EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXETG00000004641 (Gene tree)
Gene ID: -
Gene Symbol: cpsf4l
Alias: -
Full Name: Xenopus tropicalis cleavage and polyadenylation specific factor 4-like (cpsf4l)%2C mRNA.
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Minus strand
Length: 19938 bases
Position: chrGL172940.1:575782-595719
Accession: NM_001016803
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000010090	zf-CCCH	PF00642.24	2.8e-23	1	1
ENSXETP00000010090	zf-CCHC	PF00098.23	8.9e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000010090	-	2562	-	ENSXETP00000010090	269 (aa)	-	Q28DB2

Gene Model

Click here to download ENSXETG00000004641's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000004641's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXETG00000004641	cpsf4l	99	57.609	ENSXETG00000009892	cpsf4	99	57.609

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000004641	cpsf4l	99	60.821	ENSG00000160917	CPSF4	99	87.387	Homo_sapiens
ENSXETG00000004641	cpsf4l	66	48.649	ENSAPOG00000004921	cpsf4	98	48.649	Acanthochromis_polyacanthus
ENSXETG00000004641	cpsf4l	99	60.821	ENSAMEG00000006252	CPSF4	99	60.821	Ailuropoda_melanoleuca
ENSXETG00000004641	cpsf4l	99	58.647	ENSACIG00000009248	cpsf4	99	58.647	Amphilophus_citrinellus
ENSXETG00000004641	cpsf4l	99	58.647	ENSAOCG00000019616	cpsf4	99	58.647	Amphiprion_ocellaris
ENSXETG00000004641	cpsf4l	99	58.647	ENSAPEG00000011679	cpsf4	99	58.647	Amphiprion_percula
ENSXETG00000004641	cpsf4l	99	58.364	ENSATEG00000007010	cpsf4	99	58.364	Anabas_testudineus
ENSXETG00000004641	cpsf4l	99	58.719	ENSACAG00000012941	CPSF4	88	61.255	Anolis_carolinensis
ENSXETG00000004641	cpsf4l	99	60.821	ENSANAG00000021360	CPSF4	99	60.821	Aotus_nancymaae
ENSXETG00000004641	cpsf4l	99	58.209	ENSACLG00000010374	cpsf4	99	58.209	Astatotilapia_calliptera
ENSXETG00000004641	cpsf4l	99	59.191	ENSAMXG00000031647	cpsf4	99	59.191	Astyanax_mexicanus
ENSXETG00000004641	cpsf4l	99	60.150	ENSBTAG00000002090	CPSF4	99	61.278	Bos_taurus
ENSXETG00000004641	cpsf4l	99	60.821	ENSCJAG00000015826	CPSF4	99	60.821	Callithrix_jacchus
ENSXETG00000004641	cpsf4l	99	60.821	ENSCAFG00000015036	CPSF4	99	73.214	Canis_familiaris
ENSXETG00000004641	cpsf4l	99	56.716	ENSCAFG00020014462	CPSF4	99	57.407	Canis_lupus_dingo
ENSXETG00000004641	cpsf4l	99	60.526	ENSCHIG00000014313	CPSF4	99	60.526	Capra_hircus
ENSXETG00000004641	cpsf4l	99	60.902	ENSTSYG00000005712	-	99	61.654	Carlito_syrichta
ENSXETG00000004641	cpsf4l	99	55.431	ENSTSYG00000014604	-	99	56.929	Carlito_syrichta
ENSXETG00000004641	cpsf4l	88	56.723	ENSTSYG00000008195	-	97	58.537	Carlito_syrichta
ENSXETG00000004641	cpsf4l	80	60.829	ENSCAPG00000013881	CPSF4	85	60.829	Cavia_aperea
ENSXETG00000004641	cpsf4l	99	60.526	ENSCPOG00000001783	CPSF4	99	61.278	Cavia_porcellus
ENSXETG00000004641	cpsf4l	99	60.821	ENSCCAG00000028291	CPSF4	99	60.821	Cebus_capucinus
