EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSXETG00000008263 (Gene tree)
Gene ID
-
Gene Symbol
cpsf3
Alias
-
Full Name
Xenopus tropicalis cleavage and polyadenylation specific factor 3 (cpsf3)%2C mRNA.
Gene Type
protein_coding
Species
Xenopus_tropicalis
Status
putative
Strand
Minus strand
Length
15618 bases
Position
chrGL172761.1:51103-66720
Accession
NM_001006769
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSXETP00000018123CPSF73-100_CPF11718.85.9e-5411
ENSXETP00000018123Beta-CaspPF10996.83.8e-3411
ENSXETP00000018123Lactamase_BPF00753.279.6e-1911
ENSXETP00000018123RMMBLPF07521.122.5e-2111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSXETT00000018123-2393XM_012962886ENSXETP00000018123692 (aa)XP_012818340F7E4T0
Gene Model
Click here to download ENSXETG00000008263's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000008263's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSXETG00000008263cpsf37038.370ENSXETG00000030716INTS118238.370
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSXETG00000008263cpsf39890.162ENSG00000119203CPSF3100100.000Homo_sapiens
ENSXETG00000008263cpsf37593.858ENSAPOG00000012241CPSF39393.858Acanthochromis_polyacanthus
ENSXETG00000008263cpsf39985.217ENSAPOG00000022087cpsf39985.217Acanthochromis_polyacanthus
ENSXETG00000008263cpsf39890.015ENSAMEG00000008493CPSF39990.015Ailuropoda_melanoleuca
ENSXETG00000008263cpsf39184.261ENSACIG00000023663CPSF39984.261Amphilophus_citrinellus
ENSXETG00000008263cpsf39181.558ENSACIG00000009846cpsf39981.558Amphilophus_citrinellus
ENSXETG00000008263cpsf39984.783ENSAOCG00000022056cpsf39690.167Amphiprion_ocellaris
ENSXETG00000008263cpsf39986.067ENSAOCG00000010077CPSF39986.067Amphiprion_ocellaris
ENSXETG00000008263cpsf39986.067ENSAPEG00000021167CPSF39986.067Amphiprion_percula
ENSXETG00000008263cpsf39984.928ENSAPEG00000019526cpsf39986.322Amphiprion_percula
ENSXETG00000008263cpsf39982.003ENSATEG00000014525CPSF39982.003Anabas_testudineus
ENSXETG00000008263cpsf39984.203ENSATEG00000003959cpsf39984.203Anabas_testudineus
ENSXETG00000008263cpsf39790.000ENSAPLG00000006941CPSF39890.000Anas_platyrhynchos
ENSXETG00000008263cpsf39188.801ENSACAG00000001759CPSF39988.801Anolis_carolinensis
ENSXETG00000008263cpsf39884.728ENSANAG00000031254CPSF39985.135Aotus_nancymaae
ENSXETG00000008263cpsf39184.738ENSACLG00000018846CPSF39984.738Astatotilapia_calliptera
ENSXETG00000008263cpsf39685.135ENSACLG00000014484cpsf39985.135Astatotilapia_calliptera
ENSXETG00000008263cpsf39986.067ENSAMXG00000004786cpsf39986.067Astyanax_mexicanus
ENSXETG00000008263cpsf39890.015ENSBTAG00000019735CPSF39990.015Bos_taurus
ENSXETG00000008263cpsf39060.000WBGene00013460cpsf-38960.000Caenorhabditis_elegans
ENSXETG00000008263cpsf39890.015ENSCJAG00000006276CPSF39990.015Callithrix_jacchus
ENSXETG00000008263cpsf39890.015ENSCAFG00000003375CPSF39590.015Canis_familiaris
ENSXETG00000008263cpsf38992.557ENSCAFG00020026799CPSF39992.557Canis_lupus_dingo
ENSXETG00000008263cpsf39890.015ENSCHIG00000013973CPSF39990.015Capra_hircus
