EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXETG00000006611 (Gene tree)
Gene ID: -
Gene Symbol: a1cf
Alias: -
Full Name: APOBEC1 complementation factor
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Plus strand
Length: 13020 bases
Position: chrGL172786.1:1342564-1355583
Accession: XB-GENE-952965
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000014487	DND1_DSRM	PF14709.7	6.5e-25	1	1
ENSXETP00000014487	RRM_1	PF00076.22	2.7e-27	1	2
ENSXETP00000014487	RRM_1	PF00076.22	2.7e-27	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000014487	-	1776	-	ENSXETP00000014487	591 (aa)	-	F6XXZ5

Gene Model

Click here to download ENSXETG00000006611's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000006611's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXETG00000006611	a1cf	72	61.616	ENSXETG00000022412	-	79	61.616
ENSXETG00000006611	a1cf	56	44.345	ENSXETG00000018075	syncrip	66	39.906
ENSXETG00000006611	a1cf	51	53.846	ENSXETG00000032067	-	80	55.853
ENSXETG00000006611	a1cf	76	52.463	ENSXETG00000012802	rbm47	86	59.444
ENSXETG00000006611	a1cf	73	37.380	ENSXETG00000032344	-	86	37.380
ENSXETG00000006611	a1cf	52	48.220	ENSXETG00000007102	hnrnpr	59	46.835

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000006611	a1cf	100	78.297	ENSG00000148584	A1CF	100	88.557	Homo_sapiens
ENSXETG00000006611	a1cf	100	66.060	ENSAPOG00000008259	a1cf	100	67.208	Acanthochromis_polyacanthus
ENSXETG00000006611	a1cf	100	78.559	ENSAMEG00000000523	A1CF	100	78.727	Ailuropoda_melanoleuca
ENSXETG00000006611	a1cf	100	69.657	ENSACIG00000008632	a1cf	100	70.636	Amphilophus_citrinellus
ENSXETG00000006611	a1cf	100	67.159	ENSAOCG00000023744	a1cf	96	75.072	Amphiprion_ocellaris
ENSXETG00000006611	a1cf	100	68.144	ENSAPEG00000009537	a1cf	100	69.934	Amphiprion_percula
ENSXETG00000006611	a1cf	100	70.492	ENSATEG00000013720	a1cf	100	70.820	Anabas_testudineus
ENSXETG00000006611	a1cf	100	80.303	ENSAPLG00000002964	A1CF	100	80.303	Anas_platyrhynchos
ENSXETG00000006611	a1cf	100	77.441	ENSACAG00000015269	A1CF	100	77.441	Anolis_carolinensis
ENSXETG00000006611	a1cf	100	77.462	ENSANAG00000019974	A1CF	100	77.629	Aotus_nancymaae
ENSXETG00000006611	a1cf	100	70.315	ENSACLG00000017428	a1cf	100	70.978	Astatotilapia_calliptera
ENSXETG00000006611	a1cf	100	69.307	ENSAMXG00000018180	a1cf	100	69.142	Astyanax_mexicanus
ENSXETG00000006611	a1cf	100	77.167	ENSBTAG00000021195	A1CF	98	79.298	Bos_taurus
ENSXETG00000006611	a1cf	100	78.965	ENSCJAG00000005045	A1CF	100	79.132	Callithrix_jacchus
ENSXETG00000006611	a1cf	100	79.195	ENSCAFG00000015581	A1CF	100	79.195	Canis_familiaris
ENSXETG00000006611	a1cf	100	79.195	ENSCAFG00020026421	A1CF	100	79.195	Canis_lupus_dingo
