RIF1	58	63.746	Cebus_capucinus
ENSXETG00000004530	rif1	99	43.920	ENSCATG00000033353	RIF1	99	43.792	Cercocebus_atys
ENSXETG00000004530	rif1	64	47.385	ENSCLAG00000001517	RIF1	81	63.030	Chinchilla_lanigera
ENSXETG00000004530	rif1	99	44.143	ENSCSAG00000016089	RIF1	99	44.016	Chlorocebus_sabaeus
ENSXETG00000004530	rif1	67	42.731	ENSCHOG00000007187	RIF1	81	61.818	Choloepus_hoffmanni
ENSXETG00000004530	rif1	89	62.772	ENSCPBG00000025885	RIF1	95	63.043	Chrysemys_picta_bellii
ENSXETG00000004530	rif1	57	50.035	ENSCANG00000028962	RIF1	99	43.894	Colobus_angolensis_palliatus
ENSXETG00000004530	rif1	73	62.236	ENSCGRG00001024589	Rif1	85	62.236	Cricetulus_griseus_chok1gshd
ENSXETG00000004530	rif1	72	62.236	ENSCGRG00000010713	Rif1	85	62.236	Cricetulus_griseus_crigri
ENSXETG00000004530	rif1	51	48.332	ENSCSEG00000003945	rif1	53	48.379	Cynoglossus_semilaevis
ENSXETG00000004530	rif1	51	46.263	ENSCVAG00000022479	rif1	52	45.972	Cyprinodon_variegatus
ENSXETG00000004530	rif1	62	44.444	ENSDARG00000062650	rif1	65	43.367	Danio_rerio
ENSXETG00000004530	rif1	84	62.579	ENSDNOG00000011194	RIF1	81	62.579	Dasypus_novemcinctus
ENSXETG00000004530	rif1	73	57.357	ENSETEG00000012421	RIF1	71	57.357	Echinops_telfairi
ENSXETG00000004530	rif1	78	64.706	ENSEASG00005023434	RIF1	81	64.706	Equus_asinus_asinus
ENSXETG00000004530	rif1	70	56.952	ENSECAG00000012679	RIF1	84	59.770	Equus_caballus
ENSXETG00000004530	rif1	69	49.858	ENSELUG00000006826	rif1	60	49.288	Esox_lucius
ENSXETG00000004530	rif1	78	59.783	ENSFALG00000013874	RIF1	99	60.054	Ficedula_albicollis
ENSXETG00000004530	rif1	66	62.874	ENSFDAG00000006538	RIF1	70	46.382	Fukomys_damarensis
ENSXETG00000004530	rif1	67	46.640	ENSFHEG00000013721	rif1	78	40.359	Fundulus_heteroclitus
ENSXETG00000004530	rif1	65	44.444	ENSGMOG00000003517	rif1	97	44.444	Gadus_morhua
ENSXETG00000004530	rif1	82	59.946	ENSGALG00000012484	RIF1	99	49.615	Gallus_gallus
ENSXETG00000004530	rif1	78	45.133	ENSGAFG00000017196	rif1	80	50.857	Gambusia_affinis
ENSXETG00000004530	rif1	61	58.140	ENSGACG00000008579	rif1	65	51.550	Gasterosteus_aculeatus
ENSXETG00000004530	rif1	89	62.228	ENSGAGG00000012595	RIF1	99	62.432	Gopherus_agassizii
ENSXETG00000004530	rif1	56	46.774	ENSHBUG00000007125	rif1	59	47.024	Haplochromis_burtoni
ENSXETG00000004530	rif1	65	48.335	ENSHCOG00000015943	rif1	59	48.169	Hippocampus_comes
ENSXETG00000004530	rif1	52	51.086	ENSIPUG00000021703	rif1	55	48.782	Ictalurus_punctatus
ENSXETG00000004530	rif1	84	62.236	ENSSTOG00000020712	RIF1	83	62.236	Ictidomys_tridecemlineatus
ENSXETG00000004530	rif1	70	44.760	ENSJJAG00000023000	Rif1	99	43.422	Jaculus_jaculus
ENSXETG00000004530	rif1	63	42.773	ENSKMAG00000002852	rif1	56	46.040	Kryptolebias_marmoratus
ENSXETG00000004530	rif1	63	54.717	ENSLBEG00000023196	rif1	60	53.169	Labrus_bergylta
ENSXETG00000004530	rif1	93	63.173	ENSLACG00000005425	RIF1	97	63.173	Latimeria_chalumnae