ENSXETG00000008263cpsf39890.162ENSTSYG00000002967CPSF39990.162Carlito_syrichta
ENSXETG00000008263cpsf39689.624ENSCAPG00000013851CPSF39989.624Cavia_aperea
ENSXETG00000008263cpsf39889.721ENSCPOG00000011299CPSF39989.721Cavia_porcellus
ENSXETG00000008263cpsf39890.015ENSCCAG00000036730CPSF39990.015Cebus_capucinus
ENSXETG00000008263cpsf39888.123ENSCATG00000014770CPSF39994.991Cercocebus_atys
ENSXETG00000008263cpsf39889.721ENSCLAG00000002727CPSF39989.721Chinchilla_lanigera
ENSXETG00000008263cpsf39882.232ENSCSAG00000007125CPSF39982.232Chlorocebus_sabaeus
ENSXETG00000008263cpsf385100.000ENSCHOG00000000180CPSF38565.141Choloepus_hoffmanni
ENSXETG00000008263cpsf39989.840ENSCPBG00000014074CPSF39989.840Chrysemys_picta_bellii
ENSXETG00000008263cpsf39868.182ENSCING00000007214-9768.182Ciona_intestinalis
ENSXETG00000008263cpsf39979.649ENSCANG00000034435CPSF39979.649Colobus_angolensis_palliatus
ENSXETG00000008263cpsf39889.574ENSCGRG00001013134Cpsf39989.574Cricetulus_griseus_chok1gshd
ENSXETG00000008263cpsf39889.574ENSCGRG00000018319Cpsf39989.574Cricetulus_griseus_crigri
ENSXETG00000008263cpsf39984.493ENSCSEG00000002021CPSF39984.675Cynoglossus_semilaevis
ENSXETG00000008263cpsf39985.776ENSCVAG00000015067CPSF39985.776Cyprinodon_variegatus
ENSXETG00000008263cpsf39985.631ENSDARG00000027649cpsf39985.631Danio_rerio
ENSXETG00000008263cpsf39888.563ENSDNOG00000008940CPSF39588.563Dasypus_novemcinctus
ENSXETG00000008263cpsf39490.923ENSDORG00000014263Cpsf39990.923Dipodomys_ordii
ENSXETG00000008263cpsf39966.035FBgn0261065Cpsf739966.035Drosophila_melanogaster
ENSXETG00000008263cpsf39478.154ENSETEG00000003893CPSF39978.154Echinops_telfairi
ENSXETG00000008263cpsf39976.130ENSEBUG00000009018cpsf39976.130Eptatretus_burgeri
ENSXETG00000008263cpsf39890.015ENSEASG00005003970CPSF39990.015Equus_asinus_asinus
ENSXETG00000008263cpsf39890.015ENSECAG00000019911CPSF39794.454Equus_caballus
ENSXETG00000008263cpsf39875.330ENSEEUG00000015422CPSF39975.330Erinaceus_europaeus
ENSXETG00000008263cpsf39986.686ENSELUG00000013775cpsf310086.686Esox_lucius
ENSXETG00000008263cpsf39890.015ENSFCAG00000007852CPSF39990.015Felis_catus
ENSXETG00000008263cpsf39390.078ENSFALG00000006572CPSF39990.078Ficedula_albicollis
ENSXETG00000008263cpsf39989.165ENSFDAG00000006317CPSF39989.165Fukomys_damarensis
ENSXETG00000008263cpsf39983.647ENSFHEG00000014774cpsf39983.647Fundulus_heteroclitus
ENSXETG00000008263cpsf35865.037ENSFHEG00000012186CPSF39965.037Fundulus_heteroclitus
ENSXETG00000008263cpsf39984.928ENSGMOG00000003157cpsf39984.928Gadus_morhua
ENSXETG00000008263cpsf39990.379ENSGALG00000016424CPSF39990.379Gallus_gallus
ENSXETG00000008263cpsf39080.892ENSGAFG00000019449cpsf39974.891Gambusia_affinis
ENSXETG00000008263cpsf39986.377ENSGAFG00000008016CPSF39986.377Gambusia_affinis
ENSXETG00000008263cpsf36885.288ENSGAGG00000025583CPSF39385.288Gopherus_agassizii
ENSXETG00000008263cpsf39887.931ENSGGOG00000001757CPSF39198.715Gorilla_gorilla
ENSXETG00000008263cpsf35876.980ENSHBUG00000014332CPSF39976.980Haplochromis_burtoni
