EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXETG00000004912 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: Xenopus tropicalis uncharacterized LOC100144954 (LOC100144954)%2C mRNA.
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Minus strand
Length: 21196 bases
Position: chrGL172811.1:168534-189729
Accession: NM_001126526
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000063930	SMN	PF06003.12	7.4e-51	1	3
ENSXETP00000063930	SMN	PF06003.12	7.4e-51	2	3
ENSXETP00000063930	SMN	PF06003.12	7.4e-51	3	3
ENSXETP00000010688	SMN	PF06003.12	1.2e-49	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000010688	-	900	-	ENSXETP00000010688	300 (aa)	-	F6ZLW5
ENSXETT00000063332	-	1397	-	ENSXETP00000063930	285 (aa)	-	F7CKL2

Gene Model

Click here to download ENSXETG00000004912's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000004912's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXETG00000004912	-	82	50.685	ENSXETG00000018189	smn2	90	36.268

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000004912	-	78	59.016	ENSG00000205571	SMN2	90	36.131	Homo_sapiens
ENSXETG00000004912	-	78	59.016	ENSG00000172062	SMN1	90	36.131	Homo_sapiens
ENSXETG00000004912	-	82	63.793	ENSAPOG00000011324	smn1	87	33.462	Acanthochromis_polyacanthus
ENSXETG00000004912	-	80	55.556	ENSAMEG00000003316	-	88	36.396	Ailuropoda_melanoleuca
ENSXETG00000004912	-	76	59.322	ENSACIG00000007598	smn1	71	59.322	Amphilophus_citrinellus
ENSXETG00000004912	-	79	57.627	ENSACIG00000019772	-	93	33.077	Amphilophus_citrinellus
ENSXETG00000004912	-	82	63.793	ENSAOCG00000024444	smn1	87	32.819	Amphiprion_ocellaris
ENSXETG00000004912	-	82	62.069	ENSAPEG00000016504	smn1	90	32.432	Amphiprion_percula
ENSXETG00000004912	-	79	63.793	ENSATEG00000002182	smn1	76	32.046	Anabas_testudineus
ENSXETG00000004912	-	66	34.272	ENSAPLG00000010912	-	92	35.323	Anas_platyrhynchos
ENSXETG00000004912	-	81	56.667	ENSACAG00000010017	-	92	33.571	Anolis_carolinensis
ENSXETG00000004912	-	79	59.677	ENSANAG00000032133	-	90	38.488	Aotus_nancymaae
ENSXETG00000004912	-	82	57.627	ENSACLG00000007308	smn1	84	34.866	Astatotilapia_calliptera
ENSXETG00000004912	-	56	58.621	ENSAMXG00000013884	smn1	87	32.308	Astyanax_mexicanus
ENSXETG00000004912	-	79	60.317	ENSBTAG00000005743	SMN2	50	43.448	Bos_taurus
ENSXETG00000004912	-	79	58.730	ENSCJAG00000016290	-	90	37.895	Callithrix_jacchus
ENSXETG00000004912	-	78	59.016	ENSCAFG00000007812	SMN	91	36.331	Canis_familiaris
ENSXETG00000004912	-	78	59.016	ENSCAFG00020019229	-	85	36.232	Canis_lupus_dingo
ENSXETG00000004912	-	79	60.317	ENSCHIG00000015559	-	90	36.299	Capra_hircus