ENSXETG00000004530	rif1	83	54.711	ENSLOCG00000002657	rif1	100	49.492	Lepisosteus_oculatus
ENSXETG00000004530	rif1	99	43.967	ENSMFAG00000032233	RIF1	99	43.878	Macaca_fascicularis
ENSXETG00000004530	rif1	99	43.927	ENSMMUG00000008611	RIF1	99	43.839	Macaca_mulatta
ENSXETG00000004530	rif1	99	43.888	ENSMNEG00000031616	RIF1	99	43.918	Macaca_nemestrina
ENSXETG00000004530	rif1	99	44.099	ENSMLEG00000042945	RIF1	99	43.972	Mandrillus_leucophaeus
ENSXETG00000004530	rif1	72	47.869	ENSMAMG00000001745	rif1	70	47.869	Mastacembelus_armatus
ENSXETG00000004530	rif1	73	47.790	ENSMZEG00005020920	rif1	76	47.644	Maylandia_zebra
ENSXETG00000004530	rif1	85	58.378	ENSMGAG00000012732	RIF1	93	58.649	Meleagris_gallopavo
ENSXETG00000004530	rif1	64	63.025	ENSMAUG00000013158	Rif1	69	61.983	Mesocricetus_auratus
ENSXETG00000004530	rif1	69	46.284	ENSMICG00000046127	RIF1	83	63.722	Microcebus_murinus
ENSXETG00000004530	rif1	63	41.710	ENSMMOG00000006519	rif1	50	47.132	Mola_mola
ENSXETG00000004530	rif1	86	62.874	ENSMODG00000003703	RIF1	75	46.227	Monodelphis_domestica
ENSXETG00000004530	rif1	68	47.326	ENSMALG00000016759	rif1	68	50.903	Monopterus_albus
ENSXETG00000004530	rif1	53	52.529	MGP_CAROLIEiJ_G0023555	Rif1	73	43.851	Mus_caroli
ENSXETG00000004530	rif1	53	49.493	MGP_PahariEiJ_G0025006	Rif1	71	43.191	Mus_pahari
ENSXETG00000004530	rif1	53	52.124	MGP_SPRETEiJ_G0024476	Rif1	71	44.597	Mus_spretus
ENSXETG00000004530	rif1	69	46.406	ENSMPUG00000000371	RIF1	64	62.236	Mustela_putorius_furo
ENSXETG00000004530	rif1	60	45.335	ENSMLUG00000003376	RIF1	53	61.830	Myotis_lucifugus
ENSXETG00000004530	rif1	72	47.849	ENSNBRG00000014257	rif1	58	46.137	Neolamprologus_brichardi
ENSXETG00000004530	rif1	99	42.344	ENSNLEG00000010955	RIF1	99	42.779	Nomascus_leucogenys
ENSXETG00000004530	rif1	70	69.333	ENSMEUG00000007601	-	77	69.333	Notamacropus_eugenii
ENSXETG00000004530	rif1	83	63.030	ENSODEG00000003950	RIF1	59	62.462	Octodon_degus
ENSXETG00000004530	rif1	74	47.415	ENSONIG00000013657	rif1	74	46.109	Oreochromis_niloticus
ENSXETG00000004530	rif1	72	60.949	ENSOANG00000006078	-	71	60.949	Ornithorhynchus_anatinus
ENSXETG00000004530	rif1	84	60.831	ENSOCUG00000017435	RIF1	84	60.831	Oryctolagus_cuniculus
ENSXETG00000004530	rif1	66	47.049	ENSORLG00020001302	rif1	68	46.764	Oryzias_latipes_hni
ENSXETG00000004530	rif1	65	48.910	ENSORLG00015000009	rif1	66	48.287	Oryzias_latipes_hsok
ENSXETG00000004530	rif1	65	48.361	ENSOMEG00000021513	rif1	69	47.027	Oryzias_melastigma
ENSXETG00000004530	rif1	72	63.063	ENSOGAG00000006141	RIF1	58	63.063	Otolemur_garnettii
ENSXETG00000004530	rif1	70	46.812	ENSOARG00000008930	RIF1	86	58.470	Ovis_aries
ENSXETG00000004530	rif1	99	43.256	ENSPPAG00000023754	RIF1	99	43.659	Pan_paniscus
ENSXETG00000004530	rif1	84	61.329	ENSPPRG00000003618	RIF1	83	61.329	Panthera_pardus
ENSXETG00000004530	rif1	99	43.374	ENSPTRG00000012534	RIF1	99	43.738	Pan_troglodytes
