EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXETG00000008055 (Gene tree)
Gene ID: -
Gene Symbol: rab3b
Alias: -
Full Name: Xenopus tropicalis RAB3B%2C member RAS oncogene family (rab3b)%2C mRNA.
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Minus strand
Length: 48374 bases
Position: chrGL172637.1:5335167-5383540
Accession: NM_001100276
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000063919	MMR_HSR1	PF01926.23	3.2e-05	1	1
ENSXETP00000017656	MMR_HSR1	PF01926.23	5.2e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000064155	-	2278	-	ENSXETP00000063919	196 (aa)	-	F7CL42
ENSXETT00000017656	-	2169	XM_018092876	ENSXETP00000017656	225 (aa)	XP_017948365	F6TE38

Gene Model

Click here to download ENSXETG00000008055's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000008055's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXETG00000008055	rab3b	86	48.824	ENSXETG00000004289	rab12	65	43.842
ENSXETG00000008055	rab3b	80	40.252	ENSXETG00000032443	RAB39B	76	40.373
ENSXETG00000008055	rab3b	96	34.359	ENSXETG00000025484	rab11b.1	90	34.826
ENSXETG00000008055	rab3b	74	30.612	ENSXETG00000007760	rap2b	87	30.818
ENSXETG00000008055	rab3b	87	38.235	ENSXETG00000017184	rab2b	81	37.931
ENSXETG00000008055	rab3b	99	40.206	ENSXETG00000011370	rab35	99	39.698
ENSXETG00000008055	rab3b	80	38.365	ENSXETG00000020622	rab39a	79	38.037
ENSXETG00000008055	rab3b	75	32.653	ENSXETG00000004449	rab23	69	31.928
ENSXETG00000008055	rab3b	80	31.902	ENSXETG00000030983	RASL11A	66	31.902
ENSXETG00000008055	rab3b	100	39.216	ENSXETG00000020404	rab25	96	38.571
ENSXETG00000008055	rab3b	83	48.148	ENSXETG00000002201	rab15	79	47.305
ENSXETG00000008055	rab3b	80	33.540	ENSXETG00000005944	rab7b	79	33.540
ENSXETG00000008055	rab3b	68	50.746	ENSXETG00000020729	rab13	99	46.296
ENSXETG00000008055	rab3b	80	40.127	ENSXETG00000023200	rab6a	83	40.127
ENSXETG00000008055	rab3b	87	47.059	ENSXETG00000026943	rab35	89	45.810
ENSXETG00000008055	rab3b	81	30.061	ENSXETG00000018133	rab9b	81	30.061
ENSXETG00000008055	rab3b	99	36.275	ENSXETG00000030938	rab41	92	36.275
ENSXETG00000008055	rab3b	81	30.818	ENSXETG00000003398	kras	84	30.818
ENSXETG00000008055	rab3b	73	33.333	ENSXETG00000022517	rerg	71	33.333
ENSXETG00000008055	rab3b	82	46.914	ENSXETG00000004556	rab18	78	46.914
ENSXETG00000008055	rab3b	100	34.171	ENSXETG00000016920	rab33b	85	34.171
ENSXETG00000008055	rab3b	98	34.197	ENSXETG00000002305	rab5a	89	34.197
ENSXETG00000008055	rab3b	83	30.159	ENSXETG00000019257	rab34	68	30.159
ENSXETG00000008055	rab3b	97	35.204	ENSXETG00000006639	rab11a	90	35.644
ENSXETG00000008055	rab3b	100	33.000	ENSXETG00000016176	rab7a	97	33.000
ENSXETG00000008055	rab3b	90	35.714	ENSXETG00000021890	rab11b.2	85	36.170
ENSXETG00000008055	rab3b	99	32.000	ENSXETG00000014257	mgc75872	97	32.000
ENSXETG00000008055	rab3b	63	40.650	ENSXETG00000031363	-	59	40.650
ENSXETG00000008055	rab3b	81	30.189	ENSXETG00000014935	ralb	84	30.189
ENSXETG00000008055	rab3b	98	44.271	ENSXETG00000014011	rab1a	95	44.615
ENSXETG00000008055	rab3b	87	35.260	ENSXETG00000018183	rab33a	80	35.260
ENSXETG00000008055	rab3b	81	30.189	ENSXETG00000006040	hras	83	30.189
ENSXETG00000008055	rab3b	94	37.306	ENSXETG00000013633	rab30	98	36.816
ENSXETG00000008055	rab3b	88	30.556	ENSXETG00000013345	rab9a	90	30.556

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000008055	rab3b	99	83.673	ENSDARG00000114797	rab3b	99	82.488	Danio_rerio