ENSXETG00000008263cpsf39984.638ENSHBUG00000001188cpsf39984.638Haplochromis_burtoni
ENSXETG00000008263cpsf39890.162ENSHGLG00000000666CPSF39990.162Heterocephalus_glaber_female
ENSXETG00000008263cpsf39890.162ENSHGLG00100007765CPSF39990.162Heterocephalus_glaber_male
ENSXETG00000008263cpsf39984.949ENSHCOG00000015957CPSF39984.949Hippocampus_comes
ENSXETG00000008263cpsf39983.792ENSHCOG00000007251cpsf310083.792Hippocampus_comes
ENSXETG00000008263cpsf39984.470ENSIPUG00000023488cpsf39984.470Ictalurus_punctatus
ENSXETG00000008263cpsf39889.868ENSSTOG00000004476CPSF39989.868Ictidomys_tridecemlineatus
ENSXETG00000008263cpsf39889.134ENSJJAG00000023415Cpsf39989.134Jaculus_jaculus
ENSXETG00000008263cpsf39985.922ENSKMAG00000007317CPSF39985.922Kryptolebias_marmoratus
ENSXETG00000008263cpsf39983.623ENSKMAG00000002806cpsf39983.623Kryptolebias_marmoratus
ENSXETG00000008263cpsf35478.284ENSLBEG00000015018-9978.284Labrus_bergylta
ENSXETG00000008263cpsf39586.778ENSLBEG00000013492CPSF39986.778Labrus_bergylta
ENSXETG00000008263cpsf39978.406ENSLBEG00000020569cpsf39678.406Labrus_bergylta
ENSXETG00000008263cpsf39983.188ENSLACG00000008308CPSF39983.188Latimeria_chalumnae
ENSXETG00000008263cpsf39986.850ENSLOCG00000016823cpsf39986.850Lepisosteus_oculatus
ENSXETG00000008263cpsf39888.348ENSLAFG00000009467CPSF39988.348Loxodonta_africana
ENSXETG00000008263cpsf39890.015ENSMFAG00000001339CPSF39595.643Macaca_fascicularis
ENSXETG00000008263cpsf39389.457ENSMMUG00000018038CPSF39989.457Macaca_mulatta
ENSXETG00000008263cpsf39099.206ENSMNEG00000039447CPSF39999.206Macaca_nemestrina
ENSXETG00000008263cpsf39890.162ENSMLEG00000026825CPSF39298.712Mandrillus_leucophaeus
ENSXETG00000008263cpsf39183.360ENSMAMG00000008835CPSF39983.360Mastacembelus_armatus
ENSXETG00000008263cpsf39984.203ENSMAMG00000003076cpsf39984.203Mastacembelus_armatus
ENSXETG00000008263cpsf39984.638ENSMZEG00005014358cpsf39984.638Maylandia_zebra
ENSXETG00000008263cpsf39986.357ENSMZEG00005006258CPSF39986.357Maylandia_zebra
ENSXETG00000008263cpsf39690.376ENSMGAG00000013995CPSF39990.376Meleagris_gallopavo
ENSXETG00000008263cpsf35480.481ENSMAUG00000000166Cpsf39980.481Mesocricetus_auratus
ENSXETG00000008263cpsf39885.169ENSMICG00000002363CPSF39985.169Microcebus_murinus
ENSXETG00000008263cpsf39886.637ENSMOCG00000020067Cpsf39986.637Microtus_ochrogaster
ENSXETG00000008263cpsf39950.360ENSMMOG00000011923CPSF39951.572Mola_mola
ENSXETG00000008263cpsf39380.650ENSMMOG00000018212CPSF39880.650Mola_mola
ENSXETG00000008263cpsf39888.081ENSMODG00000014703CPSF39988.081Monodelphis_domestica
ENSXETG00000008263cpsf39984.493ENSMALG00000016416cpsf39984.493Monopterus_albus
ENSXETG00000008263cpsf39181.534ENSMALG00000011474CPSF39981.534Monopterus_albus
ENSXETG00000008263cpsf39889.574MGP_CAROLIEiJ_G0017640Cpsf39989.574Mus_caroli
ENSXETG00000008263cpsf39889.574ENSMUSG00000054309Cpsf39699.153Mus_musculus
ENSXETG00000008263cpsf39889.427MGP_PahariEiJ_G0029397Cpsf39989.427Mus_pahari
ENSXETG00000008263cpsf39889.574MGP_SPRETEiJ_G0018481Cpsf39989.574Mus_spretus
ENSXETG00000008263cpsf39989.883ENSMPUG00000013213CPSF39989.883Mustela_putorius_furo