ENSXETG00000004641	cpsf4l	99	61.567	ENSCATG00000038440	CPSF4	99	61.567	Cercocebus_atys
ENSXETG00000004641	cpsf4l	99	60.821	ENSCLAG00000007050	CPSF4	99	60.821	Chinchilla_lanigera
ENSXETG00000004641	cpsf4l	99	60.821	ENSCSAG00000017795	CPSF4	99	60.821	Chlorocebus_sabaeus
ENSXETG00000004641	cpsf4l	79	61.215	ENSCPBG00000020869	CPSF4	98	61.215	Chrysemys_picta_bellii
ENSXETG00000004641	cpsf4l	62	78.313	ENSCPBG00000010269	-	100	78.313	Chrysemys_picta_bellii
ENSXETG00000004641	cpsf4l	96	53.435	ENSCING00000021080	-	96	53.435	Ciona_intestinalis
ENSXETG00000004641	cpsf4l	96	49.650	ENSCSAVG00000011469	-	97	49.650	Ciona_savignyi
ENSXETG00000004641	cpsf4l	99	60.821	ENSCANG00000019384	CPSF4	99	60.821	Colobus_angolensis_palliatus
ENSXETG00000004641	cpsf4l	99	60.526	ENSCGRG00001024184	Cpsf4	99	61.278	Cricetulus_griseus_chok1gshd
ENSXETG00000004641	cpsf4l	99	60.821	ENSCGRG00000013892	Cpsf4	99	60.821	Cricetulus_griseus_crigri
ENSXETG00000004641	cpsf4l	99	57.194	ENSCSEG00000019055	cpsf4	99	57.194	Cynoglossus_semilaevis
ENSXETG00000004641	cpsf4l	99	60.440	ENSCVAG00000016528	cpsf4	99	60.440	Cyprinodon_variegatus
ENSXETG00000004641	cpsf4l	99	59.328	ENSDARG00000020217	cpsf4	99	57.664	Danio_rerio
ENSXETG00000004641	cpsf4l	99	60.821	ENSDNOG00000006344	CPSF4	99	60.821	Dasypus_novemcinctus
ENSXETG00000004641	cpsf4l	79	60.849	ENSDORG00000000742	Cpsf4	98	61.215	Dipodomys_ordii
ENSXETG00000004641	cpsf4l	100	47.619	FBgn0015621	Clp	99	48.814	Drosophila_melanogaster
ENSXETG00000004641	cpsf4l	61	77.576	ENSETEG00000002608	CPSF4	61	77.576	Echinops_telfairi
ENSXETG00000004641	cpsf4l	99	59.926	ENSEBUG00000012552	cpsf4	98	59.926	Eptatretus_burgeri
ENSXETG00000004641	cpsf4l	99	60.526	ENSEASG00005002487	CPSF4	99	61.278	Equus_asinus_asinus
ENSXETG00000004641	cpsf4l	99	60.821	ENSECAG00000007525	CPSF4	99	60.821	Equus_caballus
ENSXETG00000004641	cpsf4l	99	60.219	ENSELUG00000011481	cpsf4	99	60.517	Esox_lucius
ENSXETG00000004641	cpsf4l	99	60.821	ENSFCAG00000015070	CPSF4	99	60.821	Felis_catus
ENSXETG00000004641	cpsf4l	61	59.884	ENSFALG00000012906	-	100	59.884	Ficedula_albicollis
ENSXETG00000004641	cpsf4l	99	61.567	ENSFALG00000013799	CPSF4	99	61.567	Ficedula_albicollis
ENSXETG00000004641	cpsf4l	89	60.669	ENSFDAG00000014092	CPSF4	98	60.996	Fukomys_damarensis
ENSXETG00000004641	cpsf4l	99	60.370	ENSFHEG00000010880	cpsf4	99	60.370	Fundulus_heteroclitus
ENSXETG00000004641	cpsf4l	99	58.889	ENSGMOG00000002330	cpsf4	99	58.889	Gadus_morhua
ENSXETG00000004641	cpsf4l	100	37.433	ENSGALG00000004441	-	100	37.433	Gallus_gallus
ENSXETG00000004641	cpsf4l	99	61.567	ENSGALG00000004714	CPSF4	99	61.567	Gallus_gallus
ENSXETG00000004641	cpsf4l	99	60.370	ENSGAFG00000010580	cpsf4	99	60.370	Gambusia_affinis
ENSXETG00000004641	cpsf4l	99	58.519	ENSGACG00000007792	cpsf4	99	58.519	Gasterosteus_aculeatus
ENSXETG00000004641	cpsf4l	61	79.394	ENSGAGG00000020579	-	92	79.394	Gopherus_agassizii
ENSXETG00000004641	cpsf4l	99	60.821	ENSGAGG00000021835	CPSF4	99	60.821	Gopherus_agassizii
