EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXETG00000008158 (Gene tree)
Gene ID: -
Gene Symbol: bms1
Alias: -
Full Name: BMS1%2C ribosome biogenesis factor
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Plus strand
Length: 18436 bases
Position: chrGL173478.1:185293-203728
Accession: XB-GENE-5796193
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000017893	AARP2CN	PF08142.12	4.2e-32	1	1
ENSXETP00000017895	AARP2CN	PF08142.12	1.5e-31	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000017895	-	3642	-	ENSXETP00000017895	1214 (aa)	-	F6U4Y5
ENSXETT00000017893	-	1701	-	ENSXETP00000017893	567 (aa)	-	F6U4Z5

Gene Model

Click here to download ENSXETG00000008158's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000008158's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000008158	bms1	99	65.710	ENSG00000165733	BMS1	98	65.197	Homo_sapiens
ENSXETG00000008158	bms1	52	71.622	ENSAPOG00000016107	-	81	71.622	Acanthochromis_polyacanthus
ENSXETG00000008158	bms1	59	77.381	ENSAPOG00000020157	-	97	75.967	Acanthochromis_polyacanthus
ENSXETG00000008158	bms1	50	74.913	ENSAPOG00000002296	bms1	98	61.588	Acanthochromis_polyacanthus
ENSXETG00000008158	bms1	99	65.712	ENSAMEG00000016834	BMS1	98	65.016	Ailuropoda_melanoleuca
ENSXETG00000008158	bms1	99	61.396	ENSACIG00000002588	bms1	98	61.557	Amphilophus_citrinellus
ENSXETG00000008158	bms1	81	67.660	ENSAOCG00000018088	bms1	98	61.706	Amphiprion_ocellaris
ENSXETG00000008158	bms1	79	68.398	ENSAPEG00000014673	bms1	98	61.514	Amphiprion_percula
ENSXETG00000008158	bms1	86	72.517	ENSATEG00000023465	bms1	98	61.928	Anabas_testudineus
ENSXETG00000008158	bms1	95	66.316	ENSAPLG00000003759	BMS1	99	66.018	Anas_platyrhynchos
ENSXETG00000008158	bms1	99	66.283	ENSACAG00000004537	-	98	65.601	Anolis_carolinensis
ENSXETG00000008158	bms1	99	65.201	ENSANAG00000023432	BMS1	98	64.673	Aotus_nancymaae
ENSXETG00000008158	bms1	99	62.069	ENSACLG00000001294	bms1	98	61.935	Astatotilapia_calliptera
ENSXETG00000008158	bms1	86	69.565	ENSAMXG00000011236	bms1	98	60.987	Astyanax_mexicanus
ENSXETG00000008158	bms1	99	66.306	ENSBTAG00000012878	BMS1	98	66.248	Bos_taurus
ENSXETG00000008158	bms1	84	47.666	WBGene00022021	Y61A9LA.10	88	49.211	Caenorhabditis_elegans
ENSXETG00000008158	bms1	99	64.965	ENSCJAG00000021705	BMS1	98	64.752	Callithrix_jacchus
ENSXETG00000008158	bms1	99	65.402	ENSCAFG00000007114	BMS1	98	64.258	Canis_familiaris
ENSXETG00000008158	bms1	99	65.402	ENSCAFG00020025282	BMS1	98	64.258	Canis_lupus_dingo
ENSXETG00000008158	bms1	99	66.255	ENSCHIG00000023251	BMS1	98	66.274	Capra_hircus
ENSXETG00000008158	bms1	99	62.023	ENSCAPG00000008652	BMS1	98	61.417	Cavia_aperea
ENSXETG00000008158	bms1	99	55.928	ENSCCAG00000024969	-	98	54.834	Cebus_capucinus
ENSXETG00000008158	bms1	99	65.611	ENSCATG00000030625	-	98	65.224	Cercocebus_atys
ENSXETG00000008158	bms1	99	65.062	ENSCLAG00000002446	BMS1	98	64.409	Chinchilla_lanigera
ENSXETG00000008158	bms1	99	65.842	ENSCSAG00000011118	BMS1	98	65.146	Chlorocebus_sabaeus
ENSXETG00000008158	bms1	99	64.446	ENSCHOG00000011055	BMS1	98	63.765	Choloepus_hoffmanni