ENSXETG00000004530	rif1	99	43.871	ENSPANG00000008525	RIF1	99	43.743	Papio_anubis
ENSXETG00000004530	rif1	62	45.051	ENSPKIG00000004267	rif1	53	49.717	Paramormyrops_kingsleyae
ENSXETG00000004530	rif1	74	48.148	ENSPMGG00000016141	rif1	84	47.811	Periophthalmus_magnuspinnatus
ENSXETG00000004530	rif1	84	58.445	ENSPEMG00000000446	Rif1	86	58.445	Peromyscus_maniculatus_bairdii
ENSXETG00000004530	rif1	72	47.289	ENSPCIG00000009185	RIF1	99	45.665	Phascolarctos_cinereus
ENSXETG00000004530	rif1	70	47.447	ENSPFOG00000017804	rif1	63	44.283	Poecilia_formosa
ENSXETG00000004530	rif1	64	47.448	ENSPFOG00000000554	-	55	46.378	Poecilia_formosa
ENSXETG00000004530	rif1	70	46.766	ENSPLAG00000017945	rif1	74	46.608	Poecilia_latipinna
ENSXETG00000004530	rif1	65	57.789	ENSPREG00000018052	rif1	64	51.178	Poecilia_reticulata
ENSXETG00000004530	rif1	99	43.694	ENSPPYG00000012846	RIF1	99	44.046	Pongo_abelii
ENSXETG00000004530	rif1	70	46.064	ENSPCOG00000027888	RIF1	99	43.833	Propithecus_coquereli
ENSXETG00000004530	rif1	73	46.687	ENSPNYG00000012940	rif1	76	46.458	Pundamilia_nyererei
ENSXETG00000004530	rif1	55	48.582	ENSRNOG00000054901	Rif1	53	48.729	Rattus_norvegicus
ENSXETG00000004530	rif1	91	54.073	ENSRBIG00000003704	RIF1	99	44.295	Rhinopithecus_bieti
ENSXETG00000004530	rif1	56	51.237	ENSRROG00000028206	RIF1	99	43.757	Rhinopithecus_roxellana
ENSXETG00000004530	rif1	99	43.428	ENSSBOG00000029530	RIF1	96	55.885	Saimiri_boliviensis_boliviensis
ENSXETG00000004530	rif1	86	64.759	ENSSHAG00000018552	RIF1	87	65.060	Sarcophilus_harrisii
ENSXETG00000004530	rif1	83	47.619	ENSSFOG00015021539	rif1	91	47.024	Scleropages_formosus
ENSXETG00000004530	rif1	70	46.197	ENSSMAG00000011704	rif1	65	48.773	Scophthalmus_maximus
ENSXETG00000004530	rif1	51	49.671	ENSSDUG00000015632	rif1	99	38.325	Seriola_dumerili
ENSXETG00000004530	rif1	78	49.544	ENSSLDG00000019531	rif1	76	49.544	Seriola_lalandi_dorsalis
ENSXETG00000004530	rif1	90	53.813	ENSSPUG00000003062	RIF1	98	53.813	Sphenodon_punctatus
ENSXETG00000004530	rif1	56	51.240	ENSSPAG00000018359	rif1	82	51.653	Stegastes_partitus
ENSXETG00000004530	rif1	99	58.713	ENSSSCG00000016395	RIF1	97	58.713	Sus_scrofa
ENSXETG00000004530	rif1	78	45.213	ENSTRUG00000015808	rif1	81	44.947	Takifugu_rubripes
ENSXETG00000004530	rif1	75	45.205	ENSTNIG00000011538	rif1	73	45.996	Tetraodon_nigroviridis
ENSXETG00000004530	rif1	71	64.375	ENSTBEG00000016082	RIF1	71	64.375	Tupaia_belangeri
ENSXETG00000004530	rif1	85	60.274	ENSTTRG00000011190	RIF1	85	60.274	Tursiops_truncatus
ENSXETG00000004530	rif1	74	61.934	ENSUAMG00000026385	RIF1	81	61.934	Ursus_americanus
ENSXETG00000004530	rif1	84	61.631	ENSUMAG00000000337	RIF1	84	61.631	Ursus_maritimus
ENSXETG00000004530	rif1	84	61.791	ENSVPAG00000002162	RIF1	83	61.791	Vicugna_pacos
ENSXETG00000004530	rif1	84	61.934	ENSVVUG00000011293	RIF1	85	61.934	Vulpes_vulpes
ENSXETG00000004530	rif1	70	44.139	ENSXMAG00000000506	rif1	69	44.626	Xiphophorus_maculatus