ENSXETG00000004912	-	79	60.317	ENSTSYG00000012058	-	86	37.218	Carlito_syrichta
ENSXETG00000004912	-	79	63.492	ENSCPOG00000036973	-	90	37.500	Cavia_porcellus
ENSXETG00000004912	-	79	63.492	ENSCPOG00000012328	-	91	36.491	Cavia_porcellus
ENSXETG00000004912	-	78	60.656	ENSCCAG00000018127	-	90	38.516	Cebus_capucinus
ENSXETG00000004912	-	79	61.905	ENSCATG00000037002	-	90	36.620	Cercocebus_atys
ENSXETG00000004912	-	60	38.235	ENSCLAG00000000284	-	91	35.689	Chinchilla_lanigera
ENSXETG00000004912	-	79	61.290	ENSCSAG00000015688	-	90	36.972	Chlorocebus_sabaeus
ENSXETG00000004912	-	74	62.712	ENSCHOG00000007346	-	99	34.483	Choloepus_hoffmanni
ENSXETG00000004912	-	78	55.932	ENSCPBG00000010968	-	92	33.209	Chrysemys_picta_bellii
ENSXETG00000004912	-	77	57.143	ENSCANG00000033324	-	89	32.847	Colobus_angolensis_palliatus
ENSXETG00000004912	-	79	60.317	ENSCANG00000038242	-	89	38.951	Colobus_angolensis_palliatus
ENSXETG00000004912	-	78	63.934	ENSCGRG00001017959	-	100	37.049	Cricetulus_griseus_chok1gshd
ENSXETG00000004912	-	78	63.934	ENSCGRG00000007698	Smn1	100	37.049	Cricetulus_griseus_crigri
ENSXETG00000004912	-	79	58.621	ENSCVAG00000007498	smn1	87	31.801	Cyprinodon_variegatus
ENSXETG00000004912	-	80	59.322	ENSDARG00000018494	smn1	87	32.331	Danio_rerio
ENSXETG00000004912	-	78	58.333	ENSDNOG00000045949	-	57	58.333	Dasypus_novemcinctus
ENSXETG00000004912	-	52	36.129	ENSDORG00000007082	Smn1	96	34.182	Dipodomys_ordii
ENSXETG00000004912	-	77	62.963	ENSETEG00000001406	-	64	62.963	Echinops_telfairi
ENSXETG00000004912	-	79	61.404	ENSEBUG00000011902	smn1	52	61.404	Eptatretus_burgeri
ENSXETG00000004912	-	69	52.459	ENSEASG00005018000	-	88	34.317	Equus_asinus_asinus
ENSXETG00000004912	-	78	63.934	ENSECAG00000015215	-	91	36.655	Equus_caballus
ENSXETG00000004912	-	79	54.412	ENSEEUG00000015777	-	99	34.866	Erinaceus_europaeus
ENSXETG00000004912	-	60	37.059	ENSFCAG00000028292	SMN	91	34.859	Felis_catus
ENSXETG00000004912	-	75	68.966	ENSFDAG00000017683	-	91	35.315	Fukomys_damarensis
ENSXETG00000004912	-	81	48.276	ENSGMOG00000017279	smn1	85	30.000	Gadus_morhua
ENSXETG00000004912	-	77	61.017	ENSGALG00000002430	SMN	92	36.434	Gallus_gallus
ENSXETG00000004912	-	80	63.793	ENSGAFG00000009501	smn1	90	31.724	Gambusia_affinis
ENSXETG00000004912	-	77	62.069	ENSGACG00000010584	smn1	84	32.950	Gasterosteus_aculeatus
ENSXETG00000004912	-	79	56.452	ENSGAGG00000011374	-	86	35.075	Gopherus_agassizii
ENSXETG00000004912	-	56	36.207	ENSGAGG00000013639	-	82	36.522	Gopherus_agassizii
ENSXETG00000004912	-	78	59.016	ENSGGOG00000026704	-	59	64.286	Gorilla_gorilla