ENSXETG00000008158	bms1	99	68.955	ENSCPBG00000025581	BMS1	98	68.034	Chrysemys_picta_bellii
ENSXETG00000008158	bms1	83	57.353	ENSCING00000003181	-	94	56.373	Ciona_intestinalis
ENSXETG00000008158	bms1	82	46.356	ENSCSAVG00000004113	-	85	60.632	Ciona_savignyi
ENSXETG00000008158	bms1	99	66.149	ENSCANG00000011609	BMS1	98	65.433	Colobus_angolensis_palliatus
ENSXETG00000008158	bms1	99	65.757	ENSCGRG00001019461	Bms1	98	64.818	Cricetulus_griseus_chok1gshd
ENSXETG00000008158	bms1	99	65.757	ENSCGRG00000009016	Bms1	98	64.818	Cricetulus_griseus_crigri
ENSXETG00000008158	bms1	86	72.577	ENSCSEG00000002469	bms1	98	60.032	Cynoglossus_semilaevis
ENSXETG00000008158	bms1	87	65.800	ENSCVAG00000008371	bms1	98	62.500	Cyprinodon_variegatus
ENSXETG00000008158	bms1	99	62.996	ENSDARG00000054154	bms1	98	62.744	Danio_rerio
ENSXETG00000008158	bms1	99	65.050	ENSDNOG00000015761	BMS1	98	64.789	Dasypus_novemcinctus
ENSXETG00000008158	bms1	99	65.603	ENSDORG00000002982	Bms1	98	65.296	Dipodomys_ordii
ENSXETG00000008158	bms1	87	58.333	FBgn0036686	CG7728	86	58.374	Drosophila_melanogaster
ENSXETG00000008158	bms1	99	65.552	ENSEASG00005006894	BMS1	98	65.272	Equus_asinus_asinus
ENSXETG00000008158	bms1	99	66.019	ENSECAG00000001358	BMS1	98	65.430	Equus_caballus
ENSXETG00000008158	bms1	94	62.393	ENSELUG00000001756	bms1	99	62.072	Esox_lucius
ENSXETG00000008158	bms1	99	65.789	ENSFCAG00000011220	BMS1	98	65.279	Felis_catus
ENSXETG00000008158	bms1	99	65.046	ENSFALG00000006882	BMS1	98	64.022	Ficedula_albicollis
ENSXETG00000008158	bms1	88	70.192	ENSFHEG00000003367	bms1	98	62.156	Fundulus_heteroclitus
ENSXETG00000008158	bms1	99	59.785	ENSGMOG00000000718	bms1	98	59.435	Gadus_morhua
ENSXETG00000008158	bms1	99	66.155	ENSGALG00000002624	BMS1	98	65.423	Gallus_gallus
ENSXETG00000008158	bms1	74	71.059	ENSGAFG00000009067	bms1	87	66.253	Gambusia_affinis
ENSXETG00000008158	bms1	90	67.357	ENSGACG00000015334	bms1	86	67.333	Gasterosteus_aculeatus
ENSXETG00000008158	bms1	99	70.420	ENSGAGG00000003467	BMS1	98	69.317	Gopherus_agassizii
ENSXETG00000008158	bms1	99	62.169	ENSHBUG00000022628	bms1	98	61.874	Haplochromis_burtoni
ENSXETG00000008158	bms1	99	64.903	ENSHGLG00000000477	BMS1	98	64.303	Heterocephalus_glaber_female
ENSXETG00000008158	bms1	99	64.903	ENSHGLG00100002176	BMS1	98	64.303	Heterocephalus_glaber_male
ENSXETG00000008158	bms1	92	64.717	ENSHCOG00000017604	bms1	98	61.102	Hippocampus_comes
ENSXETG00000008158	bms1	97	75.676	ENSIPUG00000017855	bms1	98	61.278	Ictalurus_punctatus
ENSXETG00000008158	bms1	99	65.736	ENSSTOG00000015063	BMS1	98	64.937	Ictidomys_tridecemlineatus
ENSXETG00000008158	bms1	99	65.105	ENSJJAG00000017328	Bms1	98	65.217	Jaculus_jaculus
ENSXETG00000008158	bms1	96	60.174	ENSKMAG00000021982	bms1	71	60.816	Kryptolebias_marmoratus
ENSXETG00000008158	bms1	89	62.913	ENSLBEG00000028208	bms1	98	61.124	Labrus_bergylta
ENSXETG00000008158	bms1	99	59.363	ENSLACG00000001600	BMS1	99	59.544	Latimeria_chalumnae
ENSXETG00000008158	bms1	77	72.540	ENSLOCG00000012914	bms1	98	63.358	Lepisosteus_oculatus
ENSXETG00000008158	bms1	96	67.831	ENSLAFG00000006250	BMS1	87	70.492	Loxodonta_africana