ENSXETG00000006611	a1cf	100	77.500	ENSCHIG00000020411	A1CF	100	77.500	Capra_hircus
ENSXETG00000006611	a1cf	94	78.191	ENSTSYG00000001755	A1CF	100	77.128	Carlito_syrichta
ENSXETG00000006611	a1cf	87	67.593	ENSCAPG00000017386	A1CF	100	66.975	Cavia_aperea
ENSXETG00000006611	a1cf	100	77.462	ENSCPOG00000009807	A1CF	100	77.796	Cavia_porcellus
ENSXETG00000006611	a1cf	100	79.264	ENSCCAG00000018168	A1CF	100	79.264	Cebus_capucinus
ENSXETG00000006611	a1cf	100	77.554	ENSCATG00000043715	A1CF	100	77.722	Cercocebus_atys
ENSXETG00000006611	a1cf	100	77.500	ENSCLAG00000010424	A1CF	100	77.667	Chinchilla_lanigera
ENSXETG00000006611	a1cf	100	78.894	ENSCSAG00000007032	A1CF	100	79.062	Chlorocebus_sabaeus
ENSXETG00000006611	a1cf	98	72.941	ENSCHOG00000009089	A1CF	98	73.109	Choloepus_hoffmanni
ENSXETG00000006611	a1cf	100	80.672	ENSCPBG00000026464	A1CF	100	80.672	Chrysemys_picta_bellii
ENSXETG00000006611	a1cf	100	78.559	ENSCANG00000038032	A1CF	100	78.727	Colobus_angolensis_palliatus
ENSXETG00000006611	a1cf	100	77.833	ENSCGRG00001017413	A1cf	100	77.833	Cricetulus_griseus_chok1gshd
ENSXETG00000006611	a1cf	100	77.500	ENSCGRG00000017332	A1cf	100	77.667	Cricetulus_griseus_crigri
ENSXETG00000006611	a1cf	100	70.297	ENSCSEG00000002361	a1cf	100	70.792	Cynoglossus_semilaevis
ENSXETG00000006611	a1cf	100	70.328	ENSCVAG00000010520	a1cf	100	71.475	Cyprinodon_variegatus
ENSXETG00000006611	a1cf	100	74.080	ENSDARG00000002968	a1cf	100	74.080	Danio_rerio
ENSXETG00000006611	a1cf	100	77.833	ENSDNOG00000002829	A1CF	100	77.833	Dasypus_novemcinctus
ENSXETG00000006611	a1cf	75	85.306	ENSETEG00000012527	A1CF	76	85.306	Echinops_telfairi
ENSXETG00000006611	a1cf	100	78.073	ENSEASG00005012924	A1CF	100	78.405	Equus_asinus_asinus
ENSXETG00000006611	a1cf	100	77.907	ENSECAG00000010424	A1CF	100	78.239	Equus_caballus
ENSXETG00000006611	a1cf	80	70.851	ENSEEUG00000000013	A1CF	99	70.851	Erinaceus_europaeus
ENSXETG00000006611	a1cf	100	76.351	ENSELUG00000003159	a1cf	100	76.351	Esox_lucius
ENSXETG00000006611	a1cf	100	77.052	ENSFCAG00000011179	A1CF	100	77.722	Felis_catus
ENSXETG00000006611	a1cf	100	78.788	ENSFALG00000013183	A1CF	100	78.788	Ficedula_albicollis
ENSXETG00000006611	a1cf	100	75.667	ENSFDAG00000019371	A1CF	100	75.833	Fukomys_damarensis
ENSXETG00000006611	a1cf	100	64.754	ENSFHEG00000019652	a1cf	96	82.812	Fundulus_heteroclitus
ENSXETG00000006611	a1cf	100	67.667	ENSGMOG00000018943	a1cf	100	67.887	Gadus_morhua
ENSXETG00000006611	a1cf	95	80.249	ENSGALG00000003765	A1CF	96	80.249	Gallus_gallus
ENSXETG00000006611	a1cf	100	66.118	ENSGAFG00000014868	a1cf	100	66.118	Gambusia_affinis
ENSXETG00000006611	a1cf	100	68.092	ENSGACG00000010241	a1cf	100	68.586	Gasterosteus_aculeatus