ENSXETG00000004641	cpsf4l	99	60.821	ENSGGOG00000015131	CPSF4	99	60.821	Gorilla_gorilla
ENSXETG00000004641	cpsf4l	99	58.209	ENSHBUG00000013699	cpsf4	99	58.209	Haplochromis_burtoni
ENSXETG00000004641	cpsf4l	99	58.781	ENSHGLG00000017150	CPSF4	99	60.370	Heterocephalus_glaber_female
ENSXETG00000004641	cpsf4l	86	57.787	ENSHGLG00100009215	-	99	59.574	Heterocephalus_glaber_male
ENSXETG00000004641	cpsf4l	66	50.847	ENSHGLG00100017302	-	88	50.262	Heterocephalus_glaber_male
ENSXETG00000004641	cpsf4l	99	60.150	ENSHCOG00000004397	cpsf4	99	60.150	Hippocampus_comes
ENSXETG00000004641	cpsf4l	99	58.759	ENSIPUG00000017147	cpsf4	99	59.636	Ictalurus_punctatus
ENSXETG00000004641	cpsf4l	99	60.821	ENSSTOG00000001688	CPSF4	99	61.278	Ictidomys_tridecemlineatus
ENSXETG00000004641	cpsf4l	99	60.821	ENSJJAG00000019426	Cpsf4	99	60.821	Jaculus_jaculus
ENSXETG00000004641	cpsf4l	99	59.701	ENSKMAG00000015642	cpsf4	99	59.701	Kryptolebias_marmoratus
ENSXETG00000004641	cpsf4l	100	59.707	ENSLACG00000018470	-	100	59.707	Latimeria_chalumnae
ENSXETG00000004641	cpsf4l	99	59.854	ENSLACG00000010938	CPSF4	99	59.854	Latimeria_chalumnae
ENSXETG00000004641	cpsf4l	99	60.448	ENSLOCG00000004814	cpsf4	99	60.370	Lepisosteus_oculatus
ENSXETG00000004641	cpsf4l	99	60.821	ENSLAFG00000000159	CPSF4	99	60.821	Loxodonta_africana
ENSXETG00000004641	cpsf4l	99	60.821	ENSMFAG00000001462	CPSF4	99	60.821	Macaca_fascicularis
ENSXETG00000004641	cpsf4l	99	60.821	ENSMMUG00000019191	CPSF4	99	60.821	Macaca_mulatta
ENSXETG00000004641	cpsf4l	99	60.821	ENSMNEG00000032306	CPSF4	99	60.821	Macaca_nemestrina
ENSXETG00000004641	cpsf4l	99	61.567	ENSMLEG00000034721	CPSF4	99	61.567	Mandrillus_leucophaeus
ENSXETG00000004641	cpsf4l	99	60.370	ENSMAMG00000006244	cpsf4	99	60.370	Mastacembelus_armatus
ENSXETG00000004641	cpsf4l	99	58.209	ENSMZEG00005007515	cpsf4	99	58.209	Maylandia_zebra
ENSXETG00000004641	cpsf4l	86	61.111	ENSMGAG00000004235	CPSF4	99	61.111	Meleagris_gallopavo
ENSXETG00000004641	cpsf4l	99	60.821	ENSMAUG00000021253	Cpsf4	99	60.821	Mesocricetus_auratus
ENSXETG00000004641	cpsf4l	99	61.194	ENSMICG00000017429	CPSF4	99	61.194	Microcebus_murinus
ENSXETG00000004641	cpsf4l	99	60.821	ENSMOCG00000014901	Cpsf4	99	60.821	Microtus_ochrogaster
ENSXETG00000004641	cpsf4l	99	58.271	ENSMMOG00000001813	cpsf4	95	69.091	Mola_mola
ENSXETG00000004641	cpsf4l	99	61.194	ENSMODG00000001367	CPSF4	99	61.194	Monodelphis_domestica
ENSXETG00000004641	cpsf4l	99	57.836	ENSMALG00000012611	cpsf4	99	57.836	Monopterus_albus
ENSXETG00000004641	cpsf4l	99	60.821	MGP_CAROLIEiJ_G0028012	Cpsf4	99	61.278	Mus_caroli
ENSXETG00000004641	cpsf4l	99	60.821	ENSMUSG00000029625	Cpsf4	99	61.278	Mus_musculus
ENSXETG00000004641	cpsf4l	99	60.821	MGP_PahariEiJ_G0024581	Cpsf4	99	61.278	Mus_pahari
ENSXETG00000004641	cpsf4l	99	60.821	MGP_SPRETEiJ_G0029013	Cpsf4	99	61.278	Mus_spretus
ENSXETG00000004641	cpsf4l	99	60.821	ENSMPUG00000016508	CPSF4	99	60.821	Mustela_putorius_furo