ENSXETG00000008158	bms1	91	68.381	ENSMFAG00000037771	BMS1	95	70.406	Macaca_fascicularis
ENSXETG00000008158	bms1	89	55.599	ENSMLEG00000029084	-	78	60.102	Mandrillus_leucophaeus
ENSXETG00000008158	bms1	99	61.451	ENSMAMG00000020855	bms1	98	59.760	Mastacembelus_armatus
ENSXETG00000008158	bms1	99	62.069	ENSMZEG00005005663	bms1	98	61.855	Maylandia_zebra
ENSXETG00000008158	bms1	95	64.828	ENSMGAG00000001170	BMS1	98	65.306	Meleagris_gallopavo
ENSXETG00000008158	bms1	99	65.679	ENSMAUG00000002195	Bms1	98	64.739	Mesocricetus_auratus
ENSXETG00000008158	bms1	99	65.224	ENSMICG00000009977	BMS1	98	64.286	Microcebus_murinus
ENSXETG00000008158	bms1	99	64.688	ENSMOCG00000002038	Bms1	98	64.016	Microtus_ochrogaster
ENSXETG00000008158	bms1	90	62.906	ENSMMOG00000000977	bms1	98	61.003	Mola_mola
ENSXETG00000008158	bms1	99	65.493	ENSMODG00000001177	BMS1	98	65.474	Monodelphis_domestica
ENSXETG00000008158	bms1	99	62.269	ENSMALG00000009680	bms1	98	60.754	Monopterus_albus
ENSXETG00000008158	bms1	72	77.670	MGP_CAROLIEiJ_G0028785	-	76	79.365	Mus_caroli
ENSXETG00000008158	bms1	99	64.606	ENSMUSG00000030138	Bms1	98	63.887	Mus_musculus
ENSXETG00000008158	bms1	99	65.275	MGP_PahariEiJ_G0022539	Bms1	98	64.381	Mus_pahari
ENSXETG00000008158	bms1	99	64.192	MGP_SPRETEiJ_G0029816	Bms1	98	63.887	Mus_spretus
ENSXETG00000008158	bms1	99	65.914	ENSMPUG00000017276	BMS1	98	65.482	Mustela_putorius_furo
ENSXETG00000008158	bms1	99	65.349	ENSMLUG00000003260	BMS1	98	65.063	Myotis_lucifugus
ENSXETG00000008158	bms1	75	72.454	ENSNBRG00000023627	bms1	98	71.946	Neolamprologus_brichardi
ENSXETG00000008158	bms1	99	64.130	ENSNLEG00000015791	BMS1	98	63.622	Nomascus_leucogenys
ENSXETG00000008158	bms1	85	77.435	ENSOPRG00000005195	BMS1	79	76.960	Ochotona_princeps
ENSXETG00000008158	bms1	99	65.888	ENSODEG00000005554	BMS1	98	65.114	Octodon_degus
ENSXETG00000008158	bms1	99	62.600	ENSONIG00000007227	bms1	98	62.066	Oreochromis_niloticus
ENSXETG00000008158	bms1	99	65.792	ENSOANG00000000662	-	98	65.669	Ornithorhynchus_anatinus
ENSXETG00000008158	bms1	99	65.576	ENSOCUG00000005354	BMS1	98	64.246	Oryctolagus_cuniculus
ENSXETG00000008158	bms1	96	60.839	ENSORLG00000014655	bms1	98	62.661	Oryzias_latipes
ENSXETG00000008158	bms1	90	64.943	ENSORLG00020016246	bms1	98	61.483	Oryzias_latipes_hni
ENSXETG00000008158	bms1	89	65.377	ENSORLG00015014183	bms1	98	62.160	Oryzias_latipes_hsok
ENSXETG00000008158	bms1	90	65.571	ENSOMEG00000015042	bms1	98	62.470	Oryzias_melastigma
ENSXETG00000008158	bms1	99	65.227	ENSOGAG00000006511	BMS1	98	64.839	Otolemur_garnettii
ENSXETG00000008158	bms1	99	66.051	ENSOARG00000003900	BMS1	98	66.066	Ovis_aries
ENSXETG00000008158	bms1	99	62.558	ENSPPAG00000027837	BMS1	98	61.998	Pan_paniscus
ENSXETG00000008158	bms1	99	65.867	ENSPPRG00000001311	BMS1	98	65.200	Panthera_pardus
ENSXETG00000008158	bms1	99	64.446	ENSPTIG00000009652	BMS1	98	65.172	Panthera_tigris_altaica
ENSXETG00000008158	bms1	99	65.710	ENSPTRG00000002441	BMS1	98	65.197	Pan_troglodytes
ENSXETG00000008158	bms1	91	68.045	ENSPKIG00000008165	bms1	88	69.494	Paramormyrops_kingsleyae
ENSXETG00000008158	bms1	99	67.334	ENSPSIG00000006481	BMS1	98	67.109	Pelodiscus_sinensis