ENSXETG00000008263cpsf39889.883ENSMLUG00000010636CPSF39989.883Myotis_lucifugus
ENSXETG00000008263cpsf39889.574ENSNGAG00000019836Cpsf39989.574Nannospalax_galili
ENSXETG00000008263cpsf39184.738ENSNBRG00000010525CPSF39984.738Neolamprologus_brichardi
ENSXETG00000008263cpsf39984.783ENSNBRG00000004770cpsf39984.783Neolamprologus_brichardi
ENSXETG00000008263cpsf39890.015ENSNLEG00000013359CPSF39198.715Nomascus_leucogenys
ENSXETG00000008263cpsf39958.798ENSMEUG00000013117-9958.798Notamacropus_eugenii
ENSXETG00000008263cpsf39980.938ENSOPRG00000008902CPSF39980.938Ochotona_princeps
ENSXETG00000008263cpsf39889.868ENSODEG00000003129CPSF39989.868Octodon_degus
ENSXETG00000008263cpsf39984.928ENSONIG00000018812cpsf39984.928Oreochromis_niloticus
ENSXETG00000008263cpsf38188.256ENSOANG00000008577CPSF39988.256Ornithorhynchus_anatinus
ENSXETG00000008263cpsf39889.868ENSOCUG00000003728CPSF39989.868Oryctolagus_cuniculus
ENSXETG00000008263cpsf39982.319ENSORLG00000018854cpsf39982.319Oryzias_latipes
ENSXETG00000008263cpsf39982.319ENSORLG00020013331cpsf39982.319Oryzias_latipes_hni
ENSXETG00000008263cpsf39982.319ENSORLG00015011017cpsf39982.319Oryzias_latipes_hsok
ENSXETG00000008263cpsf39982.609ENSOMEG00000010647cpsf39682.609Oryzias_melastigma
ENSXETG00000008263cpsf39880.323ENSOGAG00000001680CPSF39980.323Otolemur_garnettii
ENSXETG00000008263cpsf39890.015ENSOARG00000015073CPSF39990.015Ovis_aries
ENSXETG00000008263cpsf39890.162ENSPPAG00000042457CPSF39198.715Pan_paniscus
ENSXETG00000008263cpsf39890.015ENSPPRG00000016790CPSF39990.015Panthera_pardus
ENSXETG00000008263cpsf39889.971ENSPTIG00000003920CPSF39989.971Panthera_tigris_altaica
ENSXETG00000008263cpsf39890.162ENSPTRG00000011638CPSF39198.715Pan_troglodytes
ENSXETG00000008263cpsf39890.162ENSPANG00000016798CPSF39595.643Papio_anubis
ENSXETG00000008263cpsf39986.957ENSPKIG00000023646cpsf39986.997Paramormyrops_kingsleyae
ENSXETG00000008263cpsf39888.840ENSPSIG00000016144CPSF39988.840Pelodiscus_sinensis
ENSXETG00000008263cpsf37986.182ENSPMGG00000006141-9586.182Periophthalmus_magnuspinnatus
ENSXETG00000008263cpsf35976.296ENSPMGG00000015311CPSF39976.296Periophthalmus_magnuspinnatus
ENSXETG00000008263cpsf39889.868ENSPEMG00000017668Cpsf39989.868Peromyscus_maniculatus_bairdii
ENSXETG00000008263cpsf37890.203ENSPMAG00000004841cpsf39990.203Petromyzon_marinus
ENSXETG00000008263cpsf39689.339ENSPCIG00000009823CPSF39890.031Phascolarctos_cinereus
ENSXETG00000008263cpsf39986.087ENSPFOG00000010418-9986.087Poecilia_formosa
ENSXETG00000008263cpsf39982.874ENSPFOG00000015922cpsf39982.874Poecilia_formosa
ENSXETG00000008263cpsf39982.874ENSPLAG00000000882cpsf39982.874Poecilia_latipinna
ENSXETG00000008263cpsf35978.519ENSPLAG00000021300-9978.519Poecilia_latipinna
ENSXETG00000008263cpsf39983.019ENSPMEG00000018309cpsf39983.019Poecilia_mexicana
ENSXETG00000008263cpsf39081.210ENSPREG00000014875cpsf39975.181Poecilia_reticulata
ENSXETG00000008263cpsf39981.449ENSPREG00000004482CPSF39981.449Poecilia_reticulata
ENSXETG00000008263cpsf39885.756ENSPPYG00000012666CPSF39985.756Pongo_abelii
