EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXETG00000007351 (Gene tree)
Gene ID: -
Gene Symbol: scaf4
Alias: -
Full Name: SR-related CTD associated factor 4
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Minus strand
Length: 55633 bases
Position: chrGL173010.1:468612-524244
Accession: XB-GENE-920206
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000059247	RRM_1	PF00076.22	1.9e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000015997	-	5926	-	ENSXETP00000015997	482 (aa)	-	Q5BJ33
ENSXETT00000061190	-	3486	-	ENSXETP00000059247	1085 (aa)	-	F6T4Z3

Gene Model

Click here to download ENSXETG00000007351's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000007351's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000007351	scaf4	63	66.619	ENSG00000156304	SCAF4	99	56.585	Homo_sapiens
ENSXETG00000007351	scaf4	87	51.259	ENSAPOG00000002946	scaf4a	90	55.186	Acanthochromis_polyacanthus
ENSXETG00000007351	scaf4	87	50.853	ENSAOCG00000000615	scaf4a	61	54.731	Amphiprion_ocellaris
ENSXETG00000007351	scaf4	87	50.853	ENSAPEG00000021229	scaf4a	61	54.604	Amphiprion_percula
ENSXETG00000007351	scaf4	52	54.839	ENSATEG00000011758	scaf4b	68	55.686	Anabas_testudineus
ENSXETG00000007351	scaf4	99	56.582	ENSAPLG00000002509	SCAF4	99	57.005	Anas_platyrhynchos
ENSXETG00000007351	scaf4	67	57.814	ENSACAG00000002569	SCAF4	69	59.080	Anolis_carolinensis
ENSXETG00000007351	scaf4	91	66.619	ENSANAG00000037494	SCAF4	99	56.333	Aotus_nancymaae
ENSXETG00000007351	scaf4	50	61.429	ENSACLG00000024833	scaf4b	60	65.641	Astatotilapia_calliptera
ENSXETG00000007351	scaf4	86	49.053	ENSAMXG00000008585	scaf4a	66	51.950	Astyanax_mexicanus
ENSXETG00000007351	scaf4	63	61.966	ENSBTAG00000018855	SCAF4	99	54.895	Bos_taurus
ENSXETG00000007351	scaf4	91	66.714	ENSCJAG00000008993	SCAF4	99	55.371	Callithrix_jacchus
ENSXETG00000007351	scaf4	62	65.702	ENSCAFG00000008863	SCAF4	99	55.970	Canis_familiaris
ENSXETG00000007351	scaf4	51	82.390	ENSCAFG00020026019	SCAF4	94	61.179	Canis_lupus_dingo
ENSXETG00000007351	scaf4	63	62.625	ENSCHIG00000008385	SCAF4	99	54.734	Capra_hircus
ENSXETG00000007351	scaf4	62	66.959	ENSTSYG00000011344	SCAF4	99	56.625	Carlito_syrichta
ENSXETG00000007351	scaf4	63	65.963	ENSCPOG00000012443	SCAF4	99	56.698	Cavia_porcellus
ENSXETG00000007351	scaf4	63	66.714	ENSCCAG00000033727	SCAF4	99	55.639	Cebus_capucinus
ENSXETG00000007351	scaf4	75	66.324	ENSCATG00000030379	SCAF4	99	56.203	Cercocebus_atys
ENSXETG00000007351	scaf4	61	60.714	ENSCLAG00000006298	SCAF4	99	54.174	Chinchilla_lanigera
ENSXETG00000007351	scaf4	76	66.524	ENSCSAG00000009438	SCAF4	99	55.694	Chlorocebus_sabaeus
ENSXETG00000007351	scaf4	63	66.476	ENSCANG00000029847	SCAF4	99	55.676	Colobus_angolensis_palliatus
ENSXETG00000007351	scaf4	71	59.195	ENSDARG00000077093	scaf4a	62	53.677	Danio_rerio
ENSXETG00000007351	scaf4	64	57.242	ENSDNOG00000019014	SCAF4	94	54.149	Dasypus_novemcinctus
ENSXETG00000007351	scaf4	57	58.608	ENSETEG00000000583	SCAF4	95	52.661	Echinops_telfairi
ENSXETG00000007351	scaf4	63	65.812	ENSEASG00005007756	SCAF4	99	55.602	Equus_asinus_asinus
ENSXETG00000007351	scaf4	63	65.812	ENSECAG00000014248	SCAF4	99	55.723	Equus_caballus