ENSXETG00000006611	a1cf	94	80.036	ENSGAGG00000016508	A1CF	97	80.036	Gopherus_agassizii
ENSXETG00000006611	a1cf	100	78.464	ENSGGOG00000009670	A1CF	100	78.631	Gorilla_gorilla
ENSXETG00000006611	a1cf	100	69.494	ENSHBUG00000021959	a1cf	100	70.310	Haplochromis_burtoni
ENSXETG00000006611	a1cf	100	77.333	ENSHGLG00000008955	A1CF	100	77.333	Heterocephalus_glaber_female
ENSXETG00000006611	a1cf	100	77.333	ENSHGLG00100000518	A1CF	100	77.333	Heterocephalus_glaber_male
ENSXETG00000006611	a1cf	95	66.724	ENSHCOG00000017669	a1cf	100	68.352	Hippocampus_comes
ENSXETG00000006611	a1cf	91	76.493	ENSIPUG00000010367	a1cf	99	75.135	Ictalurus_punctatus
ENSXETG00000006611	a1cf	100	70.732	ENSKMAG00000006568	a1cf	100	71.707	Kryptolebias_marmoratus
ENSXETG00000006611	a1cf	99	71.031	ENSLBEG00000020994	a1cf	98	71.664	Labrus_bergylta
ENSXETG00000006611	a1cf	100	78.716	ENSLACG00000008061	A1CF	100	78.716	Latimeria_chalumnae
ENSXETG00000006611	a1cf	100	77.066	ENSLOCG00000006302	a1cf	100	77.234	Lepisosteus_oculatus
ENSXETG00000006611	a1cf	100	77.833	ENSLAFG00000015462	A1CF	100	78.167	Loxodonta_africana
ENSXETG00000006611	a1cf	100	77.722	ENSMFAG00000035948	A1CF	100	77.889	Macaca_fascicularis
ENSXETG00000006611	a1cf	100	77.722	ENSMMUG00000007077	A1CF	100	77.889	Macaca_mulatta
ENSXETG00000006611	a1cf	100	77.722	ENSMNEG00000031454	A1CF	100	77.889	Macaca_nemestrina
ENSXETG00000006611	a1cf	100	78.727	ENSMLEG00000037223	A1CF	100	78.894	Mandrillus_leucophaeus
ENSXETG00000006611	a1cf	100	68.576	ENSMAMG00000010402	a1cf	100	69.608	Mastacembelus_armatus
ENSXETG00000006611	a1cf	100	72.697	ENSMZEG00005013245	a1cf	100	72.697	Maylandia_zebra
ENSXETG00000006611	a1cf	100	80.000	ENSMGAG00000001507	A1CF	100	80.000	Meleagris_gallopavo
ENSXETG00000006611	a1cf	100	77.000	ENSMAUG00000007422	A1cf	100	77.000	Mesocricetus_auratus
ENSXETG00000006611	a1cf	100	76.451	ENSMICG00000003377	A1CF	100	76.451	Microcebus_murinus
ENSXETG00000006611	a1cf	100	77.167	ENSMOCG00000021536	A1cf	100	77.500	Microtus_ochrogaster
ENSXETG00000006611	a1cf	100	62.687	ENSMMOG00000009422	a1cf	100	63.516	Mola_mola
ENSXETG00000006611	a1cf	91	78.318	ENSMODG00000016478	A1CF	99	78.044	Monodelphis_domestica
ENSXETG00000006611	a1cf	100	67.731	ENSMALG00000012992	a1cf	100	67.731	Monopterus_albus
ENSXETG00000006611	a1cf	100	76.500	MGP_CAROLIEiJ_G0022873	A1cf	100	76.833	Mus_caroli
ENSXETG00000006611	a1cf	100	76.500	ENSMUSG00000052595	A1cf	99	77.953	Mus_musculus
ENSXETG00000006611	a1cf	100	76.167	MGP_PahariEiJ_G0014366	A1cf	100	76.167	Mus_pahari
ENSXETG00000006611	a1cf	100	76.333	MGP_SPRETEiJ_G0023792	A1cf	100	76.667	Mus_spretus
ENSXETG00000006611	a1cf	100	72.027	ENSMPUG00000016971	A1CF	100	72.529	Mustela_putorius_furo