ENSXETG00000008158	bms1	71	71.253	ENSPMGG00000012075	bms1	99	71.253	Periophthalmus_magnuspinnatus
ENSXETG00000008158	bms1	91	70.270	ENSPEMG00000022467	Bms1	98	59.192	Peromyscus_maniculatus_bairdii
ENSXETG00000008158	bms1	88	79.096	ENSPCIG00000001339	BMS1	98	79.882	Phascolarctos_cinereus
ENSXETG00000008158	bms1	90	60.595	ENSPFOG00000015180	bms1	89	69.458	Poecilia_formosa
ENSXETG00000008158	bms1	90	60.482	ENSPLAG00000007150	bms1	86	64.752	Poecilia_latipinna
ENSXETG00000008158	bms1	84	71.814	ENSPMEG00000023176	bms1	93	62.296	Poecilia_mexicana
ENSXETG00000008158	bms1	84	71.675	ENSPREG00000002695	bms1	98	62.153	Poecilia_reticulata
ENSXETG00000008158	bms1	91	71.512	ENSPPYG00000002836	-	99	58.899	Pongo_abelii
ENSXETG00000008158	bms1	91	69.923	ENSPCAG00000014528	BMS1	67	80.272	Procavia_capensis
ENSXETG00000008158	bms1	81	68.670	ENSPCOG00000023834	-	98	61.928	Propithecus_coquereli
ENSXETG00000008158	bms1	99	65.000	ENSPVAG00000000725	BMS1	98	64.365	Pteropus_vampyrus
ENSXETG00000008158	bms1	99	61.859	ENSPNYG00000018866	bms1	98	61.470	Pundamilia_nyererei
ENSXETG00000008158	bms1	76	68.203	ENSPNAG00000000676	bms1	98	60.859	Pygocentrus_nattereri
ENSXETG00000008158	bms1	91	70.270	ENSRNOG00000006576	Bms1	100	62.357	Rattus_norvegicus
ENSXETG00000008158	bms1	99	64.236	ENSRROG00000040101	BMS1	99	62.918	Rhinopithecus_roxellana
ENSXETG00000008158	bms1	72	47.653	YPL217C	-	74	47.880	Saccharomyces_cerevisiae
ENSXETG00000008158	bms1	99	65.174	ENSSBOG00000035778	BMS1	98	65.224	Saimiri_boliviensis_boliviensis
ENSXETG00000008158	bms1	98	76.835	ENSSHAG00000005062	BMS1	98	64.087	Sarcophilus_harrisii
ENSXETG00000008158	bms1	99	69.794	ENSSFOG00015022313	bms1	93	68.849	Scleropages_formosus
ENSXETG00000008158	bms1	90	63.128	ENSSDUG00000016875	bms1	98	61.434	Seriola_dumerili
ENSXETG00000008158	bms1	90	63.419	ENSSLDG00000015199	bms1	98	61.429	Seriola_lalandi_dorsalis
ENSXETG00000008158	bms1	68	55.420	ENSSARG00000014407	BMS1	100	55.543	Sorex_araneus
ENSXETG00000008158	bms1	99	67.203	ENSSPUG00000014454	BMS1	98	65.632	Sphenodon_punctatus
ENSXETG00000008158	bms1	99	66.512	ENSSSCG00000010198	BMS1	98	66.011	Sus_scrofa
ENSXETG00000008158	bms1	99	65.517	ENSTGUG00000006302	-	98	64.407	Taeniopygia_guttata
ENSXETG00000008158	bms1	99	59.622	ENSTRUG00000008028	bms1	93	64.538	Takifugu_rubripes
ENSXETG00000008158	bms1	94	65.865	ENSTNIG00000006216	bms1	86	65.882	Tetraodon_nigroviridis
ENSXETG00000008158	bms1	64	72.757	ENSTBEG00000001673	-	61	73.244	Tupaia_belangeri
ENSXETG00000008158	bms1	99	64.120	ENSTTRG00000007983	BMS1	98	64.044	Tursiops_truncatus
ENSXETG00000008158	bms1	99	66.019	ENSUAMG00000023996	BMS1	98	65.091	Ursus_americanus
ENSXETG00000008158	bms1	99	65.785	ENSUMAG00000016523	BMS1	98	64.933	Ursus_maritimus
ENSXETG00000008158	bms1	83	75.992	ENSVPAG00000007477	BMS1	93	77.263	Vicugna_pacos
ENSXETG00000008158	bms1	99	65.725	ENSVVUG00000021305	BMS1	98	64.650	Vulpes_vulpes
ENSXETG00000008158	bms1	89	69.293	ENSXCOG00000000506	bms1	94	74.564	Xiphophorus_couchianus
ENSXETG00000008158	bms1	89	69.936	ENSXMAG00000014236	bms1	98	62.705	Xiphophorus_maculatus