ENSXETG00000007351	scaf4	63	62.288	ENSFCAG00000002228	SCAF4	99	55.167	Felis_catus
ENSXETG00000007351	scaf4	62	62.500	ENSFDAG00000017780	SCAF4	99	55.008	Fukomys_damarensis
ENSXETG00000007351	scaf4	72	49.384	ENSFHEG00000017866	scaf4a	81	52.070	Fundulus_heteroclitus
ENSXETG00000007351	scaf4	52	64.621	ENSGMOG00000015188	scaf4a	73	63.899	Gadus_morhua
ENSXETG00000007351	scaf4	99	57.568	ENSGALG00000033965	SCAF4	99	58.566	Gallus_gallus
ENSXETG00000007351	scaf4	77	51.196	ENSGACG00000020580	scaf4a	63	61.776	Gasterosteus_aculeatus
ENSXETG00000007351	scaf4	63	66.619	ENSGGOG00000015557	SCAF4	72	63.218	Gorilla_gorilla
ENSXETG00000007351	scaf4	72	55.130	ENSHBUG00000007920	scaf4a	86	55.612	Haplochromis_burtoni
ENSXETG00000007351	scaf4	82	59.218	ENSIPUG00000011285	scaf4	67	56.522	Ictalurus_punctatus
ENSXETG00000007351	scaf4	61	54.825	ENSSTOG00000004450	SCAF4	99	50.765	Ictidomys_tridecemlineatus
ENSXETG00000007351	scaf4	62	64.192	ENSJJAG00000019447	Scaf4	99	54.850	Jaculus_jaculus
ENSXETG00000007351	scaf4	84	49.175	ENSLBEG00000014675	scaf4a	60	52.778	Labrus_bergylta
ENSXETG00000007351	scaf4	96	53.269	ENSLACG00000013913	SCAF4	99	52.915	Latimeria_chalumnae
ENSXETG00000007351	scaf4	82	57.421	ENSLOCG00000009162	scaf4a	65	59.056	Lepisosteus_oculatus
ENSXETG00000007351	scaf4	64	65.585	ENSLAFG00000010710	SCAF4	65	64.962	Loxodonta_africana
ENSXETG00000007351	scaf4	76	66.476	ENSMFAG00000037668	SCAF4	99	56.013	Macaca_fascicularis
ENSXETG00000007351	scaf4	76	66.476	ENSMMUG00000001712	SCAF4	99	55.931	Macaca_mulatta
ENSXETG00000007351	scaf4	75	66.618	ENSMNEG00000032966	SCAF4	99	56.209	Macaca_nemestrina
ENSXETG00000007351	scaf4	75	65.991	ENSMLEG00000039674	SCAF4	99	54.742	Mandrillus_leucophaeus
ENSXETG00000007351	scaf4	52	51.515	ENSMAMG00000013223	scaf4a	77	54.299	Mastacembelus_armatus
ENSXETG00000007351	scaf4	87	50.195	ENSMZEG00005024349	scaf4a	60	55.230	Maylandia_zebra
ENSXETG00000007351	scaf4	99	57.143	ENSMGAG00000014515	SCAF4	99	58.414	Meleagris_gallopavo
ENSXETG00000007351	scaf4	62	61.593	ENSMAUG00000013307	Scaf4	99	54.492	Mesocricetus_auratus
ENSXETG00000007351	scaf4	63	66.857	ENSMICG00000005256	SCAF4	99	56.949	Microcebus_murinus
ENSXETG00000007351	scaf4	51	60.964	MGP_PahariEiJ_G0016649	Scaf4	99	56.312	Mus_pahari
ENSXETG00000007351	scaf4	76	61.857	ENSMPUG00000001078	SCAF4	99	54.568	Mustela_putorius_furo
ENSXETG00000007351	scaf4	63	62.678	ENSMLUG00000011472	SCAF4	66	59.878	Myotis_lucifugus
ENSXETG00000007351	scaf4	62	61.693	ENSNGAG00000005214	Scaf4	99	54.195	Nannospalax_galili
ENSXETG00000007351	scaf4	63	66.476	ENSNLEG00000003569	SCAF4	99	55.796	Nomascus_leucogenys
ENSXETG00000007351	scaf4	73	57.263	ENSOPRG00000007016	SCAF4	71	62.366	Ochotona_princeps
ENSXETG00000007351	scaf4	72	54.141	ENSONIG00000004687	scaf4a	90	54.419	Oreochromis_niloticus
ENSXETG00000007351	scaf4	63	65.674	ENSOCUG00000008336	SCAF4	99	56.757	Oryctolagus_cuniculus
ENSXETG00000007351	scaf4	53	63.291	ENSORLG00000004384	scaf4a	75	64.479	Oryzias_latipes
ENSXETG00000007351	scaf4	77	58.356	ENSORLG00020011857	scaf4a	52	64.479	Oryzias_latipes_hni
ENSXETG00000007351	scaf4	53	63.291	ENSORLG00015017880	scaf4a	76	64.479	Oryzias_latipes_hsok