ENSXETG00000006611	a1cf	100	77.000	ENSMLUG00000016071	A1CF	100	77.333	Myotis_lucifugus
ENSXETG00000006611	a1cf	100	78.000	ENSNGAG00000015136	A1cf	100	78.167	Nannospalax_galili
ENSXETG00000006611	a1cf	100	69.494	ENSNBRG00000001712	a1cf	100	70.310	Neolamprologus_brichardi
ENSXETG00000006611	a1cf	100	78.667	ENSNLEG00000012028	A1CF	100	78.833	Nomascus_leucogenys
ENSXETG00000006611	a1cf	94	77.580	ENSMEUG00000015909	A1CF	100	77.580	Notamacropus_eugenii
ENSXETG00000006611	a1cf	78	87.065	ENSOPRG00000010667	A1CF	87	87.065	Ochotona_princeps
ENSXETG00000006611	a1cf	100	69.984	ENSONIG00000019105	a1cf	100	70.147	Oreochromis_niloticus
ENSXETG00000006611	a1cf	79	75.584	ENSOANG00000007360	A1CF	99	75.584	Ornithorhynchus_anatinus
ENSXETG00000006611	a1cf	100	76.040	ENSOCUG00000011587	A1CF	100	76.206	Oryctolagus_cuniculus
ENSXETG00000006611	a1cf	100	70.909	ENSORLG00000013342	a1cf	100	70.909	Oryzias_latipes
ENSXETG00000006611	a1cf	100	70.704	ENSORLG00020000586	a1cf	100	71.031	Oryzias_latipes_hni
ENSXETG00000006611	a1cf	100	70.704	ENSORLG00015018569	a1cf	100	71.031	Oryzias_latipes_hsok
ENSXETG00000006611	a1cf	100	70.213	ENSOMEG00000013531	a1cf	100	70.213	Oryzias_melastigma
ENSXETG00000006611	a1cf	100	78.559	ENSOGAG00000012884	A1CF	100	78.727	Otolemur_garnettii
ENSXETG00000006611	a1cf	100	77.500	ENSOARG00000013695	A1CF	100	77.667	Ovis_aries
ENSXETG00000006611	a1cf	97	77.108	ENSPPAG00000028115	A1CF	99	80.924	Pan_paniscus
ENSXETG00000006611	a1cf	100	78.224	ENSPPRG00000012180	A1CF	100	78.894	Panthera_pardus
ENSXETG00000006611	a1cf	100	78.224	ENSPTIG00000021223	A1CF	100	78.894	Panthera_tigris_altaica
ENSXETG00000006611	a1cf	100	78.297	ENSPTRG00000002508	A1CF	100	78.464	Pan_troglodytes
ENSXETG00000006611	a1cf	100	77.722	ENSPANG00000021988	A1CF	100	77.889	Papio_anubis
ENSXETG00000006611	a1cf	100	75.544	ENSPKIG00000025176	a1cf	100	75.712	Paramormyrops_kingsleyae
ENSXETG00000006611	a1cf	100	79.832	ENSPSIG00000010318	A1CF	100	79.832	Pelodiscus_sinensis
ENSXETG00000006611	a1cf	98	63.590	ENSPMGG00000013359	a1cf	99	63.932	Periophthalmus_magnuspinnatus
ENSXETG00000006611	a1cf	100	77.667	ENSPEMG00000015021	A1cf	100	77.667	Peromyscus_maniculatus_bairdii
ENSXETG00000006611	a1cf	100	77.143	ENSPCIG00000002175	A1CF	100	77.143	Phascolarctos_cinereus
ENSXETG00000006611	a1cf	100	71.498	ENSPFOG00000006683	a1cf	100	72.313	Poecilia_formosa
ENSXETG00000006611	a1cf	100	71.498	ENSPFOG00000007437	-	100	72.313	Poecilia_formosa
ENSXETG00000006611	a1cf	100	70.358	ENSPLAG00000000026	a1cf	100	71.173	Poecilia_latipinna
ENSXETG00000006611	a1cf	100	70.358	ENSPLAG00000001210	-	100	71.173	Poecilia_latipinna