ENSXETG00000004912	-	78	59.016	ENSGGOG00000003872	-	51	64.286	Gorilla_gorilla
ENSXETG00000004912	-	82	57.627	ENSHBUG00000013987	smn1	87	34.483	Haplochromis_burtoni
ENSXETG00000004912	-	78	66.667	ENSHGLG00000001905	-	92	35.336	Heterocephalus_glaber_female
ENSXETG00000004912	-	78	63.333	ENSHGLG00000001018	-	90	37.456	Heterocephalus_glaber_female
ENSXETG00000004912	-	78	66.667	ENSHGLG00100018676	-	90	35.955	Heterocephalus_glaber_male
ENSXETG00000004912	-	78	63.333	ENSHGLG00100011252	-	90	37.456	Heterocephalus_glaber_male
ENSXETG00000004912	-	76	62.264	ENSHCOG00000017136	smn1	83	33.588	Hippocampus_comes
ENSXETG00000004912	-	87	33.585	ENSIPUG00000012580	smn1	77	32.075	Ictalurus_punctatus
ENSXETG00000004912	-	79	61.905	ENSSTOG00000012288	-	89	35.741	Ictidomys_tridecemlineatus
ENSXETG00000004912	-	78	61.818	ENSKMAG00000007239	smn1	92	31.698	Kryptolebias_marmoratus
ENSXETG00000004912	-	82	62.069	ENSLBEG00000022550	smn1	91	34.572	Labrus_bergylta
ENSXETG00000004912	-	81	53.968	ENSLACG00000009808	-	84	34.686	Latimeria_chalumnae
ENSXETG00000004912	-	82	49.057	ENSLOCG00000000801	-	56	49.057	Lepisosteus_oculatus
ENSXETG00000004912	-	82	59.259	ENSLOCG00000011339	smn1	92	32.246	Lepisosteus_oculatus
ENSXETG00000004912	-	79	61.290	ENSLAFG00000003425	-	88	35.764	Loxodonta_africana
ENSXETG00000004912	-	79	60.317	ENSMFAG00000031523	SMN1	96	36.620	Macaca_fascicularis
ENSXETG00000004912	-	79	58.730	ENSMFAG00000008812	-	90	36.268	Macaca_fascicularis
ENSXETG00000004912	-	79	58.730	ENSMMUG00000030594	-	90	36.268	Macaca_mulatta
ENSXETG00000004912	-	79	60.317	ENSMMUG00000020214	SMN1	90	36.620	Macaca_mulatta
ENSXETG00000004912	-	69	33.803	ENSMNEG00000036423	-	86	31.076	Macaca_nemestrina
ENSXETG00000004912	-	79	60.317	ENSMNEG00000035094	-	88	37.546	Macaca_nemestrina
ENSXETG00000004912	-	80	60.317	ENSMLEG00000041902	-	90	36.620	Mandrillus_leucophaeus
ENSXETG00000004912	-	82	57.627	ENSMZEG00005013634	smn1	87	34.483	Maylandia_zebra
ENSXETG00000004912	-	79	63.333	ENSMAUG00000010262	Smn1	100	36.513	Mesocricetus_auratus
ENSXETG00000004912	-	77	63.793	ENSMICG00000034708	-	57	63.793	Microcebus_murinus
ENSXETG00000004912	-	100	37.667	ENSMOCG00000017833	Smn1	100	36.213	Microtus_ochrogaster
ENSXETG00000004912	-	80	62.069	ENSMMOG00000005504	smn1	88	35.985	Mola_mola
ENSXETG00000004912	-	81	57.377	ENSMODG00000001436	-	90	34.783	Monodelphis_domestica
ENSXETG00000004912	-	81	63.158	ENSMALG00000008025	smn1	93	32.246	Monopterus_albus
ENSXETG00000004912	-	79	62.903	MGP_CAROLIEiJ_G0018836	Smn1	91	38.710	Mus_caroli
ENSXETG00000004912	-	79	62.903	ENSMUSG00000021645	Smn1	91	38.710	Mus_musculus