ENSXETG00000007351	scaf4	55	64.557	ENSOMEG00000014482	scaf4a	77	65.637	Oryzias_melastigma
ENSXETG00000007351	scaf4	61	56.094	ENSOGAG00000014653	SCAF4	99	52.936	Otolemur_garnettii
ENSXETG00000007351	scaf4	61	61.472	ENSOARG00000013894	SCAF4	98	54.568	Ovis_aries
ENSXETG00000007351	scaf4	63	66.619	ENSPPAG00000028535	SCAF4	99	55.796	Pan_paniscus
ENSXETG00000007351	scaf4	62	61.925	ENSPPRG00000000635	SCAF4	99	54.722	Panthera_pardus
ENSXETG00000007351	scaf4	62	66.377	ENSPTIG00000021578	SCAF4	99	55.556	Panthera_tigris_altaica
ENSXETG00000007351	scaf4	63	66.619	ENSPTRG00000013848	SCAF4	99	55.796	Pan_troglodytes
ENSXETG00000007351	scaf4	63	66.476	ENSPANG00000017332	SCAF4	99	55.025	Papio_anubis
ENSXETG00000007351	scaf4	66	53.121	ENSPKIG00000022408	scaf4a	99	57.179	Paramormyrops_kingsleyae
ENSXETG00000007351	scaf4	65	59.854	ENSPMGG00000016741	scaf4a	51	59.854	Periophthalmus_magnuspinnatus
ENSXETG00000007351	scaf4	63	48.438	ENSPFOG00000003261	scaf4b	62	52.239	Poecilia_formosa
ENSXETG00000007351	scaf4	61	62.903	ENSPFOG00000017156	scaf4a	72	49.560	Poecilia_formosa
ENSXETG00000007351	scaf4	61	54.054	ENSPLAG00000004403	-	66	53.716	Poecilia_latipinna
ENSXETG00000007351	scaf4	59	56.884	ENSPMEG00000006666	-	62	56.506	Poecilia_mexicana
ENSXETG00000007351	scaf4	61	54.000	ENSPREG00000013510	scaf4b	65	55.417	Poecilia_reticulata
ENSXETG00000007351	scaf4	63	66.476	ENSPPYG00000011355	SCAF4	99	55.583	Pongo_abelii
ENSXETG00000007351	scaf4	66	76.868	ENSPCAG00000009998	SCAF4	94	73.986	Procavia_capensis
ENSXETG00000007351	scaf4	63	66.476	ENSPCOG00000018710	SCAF4	99	56.442	Propithecus_coquereli
ENSXETG00000007351	scaf4	63	62.712	ENSPVAG00000005220	SCAF4	99	57.383	Pteropus_vampyrus
ENSXETG00000007351	scaf4	50	61.071	ENSPNYG00000010526	scaf4b	60	65.641	Pundamilia_nyererei
ENSXETG00000007351	scaf4	75	64.706	ENSRBIG00000040007	SCAF4	99	55.443	Rhinopithecus_bieti
ENSXETG00000007351	scaf4	63	66.762	ENSRROG00000029488	SCAF4	99	55.806	Rhinopithecus_roxellana
ENSXETG00000007351	scaf4	64	64.689	ENSSHAG00000001581	SCAF4	99	57.390	Sarcophilus_harrisii
ENSXETG00000007351	scaf4	86	43.435	ENSSFOG00015006338	scaf4a	56	51.133	Scleropages_formosus
ENSXETG00000007351	scaf4	73	52.786	ENSSMAG00000003738	scaf4b	69	56.349	Scophthalmus_maximus
ENSXETG00000007351	scaf4	83	55.068	ENSSMAG00000017901	scaf4a	58	58.377	Scophthalmus_maximus
ENSXETG00000007351	scaf4	51	58.929	ENSSDUG00000012380	scaf4b	69	58.921	Seriola_dumerili
ENSXETG00000007351	scaf4	53	48.101	ENSSDUG00000012918	scaf4a	61	55.904	Seriola_dumerili
ENSXETG00000007351	scaf4	87	49.357	ENSSLDG00000021671	scaf4a	86	54.534	Seriola_lalandi_dorsalis
ENSXETG00000007351	scaf4	62	62.302	ENSSARG00000009994	SCAF4	99	53.725	Sorex_araneus
ENSXETG00000007351	scaf4	63	61.657	ENSSSCG00000021023	SCAF4	99	55.724	Sus_scrofa
ENSXETG00000007351	scaf4	51	58.696	ENSTRUG00000009536	-	66	62.500	Takifugu_rubripes
ENSXETG00000007351	scaf4	62	65.268	ENSTTRG00000010963	SCAF4	99	56.573	Tursiops_truncatus
ENSXETG00000007351	scaf4	63	62.625	ENSUAMG00000008860	SCAF4	99	57.998	Ursus_americanus
ENSXETG00000007351	scaf4	54	81.761	ENSUMAG00000016962	SCAF4	99	57.352	Ursus_maritimus
ENSXETG00000007351	scaf4	61	65.598	ENSVVUG00000002953	SCAF4	99	55.867	Vulpes_vulpes