ENSXETG00000006611	a1cf	100	68.791	ENSPMEG00000015529	-	100	69.608	Poecilia_mexicana
ENSXETG00000006611	a1cf	100	67.647	ENSPMEG00000000921	a1cf	100	68.464	Poecilia_mexicana
ENSXETG00000006611	a1cf	100	71.336	ENSPREG00000016298	a1cf	100	72.150	Poecilia_reticulata
ENSXETG00000006611	a1cf	100	77.667	ENSPPYG00000002819	A1CF	100	77.833	Pongo_abelii
ENSXETG00000006611	a1cf	79	59.119	ENSPCAG00000006463	A1CF	79	59.119	Procavia_capensis
ENSXETG00000006611	a1cf	100	77.704	ENSPCOG00000024172	A1CF	100	77.704	Propithecus_coquereli
ENSXETG00000006611	a1cf	100	70.799	ENSPNYG00000017944	a1cf	100	71.615	Pundamilia_nyererei
ENSXETG00000006611	a1cf	100	73.510	ENSPNAG00000007704	a1cf	100	73.675	Pygocentrus_nattereri
ENSXETG00000006611	a1cf	100	75.833	ENSRNOG00000033195	A1cf	100	76.167	Rattus_norvegicus
ENSXETG00000006611	a1cf	100	72.788	ENSRBIG00000042892	A1CF	100	75.244	Rhinopithecus_bieti
ENSXETG00000006611	a1cf	100	78.894	ENSRROG00000041398	A1CF	100	79.062	Rhinopithecus_roxellana
ENSXETG00000006611	a1cf	100	78.667	ENSSBOG00000021930	A1CF	100	78.833	Saimiri_boliviensis_boliviensis
ENSXETG00000006611	a1cf	100	78.392	ENSSHAG00000005096	A1CF	100	78.392	Sarcophilus_harrisii
ENSXETG00000006611	a1cf	100	73.675	ENSSFOG00015011774	a1cf	100	74.172	Scleropages_formosus
ENSXETG00000006611	a1cf	100	69.707	ENSSMAG00000013271	a1cf	100	70.033	Scophthalmus_maximus
ENSXETG00000006611	a1cf	100	70.978	ENSSDUG00000013930	a1cf	100	71.144	Seriola_dumerili
ENSXETG00000006611	a1cf	100	65.058	ENSSLDG00000004290	a1cf	100	65.225	Seriola_lalandi_dorsalis
ENSXETG00000006611	a1cf	83	89.535	ENSSARG00000005940	A1CF	84	89.535	Sorex_araneus
ENSXETG00000006611	a1cf	95	79.255	ENSSPUG00000006797	A1CF	95	79.255	Sphenodon_punctatus
ENSXETG00000006611	a1cf	100	78.500	ENSSSCG00000010431	A1CF	100	78.667	Sus_scrofa
ENSXETG00000006611	a1cf	100	79.402	ENSTGUG00000005090	A1CF	100	79.402	Taeniopygia_guttata
ENSXETG00000006611	a1cf	100	69.821	ENSTRUG00000001982	a1cf	100	69.984	Takifugu_rubripes
ENSXETG00000006611	a1cf	100	69.481	ENSTNIG00000003580	a1cf	100	69.481	Tetraodon_nigroviridis
ENSXETG00000006611	a1cf	97	71.649	ENSTTRG00000013190	A1CF	95	71.649	Tursiops_truncatus
ENSXETG00000006611	a1cf	100	77.554	ENSUAMG00000020065	A1CF	100	77.722	Ursus_americanus
ENSXETG00000006611	a1cf	100	78.655	ENSUMAG00000011162	A1CF	100	78.992	Ursus_maritimus
ENSXETG00000006611	a1cf	87	74.095	ENSVPAG00000006130	A1CF	86	74.095	Vicugna_pacos
ENSXETG00000006611	a1cf	100	78.188	ENSVVUG00000002504	A1CF	100	78.188	Vulpes_vulpes
ENSXETG00000006611	a1cf	100	71.967	ENSXCOG00000003302	a1cf	100	72.131	Xiphophorus_couchianus
ENSXETG00000006611	a1cf	100	73.115	ENSXMAG00000016703	a1cf	100	73.279	Xiphophorus_maculatus