ENSXETG00000008263cpsf39459.692ENSPCAG00000015042CPSF39959.692Procavia_capensis
ENSXETG00000008263cpsf38987.500ENSPCOG00000023016CPSF39987.500Propithecus_coquereli
ENSXETG00000008263cpsf39990.029ENSPVAG00000005324CPSF39990.029Pteropus_vampyrus
ENSXETG00000008263cpsf37889.503ENSPNYG00000021047CPSF39189.503Pundamilia_nyererei
ENSXETG00000008263cpsf39984.638ENSPNYG00000004405cpsf39984.638Pundamilia_nyererei
ENSXETG00000008263cpsf39985.631ENSPNAG00000023060cpsf39985.631Pygocentrus_nattereri
ENSXETG00000008263cpsf39889.574ENSRNOG00000052418Cpsf39989.574Rattus_norvegicus
ENSXETG00000008263cpsf39885.022ENSRBIG00000041615CPSF39985.891Rhinopithecus_bieti
ENSXETG00000008263cpsf39890.162ENSRROG00000033792CPSF39990.162Rhinopithecus_roxellana
ENSXETG00000008263cpsf38841.571YLR277CYSH19041.571Saccharomyces_cerevisiae
ENSXETG00000008263cpsf39686.015ENSSBOG00000027263CPSF39786.015Saimiri_boliviensis_boliviensis
ENSXETG00000008263cpsf39889.574ENSSHAG00000007024CPSF39989.574Sarcophilus_harrisii
ENSXETG00000008263cpsf39987.246ENSSFOG00015002108cpsf39987.246Scleropages_formosus
ENSXETG00000008263cpsf39584.954ENSSMAG00000020534CPSF39784.954Scophthalmus_maximus
ENSXETG00000008263cpsf39984.783ENSSDUG00000002828cpsf39784.783Seriola_dumerili
ENSXETG00000008263cpsf39985.922ENSSDUG00000018498CPSF39985.922Seriola_dumerili
ENSXETG00000008263cpsf39985.922ENSSLDG00000005234CPSF39985.922Seriola_lalandi_dorsalis
ENSXETG00000008263cpsf39984.928ENSSLDG00000008469cpsf39984.961Seriola_lalandi_dorsalis
ENSXETG00000008263cpsf39874.743ENSSARG00000005186CPSF39974.743Sorex_araneus
ENSXETG00000008263cpsf39687.593ENSSPUG00000015525CPSF39787.593Sphenodon_punctatus
ENSXETG00000008263cpsf39984.928ENSSPAG00000018579cpsf39984.928Stegastes_partitus
ENSXETG00000008263cpsf39985.922ENSSPAG00000002906CPSF39985.922Stegastes_partitus
ENSXETG00000008263cpsf39890.162ENSSSCG00000020799CPSF39990.162Sus_scrofa
ENSXETG00000008263cpsf39990.176ENSTGUG00000013016CPSF39990.176Taeniopygia_guttata
ENSXETG00000008263cpsf39983.671ENSTRUG00000007030cpsf39883.671Takifugu_rubripes
ENSXETG00000008263cpsf35970.516ENSTRUG00000013905CPSF39970.516Takifugu_rubripes
ENSXETG00000008263cpsf38493.132ENSTBEG00000002707CPSF38493.132Tupaia_belangeri
ENSXETG00000008263cpsf38675.545ENSTTRG00000000861CPSF38775.545Tursiops_truncatus
ENSXETG00000008263cpsf39590.854ENSUAMG00000007535CPSF39490.854Ursus_americanus
ENSXETG00000008263cpsf39389.457ENSUMAG00000003676CPSF39989.457Ursus_maritimus
ENSXETG00000008263cpsf39288.959ENSVPAG00000008041CPSF310088.959Vicugna_pacos
ENSXETG00000008263cpsf39890.015ENSVVUG00000002194CPSF39990.015Vulpes_vulpes
ENSXETG00000008263cpsf35476.882ENSXCOG00000000957-8776.882Xiphophorus_couchianus
ENSXETG00000008263cpsf39983.019ENSXCOG00000019695cpsf39983.019Xiphophorus_couchianus
ENSXETG00000008263cpsf39983.164ENSXMAG00000009784cpsf39983.164Xiphophorus_maculatus
ENSXETG00000008263cpsf39986.232ENSXMAG00000027291CPSF39986.232Xiphophorus_maculatus

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