ENSXETG00000004641	cpsf4l	86	59.914	ENSMLUG00000010980	CPSF4	99	60.776	Myotis_lucifugus
ENSXETG00000004641	cpsf4l	99	60.526	ENSNGAG00000001567	Cpsf4	99	60.526	Nannospalax_galili
ENSXETG00000004641	cpsf4l	89	59.751	ENSNBRG00000003943	cpsf4	95	59.751	Neolamprologus_brichardi
ENSXETG00000004641	cpsf4l	99	61.278	ENSNLEG00000011074	CPSF4	99	61.654	Nomascus_leucogenys
ENSXETG00000004641	cpsf4l	99	61.194	ENSMEUG00000006955	CPSF4	99	61.194	Notamacropus_eugenii
ENSXETG00000004641	cpsf4l	99	60.448	ENSOPRG00000013663	CPSF4	99	60.448	Ochotona_princeps
ENSXETG00000004641	cpsf4l	99	46.667	ENSODEG00000009779	-	99	46.667	Octodon_degus
ENSXETG00000004641	cpsf4l	99	52.060	ENSODEG00000018283	-	91	52.809	Octodon_degus
ENSXETG00000004641	cpsf4l	99	60.821	ENSODEG00000011181	-	99	60.821	Octodon_degus
ENSXETG00000004641	cpsf4l	99	58.209	ENSONIG00000008495	cpsf4	99	58.209	Oreochromis_niloticus
ENSXETG00000004641	cpsf4l	97	55.185	ENSOANG00000009568	-	97	55.185	Ornithorhynchus_anatinus
ENSXETG00000004641	cpsf4l	86	62.605	ENSOANG00000007729	CPSF4	99	62.605	Ornithorhynchus_anatinus
ENSXETG00000004641	cpsf4l	99	60.821	ENSOCUG00000002437	CPSF4	69	60.821	Oryctolagus_cuniculus
ENSXETG00000004641	cpsf4l	99	58.993	ENSORLG00000022798	cpsf4	99	58.993	Oryzias_latipes
ENSXETG00000004641	cpsf4l	99	58.993	ENSORLG00020008548	cpsf4	99	58.993	Oryzias_latipes_hni
ENSXETG00000004641	cpsf4l	99	58.993	ENSORLG00015019575	cpsf4	99	58.993	Oryzias_latipes_hsok
ENSXETG00000004641	cpsf4l	99	57.554	ENSOMEG00000005176	cpsf4	99	57.554	Oryzias_melastigma
ENSXETG00000004641	cpsf4l	99	60.821	ENSOGAG00000010884	CPSF4	99	60.821	Otolemur_garnettii
ENSXETG00000004641	cpsf4l	99	55.147	ENSOARG00000018668	CPSF4	99	55.147	Ovis_aries
ENSXETG00000004641	cpsf4l	99	60.821	ENSPPAG00000043355	CPSF4	99	60.821	Pan_paniscus
ENSXETG00000004641	cpsf4l	99	60.821	ENSPPRG00000003134	CPSF4	99	60.821	Panthera_pardus
ENSXETG00000004641	cpsf4l	89	61.506	ENSPTIG00000005604	CPSF4	89	61.826	Panthera_tigris_altaica
ENSXETG00000004641	cpsf4l	99	60.821	ENSPTRG00000019453	CPSF4	99	60.821	Pan_troglodytes
ENSXETG00000004641	cpsf4l	99	60.821	ENSPANG00000023123	CPSF4	99	60.821	Papio_anubis
ENSXETG00000004641	cpsf4l	99	59.041	ENSPKIG00000014278	cpsf4	99	59.041	Paramormyrops_kingsleyae
ENSXETG00000004641	cpsf4l	79	60.930	ENSPSIG00000011229	CPSF4	99	60.930	Pelodiscus_sinensis
ENSXETG00000004641	cpsf4l	80	56.542	ENSPSIG00000018198	-	98	56.542	Pelodiscus_sinensis
ENSXETG00000004641	cpsf4l	99	54.511	ENSPMGG00000017735	cpsf4	99	54.511	Periophthalmus_magnuspinnatus
ENSXETG00000004641	cpsf4l	99	60.821	ENSPEMG00000004508	Cpsf4	99	60.821	Peromyscus_maniculatus_bairdii
ENSXETG00000004641	cpsf4l	99	61.194	ENSPCIG00000024776	CPSF4	99	61.194	Phascolarctos_cinereus
ENSXETG00000004641	cpsf4l	99	60.370	ENSPFOG00000014912	cpsf4	99	60.370	Poecilia_formosa
ENSXETG00000004641	cpsf4l	99	58.519	ENSPLAG00000009599	cpsf4	99	58.519	Poecilia_latipinna