ENSXETG00000004912	-	79	59.677	MGP_PahariEiJ_G0015911	Smn1	91	36.559	Mus_pahari
ENSXETG00000004912	-	79	62.903	MGP_SPRETEiJ_G0019718	Smn1	91	38.710	Mus_spretus
ENSXETG00000004912	-	79	57.143	ENSMPUG00000014470	-	88	37.643	Mustela_putorius_furo
ENSXETG00000004912	-	79	61.905	ENSMLUG00000010603	-	87	38.078	Myotis_lucifugus
ENSXETG00000004912	-	77	65.517	ENSNGAG00000019833	Smn1	100	35.948	Nannospalax_galili
ENSXETG00000004912	-	82	59.322	ENSNBRG00000023000	smn1	87	34.866	Neolamprologus_brichardi
ENSXETG00000004912	-	79	57.143	ENSNLEG00000004454	-	90	36.131	Nomascus_leucogenys
ENSXETG00000004912	-	66	34.597	ENSMEUG00000011393	-	99	34.298	Notamacropus_eugenii
ENSXETG00000004912	-	74	62.712	ENSOPRG00000002015	-	99	38.060	Ochotona_princeps
ENSXETG00000004912	-	80	61.017	ENSONIG00000011799	smn1	87	34.866	Oreochromis_niloticus
ENSXETG00000004912	-	81	57.143	ENSOANG00000001626	-	87	37.358	Ornithorhynchus_anatinus
ENSXETG00000004912	-	98	32.890	ENSOCUG00000026649	-	90	35.689	Oryctolagus_cuniculus
ENSXETG00000004912	-	77	62.069	ENSOCUG00000017097	-	90	36.071	Oryctolagus_cuniculus
ENSXETG00000004912	-	82	61.017	ENSORLG00000010552	smn1	87	34.981	Oryzias_latipes
ENSXETG00000004912	-	82	59.322	ENSORLG00020007936	smn1	86	35.227	Oryzias_latipes_hni
ENSXETG00000004912	-	82	59.322	ENSORLG00015022425	smn1	87	34.221	Oryzias_latipes_hsok
ENSXETG00000004912	-	81	61.404	ENSOMEG00000007824	smn1	51	42.857	Oryzias_melastigma
ENSXETG00000004912	-	78	63.934	ENSOGAG00000031414	-	88	37.218	Otolemur_garnettii
ENSXETG00000004912	-	76	58.730	ENSOARG00000005425	-	53	43.448	Ovis_aries
ENSXETG00000004912	-	78	59.016	ENSPPAG00000036640	-	90	36.496	Pan_paniscus
ENSXETG00000004912	-	60	37.059	ENSPPRG00000005575	-	91	34.859	Panthera_pardus
ENSXETG00000004912	-	100	37.294	ENSPTIG00000007745	-	91	33.818	Panthera_tigris_altaica
ENSXETG00000004912	-	78	59.016	ENSPTRG00000016955	-	90	36.770	Pan_troglodytes
ENSXETG00000004912	-	79	60.317	ENSPANG00000013601	-	90	36.620	Papio_anubis
ENSXETG00000004912	-	79	61.905	ENSPANG00000000253	-	89	38.321	Papio_anubis
ENSXETG00000004912	-	81	56.364	ENSPKIG00000011096	smn1	55	56.364	Paramormyrops_kingsleyae
ENSXETG00000004912	-	74	59.322	ENSPSIG00000014787	-	79	33.333	Pelodiscus_sinensis
ENSXETG00000004912	-	82	58.621	ENSPMGG00000012285	smn1	52	58.621	Periophthalmus_magnuspinnatus
ENSXETG00000004912	-	74	56.897	ENSPMAG00000000277	-	96	56.897	Petromyzon_marinus
ENSXETG00000004912	-	80	62.712	ENSPCIG00000025764	-	92	35.145	Phascolarctos_cinereus
ENSXETG00000004912	-	80	65.517	ENSPFOG00000007786	smn1	51	42.069	Poecilia_formosa
ENSXETG00000004912	-	80	63.793	ENSPLAG00000012071	smn1	51	63.793	Poecilia_latipinna
ENSXETG00000004912	-	80	65.517	ENSPMEG00000017085	smn1	51	65.517	Poecilia_mexicana
ENSXETG00000004912	-	80	65.517	ENSPREG00000005824	smn1	51	65.517	Poecilia_reticulata
ENSXETG00000004912	-	76	46.032	ENSPPYG00000019189	-	61	46.774	Pongo_abelii
ENSXETG00000004912	-	76	59.016	ENSPPYG00000015533	-	96	36.131	Pongo_abelii
ENSXETG00000004912	-	75	55.738	ENSPCAG00000004187	-	99	36.842	Procavia_capensis
ENSXETG00000004912	-	74	63.492	ENSPCOG00000022307	-	51	67.797	Propithecus_coquereli
ENSXETG00000004912	-	80	58.730	ENSPVAG00000005977	-	90	37.050	Pteropus_vampyrus
ENSXETG00000004912	-	82	59.322	ENSPNYG00000014148	smn1	87	34.866	Pundamilia_nyererei
ENSXETG00000004912	-	79	60.000	ENSPNAG00000014007	smn1	76	32.824	Pygocentrus_nattereri
ENSXETG00000004912	-	79	62.295	ENSRNOG00000018067	Smn1	91	37.011	Rattus_norvegicus
ENSXETG00000004912	-	79	60.317	ENSRBIG00000037052	-	90	37.324	Rhinopithecus_bieti
ENSXETG00000004912	-	79	58.730	ENSRBIG00000036775	-	84	35.249	Rhinopithecus_bieti
ENSXETG00000004912	-	80	58.462	ENSRROG00000031088	-	50	62.295	Rhinopithecus_roxellana
ENSXETG00000004912	-	79	60.317	ENSRROG00000039399	-	90	37.324	Rhinopithecus_roxellana
ENSXETG00000004912	-	79	58.730	ENSSBOG00000011665	-	90	39.437	Saimiri_boliviensis_boliviensis
ENSXETG00000004912	-	78	55.556	ENSSBOG00000020112	-	54	41.975	Saimiri_boliviensis_boliviensis
ENSXETG00000004912	-	80	62.712	ENSSHAG00000001499	-	96	35.145	Sarcophilus_harrisii
ENSXETG00000004912	-	79	63.636	ENSSFOG00015015507	smn1	52	63.636	Scleropages_formosus
ENSXETG00000004912	-	82	56.897	ENSSMAG00000007922	smn1	87	33.333	Scophthalmus_maximus
ENSXETG00000004912	-	82	56.897	ENSSDUG00000018533	smn1	87	31.660	Seriola_dumerili
ENSXETG00000004912	-	82	58.621	ENSSLDG00000021135	smn1	87	32.046	Seriola_lalandi_dorsalis
ENSXETG00000004912	-	82	52.000	ENSSPUG00000000373	-	86	36.226	Sphenodon_punctatus
ENSXETG00000004912	-	82	56.897	ENSSPAG00000004345	smn1	87	33.588	Stegastes_partitus
ENSXETG00000004912	-	79	60.317	ENSSSCG00000016970	-	96	33.692	Sus_scrofa
ENSXETG00000004912	-	81	58.065	ENSTGUG00000001548	-	91	34.586	Taeniopygia_guttata
ENSXETG00000004912	-	79	58.730	ENSTBEG00000002399	-	62	58.730	Tupaia_belangeri
ENSXETG00000004912	-	80	55.556	ENSUAMG00000024947	-	53	40.000	Ursus_americanus
ENSXETG00000004912	-	80	55.556	ENSUMAG00000007842	-	68	36.396	Ursus_maritimus
ENSXETG00000004912	-	78	59.016	ENSVVUG00000006934	-	91	36.331	Vulpes_vulpes
ENSXETG00000004912	-	78	62.069	ENSXMAG00000001521	smn1	51	40.000	Xiphophorus_maculatus