ENSXETG00000004641	cpsf4l	99	60.370	ENSPMEG00000009790	cpsf4	99	60.370	Poecilia_mexicana
ENSXETG00000004641	cpsf4l	99	60.370	ENSPREG00000018166	cpsf4	99	60.370	Poecilia_reticulata
ENSXETG00000004641	cpsf4l	86	60.515	ENSPPYG00000017378	CPSF4	99	60.515	Pongo_abelii
ENSXETG00000004641	cpsf4l	99	60.075	ENSPCAG00000001892	CPSF4	99	60.075	Procavia_capensis
ENSXETG00000004641	cpsf4l	99	61.194	ENSPCOG00000012771	CPSF4	99	61.194	Propithecus_coquereli
ENSXETG00000004641	cpsf4l	99	56.343	ENSPVAG00000007531	CPSF4	99	56.343	Pteropus_vampyrus
ENSXETG00000004641	cpsf4l	99	58.209	ENSPNYG00000018559	cpsf4	99	58.209	Pundamilia_nyererei
ENSXETG00000004641	cpsf4l	99	59.420	ENSPNAG00000003736	cpsf4	99	59.410	Pygocentrus_nattereri
ENSXETG00000004641	cpsf4l	99	60.150	ENSRNOG00000000985	Cpsf4	99	61.278	Rattus_norvegicus
ENSXETG00000004641	cpsf4l	86	60.944	ENSRBIG00000033886	CPSF4	99	60.944	Rhinopithecus_bieti
ENSXETG00000004641	cpsf4l	99	60.526	ENSRROG00000040431	CPSF4	99	60.526	Rhinopithecus_roxellana
ENSXETG00000004641	cpsf4l	99	60.821	ENSSBOG00000020493	CPSF4	99	60.821	Saimiri_boliviensis_boliviensis
ENSXETG00000004641	cpsf4l	99	61.194	ENSSHAG00000011533	CPSF4	99	61.194	Sarcophilus_harrisii
ENSXETG00000004641	cpsf4l	99	59.206	ENSSFOG00015007883	cpsf4	99	59.206	Scleropages_formosus
ENSXETG00000004641	cpsf4l	99	59.398	ENSSMAG00000006374	cpsf4	99	59.398	Scophthalmus_maximus
ENSXETG00000004641	cpsf4l	99	59.023	ENSSDUG00000018887	cpsf4	99	59.023	Seriola_dumerili
ENSXETG00000004641	cpsf4l	99	59.398	ENSSLDG00000019078	cpsf4	99	59.398	Seriola_lalandi_dorsalis
ENSXETG00000004641	cpsf4l	86	60.944	ENSSARG00000012416	CPSF4	99	60.944	Sorex_araneus
ENSXETG00000004641	cpsf4l	99	60.448	ENSSPUG00000003549	CPSF4	99	60.448	Sphenodon_punctatus
ENSXETG00000004641	cpsf4l	97	58.015	ENSSPUG00000014803	-	99	58.015	Sphenodon_punctatus
ENSXETG00000004641	cpsf4l	99	58.647	ENSSPAG00000006174	cpsf4	99	58.647	Stegastes_partitus
ENSXETG00000004641	cpsf4l	99	60.526	ENSSSCG00000026896	CPSF4	99	60.902	Sus_scrofa
ENSXETG00000004641	cpsf4l	99	61.111	ENSTGUG00000007552	CPSF4	99	61.111	Taeniopygia_guttata
ENSXETG00000004641	cpsf4l	99	58.052	ENSTRUG00000024220	cpsf4	99	58.052	Takifugu_rubripes
ENSXETG00000004641	cpsf4l	99	58.209	ENSTNIG00000006265	cpsf4	99	58.209	Tetraodon_nigroviridis
ENSXETG00000004641	cpsf4l	86	56.710	ENSTBEG00000011406	CPSF4	99	56.710	Tupaia_belangeri
ENSXETG00000004641	cpsf4l	99	55.263	ENSTTRG00000003007	CPSF4	99	55.263	Tursiops_truncatus
ENSXETG00000004641	cpsf4l	94	59.127	ENSUAMG00000008051	CPSF4	87	60.558	Ursus_americanus
ENSXETG00000004641	cpsf4l	99	60.150	ENSUMAG00000009474	CPSF4	99	61.278	Ursus_maritimus
ENSXETG00000004641	cpsf4l	99	60.148	ENSVVUG00000008824	CPSF4	99	61.654	Vulpes_vulpes
ENSXETG00000004641	cpsf4l	99	60.370	ENSXCOG00000016040	cpsf4	99	60.370	Xiphophorus_couchianus
ENSXETG00000004641	cpsf4l	99	60.370	ENSXMAG00000024670	cpsf4	99	60.370	Xiphophorus_maculatus